Bernard Offmann - Publications

Affiliations: 
2002-2011 LBGM Universite de La Reunion, France 
 2011- UFIP UMR CNRS 6286 Université de Nantes 
Area:
Protein structures, Pentapeptides, Mosquito, Hydrogen production, Fkbp12, Molecular recognition, High-Affinity ligand, Proteins, Protein engineering, Machine learning
Website:
http://www.bernardoffmann.fr

48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Gheyouche E, Bagueneau M, Loirand G, Offmann B, Téletchéa S. Structural Design and Analysis of the RHOA-ARHGEF1 Binding Mode: Challenges and Applications for Protein-Protein Interface Prediction. Frontiers in Molecular Biosciences. 8: 643728. PMID 34109211 DOI: 10.3389/fmolb.2021.643728  0.52
2021 Cadet F, Fontaine N, Li G, Sanchis J, Chong MNF, Pandjaitan R, Vetrivel I, Offmann B, Reetz MT. Publisher Correction: A machine learning approach for reliable prediction of amino acid interactions and its application in the directed evolution of enantioselective enzymes. Scientific Reports. 11: 8357. PMID 33846404 DOI: 10.1038/s41598-021-86884-x  1
2020 Dhingra S, Sowdhamini R, Cadet F, Offmann B. A glance into the evolution of template-free protein structure prediction methodologies. Biochimie. PMID 32417458 DOI: 10.1016/J.Biochi.2020.04.026  1
2020 Liu G, Xuan N, Rajashekar B, Arnaud P, Offmann B, Picimbon JF. Comprehensive History of Genes: Evolution, Phylogenetic Distribution and Functions. Genes. 11. PMID 32290210 DOI: 10.3390/Genes11040413  1
2020 Nagaraja AA, Charton P, Cadet XF, Fontaine N, Delsaut M, Wiltschi B, Voit A, Offmann B, Damour C, Grondin-Perez B, Cadet F. A Machine Learning Approach for Efficient Selection of Enzyme Concentrations and Its Application for Flux Optimization Catalysts. 10: 291. DOI: 10.3390/Catal10030291  1
2019 Vetrivel I, de Brevern AG, Cadet F, Srinivasan N, Offmann B. Structural variations within proteins can be as large as variations observed across their homologues. Biochimie. PMID 31560932 DOI: 10.1016/J.Biochi.2019.09.013  1
2019 Ostafe R, Fontaine N, Frank D, Chong MNF, Prodanovic R, Pandjaitan R, Offman B, Cadet F, Fischer R. One-shot Optimization of Multiple Enzyme Parameters: Tailoring Glucose Oxidase for pH and Electron Mediators. Biotechnology and Bioengineering. PMID 31520472 DOI: 10.1002/Bit.27169  0.56
2019 Ghosh P, Joshi A, Guita N, Offmann B, Sowdhamini R. EcRBPome: a comprehensive database of all known E. coli RNA-binding proteins. Bmc Genomics. 20: 403. PMID 31117939 DOI: 10.1186/S12864-019-5755-5  1
2019 Ajjolli Nagaraja A, Fontaine N, Delsaut M, Charton P, Damour C, Offmann B, Grondin-Perez B, Cadet F. Flux prediction using artificial neural network (ANN) for the upper part of glycolysis. Plos One. 14: e0216178. PMID 31067238 DOI: 10.1371/Journal.Pone.0216178  1
2018 Cadet F, Fontaine N, Li G, Sanchis J, Ng Fuk Chong M, Pandjaitan R, Vetrivel I, Offmann B, Reetz MT. A machine learning approach for reliable prediction of amino acid interactions and its application in the directed evolution of enantioselective enzymes. Scientific Reports. 8: 16757. PMID 30425279 DOI: 10.1038/S41598-018-35033-Y  1
2017 Vetrivel I, Mahajan S, Tyagi M, Hoffmann L, Sanejouand YH, Srinivasan N, de Brevern AG, Cadet F, Offmann B. Knowledge-based prediction of protein backbone conformation using a structural alphabet. Plos One. 12: e0186215. PMID 29161266 DOI: 10.1371/Journal.Pone.0186215  1
2017 Liu G, Arnaud P, Offmann B, Picimbon JF. Genotyping and Bio-Sensing Chemosensory Proteins in Insects. Sensors (Basel, Switzerland). 17. PMID 28777348 DOI: 10.3390/s17081801  1
2016 Liu G, Ma H, Xie H, Xuan N, Guo X, Fan Z, Rajashekar B, Arnaud P, Offmann B, Picimbon JF. Biotype Characterization, Developmental Profiling, Insecticide Response and Binding Property of Bemisia tabaci Chemosensory Proteins: Role of CSP in Insect Defense. Plos One. 11: e0154706. PMID 27167733 DOI: 10.1371/Journal.Pone.0154706  1
