Brett K. Beaulieu-Jones - Publications

Affiliations: 
University of Pennsylvania Perelman School of Medicine 
Area:
Machine Learning, Genomics, Computational Biology

18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Hou J, Zhao R, Gronsbell J, Lin Y, Bonzel CL, Zeng Q, Zhang S, Beaulieu-Jones BK, Weber GM, Jemielita T, Wan SS, Hong C, Cai T, Wen J, Ayakulangara Panickan V, et al. Generate Analysis-Ready Data for Real-world Evidence: Tutorial for Harnessing Electronic Health Records With Advanced Informatic Technologies. Journal of Medical Internet Research. 25: e45662. PMID 37227772 DOI: 10.2196/45662  0.344
2022 Weber GM, Hong C, Xia Z, Palmer NP, Avillach P, L'Yi S, Keller MS, Murphy SN, Gutiérrez-Sacristán A, Bonzel CL, Serret-Larmande A, Neuraz A, Omenn GS, Visweswaran S, Klann JG, ... ... Beaulieu-Jones BK, et al. International comparisons of laboratory values from the 4CE collaborative to predict COVID-19 mortality. Npj Digital Medicine. 5: 74. PMID 35697747 DOI: 10.1038/s41746-022-00601-0  0.494
2022 Bush WS, Wheeler N, Darabos C, Beaulieu-Jones B. Packaging Biocomputing Software to Maximize Distribution and Reuse. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 27: 412-416. PMID 34890169  0.676
2021 Le TT, Gutiérrez-Sacristán A, Son J, Hong C, South AM, Beaulieu-Jones BK, Loh NHW, Luo Y, Morris M, Ngiam KY, Patel LP, Samayamuthu MJ, Schriver E, Tan ALM, Moore J, et al. Multinational characterization of neurological phenotypes in patients hospitalized with COVID-19. Scientific Reports. 11: 20238. PMID 34642371 DOI: 10.1038/s41598-021-99481-9  0.517
2021 Le TT, Gutiérrez-Sacristán A, Son J, Hong C, South AM, Beaulieu-Jones BK, Loh NHW, Luo Y, Morris M, Ngiam KY, Patel LP, Samayamuthu MJ, Schriver E, Tan AL, Moore J, et al. Multinational Prevalence of Neurological Phenotypes in Patients Hospitalized with COVID-19. Medrxiv : the Preprint Server For Health Sciences. PMID 33655281 DOI: 10.1101/2021.01.27.21249817  0.478
2021 Kohane IS, Aronow BJ, Avillach P, Beaulieu-Jones BK, Bellazzi R, Bradford RL, Brat GA, Cannataro M, Cimino JJ, García-Barrio N, Gehlenborg N, Ghassemi M, Gutiérrez-Sacristán A, Hanauer DA, Holmes JH, et al. What Every Reader Should Know About Studies Using Electronic Health Record Data but May be Afraid to Ask. Journal of Medical Internet Research. PMID 33600347 DOI: 10.2196/22219  0.598
2021 Klann JG, Weber GM, Estiri H, Moal B, Avillach P, Hong C, Castro V, Maulhardt T, Tan ALM, Geva A, Beaulieu-Jones BK, Malovini A, South AM, Visweswaran S, Omenn GS, et al. Validation of an Internationally Derived Patient Severity Phenotype to Support COVID-19 Analytics from Electronic Health Record Data. Journal of the American Medical Informatics Association : Jamia. PMID 33566082 DOI: 10.1093/jamia/ocab018  0.574
2021 Weber GM, Hong C, Palmer NP, Avillach P, Murphy SN, Gutiérrez-Sacristán A, Xia Z, Serret-Larmande A, Neuraz A, Omenn GS, Visweswaran S, Klann JG, South AM, Loh NHW, Cannataro M, ... Beaulieu-Jones BK, et al. International Comparisons of Harmonized Laboratory Value Trajectories to Predict Severe COVID-19: Leveraging the 4CE Collaborative Across 342 Hospitals and 6 Countries: A Retrospective Cohort Study. Medrxiv : the Preprint Server For Health Sciences. PMID 33564777 DOI: 10.1101/2020.12.16.20247684  0.502
2020 Brat GA, Weber GM, Gehlenborg N, Avillach P, Palmer NP, Chiovato L, Cimino J, Waitman LR, Omenn GS, Malovini A, Moore JH, Beaulieu-Jones BK, Tibollo V, Murphy SN, Yi SL, et al. International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium. Npj Digital Medicine. 3: 109. PMID 32864472 DOI: 10.1038/s41746-020-00308-0  0.583
2020 Bush WS, Wheeler N, Beaulieu-Jones B, Darabos C. Packaging Biocomputing Software to Maximize Distribution and Reuse. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 25: 739-742. PMID 31797644  0.673
2019 Beaulieu-Jones BK, Wu ZS, Williams C, Lee R, Bhavnani SP, Byrd JB, Greene CS. Privacy-Preserving Generative Deep Neural Networks Support Clinical Data Sharing. Circulation. Cardiovascular Quality and Outcomes. 12: e005122. PMID 31284738 DOI: 10.1161/Circoutcomes.118.005122  0.656
2018 Ching T, Himmelstein DS, Beaulieu-Jones BK, Kalinin AA, Do BT, Way GP, Ferrero E, Agapow PM, Zietz M, Hoffman MM, Xie W, Rosen GL, Lengerich BJ, Israeli J, Lanchantin J, et al. Opportunities and obstacles for deep learning in biology and medicine. Journal of the Royal Society, Interface. 15. PMID 29618526 DOI: 10.1098/Rsif.2017.0387  0.639
2018 Beaulieu-Jones BK, Lavage DR, Snyder JW, Moore JH, Pendergrass SA, Bauer CR. Characterizing and Managing Missing Structured Data in Electronic Health Records: Data Analysis. Jmir Medical Informatics. 6: e11. PMID 29475824 DOI: 10.2196/Medinform.8960  0.69
2018 Beaulieu-Jones BK, Orzechowski P, Moore JH. Mapping Patient Trajectories using Longitudinal Extraction and Deep Learning in the MIMIC-III Critical Care Database. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 23: 123-132. PMID 29218875  0.564
2017 Beaulieu-Jones BK, Greene CS. Reproducibility of computational workflows is automated using continuous analysis. Nature Biotechnology. PMID 28288103 DOI: 10.1038/Nbt.3780  0.672
2016 Beaulieu-Jones BK, Moore JH. MISSING DATA IMPUTATION IN THE ELECTRONIC HEALTH RECORD USING DEEPLY LEARNED AUTOENCODERS. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 22: 207-218. PMID 27896976  0.613
2016 Beaulieu-Jones BK, Greene CS. Semi-Supervised Learning of the Electronic Health Record for Phenotype Stratification. Journal of Biomedical Informatics. PMID 27744022 DOI: 10.1016/J.Jbi.2016.10.007  0.689
2016 Beaulieu-Jones B, Greene C. Reproducible Computational Workflows with Continuous Analysis F1000research. 5. DOI: 10.7490/F1000Research.1112695.1  0.629
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