2016 Verhaeghe T, De Winter K, Berland M, De Vreese R, D'hooghe M, Offmann B, Desmet T. Converting bulk sugars into prebiotics: semi-rational design of a transglucosylase with controlled selectivity. Chemical Communications (Cambridge, England). 52: 3687-9. PMID 26858011 DOI: 10.1039/C5Cc09940D  1
2015 Mahajan S, de Brevern AG, Sanejouand YH, Srinivasan N, Offmann B. Use of a structural alphabet to find compatible folds for amino acid sequences. Protein Science : a Publication of the Protein Society. 24: 145-53. PMID 25297700 DOI: 10.1002/Pro.2581  1
2015 Fontaine N, Grondin-Perez B, Cadet F, Offmann B. Modeling of a Cell-Free Synthetic System for Biohydrogen Production Journal of Computer Science & Systems Biology. 8: 132-139. DOI: 10.4172/Jcsb.1000181  1
2014 Berland M, Offmann B, André I, Remaud-Siméon M, Charton P. A web-based tool for rational screening of mutants libraries using ProSAR. Protein Engineering, Design & Selection : Peds. 27: 375-81. PMID 25169579 DOI: 10.1093/Protein/Gzu035  1
2014 Manoharan M, Fuchs PF, Sowdhamini R, Offmann B. Insights on pH-dependent conformational changes of mosquito odorant binding proteins by molecular dynamics simulations. Journal of Biomolecular Structure & Dynamics. 32: 1742-51. PMID 24028686 DOI: 10.1080/07391102.2013.834118  1
2014 Mahajan S, de Brevern AG, Offmann B, Srinivasan N. Correlation between local structural dynamics of proteins inferred from NMR ensembles and evolutionary dynamics of homologues of known structure. Journal of Biomolecular Structure & Dynamics. 32: 751-8. PMID 23730714 DOI: 10.1080/07391102.2013.789989  1
2013 Manoharan M, Sankar K, Offmann B, Ramanathan S. Association of putative members to family of mosquito odorant binding proteins: scoring scheme using fuzzy functional templates and cys residue positions. Bioinformatics and Biology Insights. 7: 231-51. PMID 23908587 DOI: 10.4137/Bbi.S11096  1
2013 Mahajan S, Agarwal G, Iftekhar M, Offmann B, de Brevern AG, Srinivasan N. DoSA: Database of Structural Alignments. Database : the Journal of Biological Databases and Curation. 2013: bat048. PMID 23846594 DOI: 10.1093/Database/Bat048  1
2013 Manoharan M, Ng Fuk Chong M, Vaïtinadapoulé A, Frumence E, Sowdhamini R, Offmann B. Comparative genomics of odorant binding proteins in Anopheles gambiae, Aedes aegypti, and Culex quinquefasciatus. Genome Biology and Evolution. 5: 163-80. PMID 23292137 DOI: 10.1093/Gbe/Evs131  1
2011 Chilamakuri CS, Joshi A, Rani SS, Offmann B, Sowdhamini R. Cross-Genome Comparisons of Newly Identified Domains in Mycoplasma gallisepticum and Domain Architectures with Other Mycoplasma species. Comparative and Functional Genomics. 2011: 878973. PMID 21860605 DOI: 10.1155/2011/878973  1
2010 Joseph AP, Agarwal G, Mahajan S, Gelly JC, Swapna LS, Offmann B, Cadet F, Bornot A, Tyagi M, Valadié H, Schneider B, Etchebest C, Srinivasan N, De Brevern AG. A short survey on protein blocks. Biophysical Reviews. 2: 137-147. PMID 21731588 DOI: 10.1007/S12551-010-0036-1  1
2010 Reddy CC, Rani SS, Offmann B, Sowdhamini R. Systematic search for putative new domain families in Mycoplasma gallisepticum genome. Bmc Research Notes. 3: 98. PMID 20384986 DOI: 10.1186/1756-0500-3-98  1
2009 Tyagi M, Bornot A, Offmann B, de Brevern AG. Protein short loop prediction in terms of a structural alphabet. Computational Biology and Chemistry. 33: 329-33. PMID 19625218 DOI: 10.1016/J.Compbiolchem.2009.06.002  1
2009 Tyagi M, Bornot A, Offmann B, de Brevern AG. Analysis of loop boundaries using different local structure assignment methods. Protein Science : a Publication of the Protein Society. 18: 1869-81. PMID 19606500 DOI: 10.1002/Pro.198  1
2009 Sandhya S, Rani SS, Pankaj B, Govind MK, Offmann B, Srinivasan N, Sowdhamini R. Length variations amongst protein domain superfamilies and consequences on structure and function. Plos One. 4: e4981. PMID 19333395 DOI: 10.1371/Journal.Pone.0004981  1
2009 Reddy CCS, Sowdhamini R, Offmann B. Homology Modeling and Molecular Dynamics Simulation Studies of the human resistin protein Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.3446  1
2008 Thangudu RR, Manoharan M, Srinivasan N, Cadet F, Sowdhamini R, Offmann B. Analysis on conservation of disulphide bonds and their structural features in homologous protein domain families. Bmc Structural Biology. 8: 55. PMID 19111067 DOI: 10.1186/1472-6807-8-55  1
2008 Reddy CC, Shameer K, Offmann BO, Sowdhamini R. PURE: a webserver for the prediction of domains in unassigned regions in proteins. Bmc Bioinformatics. 9: 281. PMID 18554415 DOI: 10.1186/1471-2105-9-281  1
2008 Sandhya S, Pankaj B, Govind MK, Offmann B, Srinivasan N, Sowdhamini R. CUSP: an algorithm to distinguish structurally conserved and unconserved regions in protein domain alignments and its application in the study of large length variations. Bmc Structural Biology. 8: 28. PMID 18513436 DOI: 10.1186/1472-6807-8-28  1
2008 Tyagi M, de Brevern AG, Srinivasan N, Offmann B. Protein structure mining using a structural alphabet. Proteins. 71: 920-37. PMID 18004784 DOI: 10.1002/Prot.21776  1
2007 Thangudu RR, Sharma P, Srinivasan N, Offmann B. Analycys: a database for conservation and conformation of disulphide bonds in homologous protein domains. Proteins. 67: 255-61. PMID 17285632 DOI: 10.1002/Prot.21318  1
2007 Offmann B, Tyagi M, Brevern AGd. Local Protein Structures Current Bioinformatics. 2: 165-202. DOI: 10.2174/157489307781662105  1
2006 Tyagi M, Gowri VS, Srinivasan N, de Brevern AG, Offmann B. A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications. Proteins. 65: 32-9. PMID 16894618 DOI: 10.1002/Prot.21087  1
2006 Tyagi M, Sharma P, Swamy CS, Cadet F, Srinivasan N, de Brevern AG, Offmann B. Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet. Nucleic Acids Research. 34: W119-23. PMID 16844973 DOI: 10.1093/Nar/Gkl199  1
2006 Gardebien F, Thangudu RR, Gontero B, Offmann B. Construction of a 3D model of CP12, a protein linker. Journal of Molecular Graphics & Modelling. 25: 186-95. PMID 16427344 DOI: 10.1016/J.Jmgm.2005.12.003  1
2005 Thangudu RR, Vinayagam A, Pugalenthi G, Manonmani A, Offmann B, Sowdhamini R. Native and modeled disulfide bonds in proteins: knowledge-based approaches toward structure prediction of disulfide-rich polypeptides Proteins. 58: 866-879. PMID 15645448 DOI: 10.1002/Prot.20369  1
2002 Besnard G, Offmann B, Robert C, Rouch C, Cadet F. Assessment of the C(4) phosphoenolpyruvate carboxylase gene diversity in grasses (Poaceae). Theoretical and Applied Genetics. 105: 404-412. PMID 12582545 DOI: 10.1007/S00122-001-0851-7  1
2002 Offmann B, Cadet F. Enzymes As Structural Tool In Infrared Spectroscopy Spectroscopy Letters. 35: 523-526. DOI: 10.1081/Sl-120013888  1
2002 Offmann B, Cadet F. Redox‐active disulfides in a plant light switch: A Pbl problem* Biochemistry and Molecular Biology Education. 30: 249-254. DOI: 10.1002/Bmb.2002.494030040069  1
1997 Cadet F, Robert C, Offmann B. Simultaneous Determination of Sugars by Multivariate Analysis Applied to Mid-Infrared Spectra of Biological Samples Applied Spectroscopy. 51: 369-375. DOI: 10.1366/0003702971940224  1
1997 Cadet F, Offmann B. Direct Spectroscopic Sucrose Determination of Raw Sugar Cane Juices Journal of Agricultural and Food Chemistry. 45: 166-171. DOI: 10.1021/Jf960700G  1
1996 Cadet F, Offmann B. Evidence for Potassium-Sucrose Interaction in Biological Mid-Infrared Spectra by Multidimensional Analysis Spectroscopy Letters. 29: 1353-1365. DOI: 10.1080/00387019608007128  1
1996 Cadet F, Offmann B. Baseline Correction Applied to a Biological: Mid-Infrared Spectra Collection Spectroscopy Letters. 29: 591-607. DOI: 10.1080/00387019608007054  1
1996 Cadet F, Offmann B. Extraction Of Characteristic Bands Of Sugars By Multidimensional Analysis Of Their Infrared Spectra Spectroscopy Letters. 29: 523-536. DOI: 10.1080/00387019608006668  1
1996 Cadet F, Offmann B. Gram-Schmidt Orthogonalization and Elimination of the Effect of Unwanted Component Spectra Applied to a Biological Mid-infrared Spectra Collection Spectroscopy Letters. 29: 901-918. DOI: 10.1080/00387019608001620  1
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