Dokyoon Kim - Publications

Geisinger Health System 
Data integration, CNV analysis, GxE, GxG, Imaging Genomics

27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Glessner JT, Li J, Desai A, Palmer M, Kim D, Lucas AM, Chang X, Connolly JJ, Almoguera B, Harley JB, Jarvik GP, Ritchie MD, Sleiman PMA, Roden DM, Crosslin D, et al. CNV Association of Diverse Clinical Phenotypes from eMERGE reveals novel disease biology underlying cardiovascular disease. International Journal of Cardiology. PMID 31447229 DOI: 10.1016/j.ijcard.2019.07.058  0.84
2019 Miller JE, Metpally RP, Person TN, Krishnamurthy S, Dasari VR, Shivakumar M, Lavage DR, Cook AM, Carey DJ, Ritchie MD, Kim D, Gogoi R. Correction to: Systematic characterization of germline variants from the DiscovEHR study endometrial carcinoma population. Bmc Medical Genomics. 12: 65. PMID 31118041 DOI: 10.1186/s12920-019-0523-6  0.84
2019 Miller JE, Metpally RP, Person TN, Krishnamurthy S, Dasari VR, Shivakumar M, Lavage DR, Cook AM, Carey DJ, Ritchie MD, Kim D, Gogoi R. Systematic characterization of germline variants from the DiscovEHR study endometrial carcinoma population. Bmc Medical Genomics. 12: 59. PMID 31053132 DOI: 10.1186/s12920-019-0504-9  0.84
2019 Verma SS, Verma A, Kim D, Darabos C. Session Introduction - Pattern Recognition in Biomedical Data: Challenges in putting big data to work. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 24: 1-7. PMID 30864305  0.64
2019 Moore JH, Boland MR, Camara PG, Chervitz H, Gonzalez G, Himes BE, Kim D, Mowery DL, Ritchie MD, Shen L, Urbanowicz RJ, Holmes JH. Preparing next-generation scientists for biomedical big data: artificial intelligence approaches. Personalized Medicine. PMID 30760118 DOI: 10.2217/pme-2018-0145  0.84
2018 Verma A, Bang L, Miller JE, Zhang Y, Lee MTM, Zhang Y, Byrska-Bishop M, Carey DJ, Ritchie MD, Pendergrass SA, Kim D. Human-Disease Phenotype Map Derived from PheWAS across 38,682 Individuals. American Journal of Human Genetics. PMID 30598166 DOI: 10.1016/j.ajhg.2018.11.006  0.84
2018 Li F, Du Y, Liu J, Sun H, Wang J, Li R, Kim D, Hyeon T, Ling D. Responsive Assembly of Upconversion Nanoparticles for pH-Activated and Near-Infrared-Triggered Photodynamic Therapy of Deep Tumors. Advanced Materials (Deerfield Beach, Fla.). e1802808. PMID 29999559 DOI: 10.1002/adma.201802808  0.84
2018 Li R, Kim D, Wheeler HE, Dudek SM, Dolan ME, Ritchie MD. Integration of genetic and functional genomics data to uncover chemotherapeutic induced cytotoxicity. The Pharmacogenomics Journal. PMID 29795408 DOI: 10.1038/s41397-018-0024-6  0.84
2018 Verma SS, Lucas A, Zhang X, Veturi Y, Dudek S, Li B, Li R, Urbanowicz R, Moore JH, Kim D, Ritchie MD. Collective feature selection to identify crucial epistatic variants. Biodata Mining. 11: 5. PMID 29713383 DOI: 10.1186/s13040-018-0168-6  0.84
2018 Hu X, Sun J, Li F, Li R, Wu J, He J, Wang N, Liu J, Wang S, Zhou F, Sun X, Kim D, Hyeon T, Ling D. Renal-Clearable Hollow Bismuth Subcarbonate Nanotubes for Tumor Targeted CT Imaging and Chemoradiotherapy. Nano Letters. PMID 29297694 DOI: 10.1021/acs.nanolett.7b04741  0.84
2017 Hall MA, Wallace J, Lucas A, Kim D, Basile AO, Verma SS, McCarty CA, Brilliant MH, Peissig PL, Kitchner TE, Verma A, Pendergrass SA, Dudek SM, Moore JH, Ritchie MD. PLATO software provides analytic framework for investigating complexity beyond genome-wide association studies. Nature Communications. 8: 1167. PMID 29079728 DOI: 10.1038/s41467-017-00802-2  0.84
2017 Li R, Kim D, Ritchie MD. Methods to analyze big data in pharmacogenomics research. Pharmacogenomics. PMID 28612644 DOI: 10.2217/pgs-2016-0152  0.84
2017 Kim D, Basile AO, Bang L, Horgusluoglu E, Lee S, Ritchie MD, Saykin AJ, Nho K. Knowledge-driven binning approach for rare variant association analysis: application to neuroimaging biomarkers in Alzheimer's disease. Bmc Medical Informatics and Decision Making. 17: 61. PMID 28539126 DOI: 10.1186/s12911-017-0454-0  0.84
2017 Kim D, Volk H, Girirajan S, Pendergrass S, Hall MA, Verma SS, Schmidt RJ, Hansen RL, Ghosh D, Ludena-Rodriguez Y, Kim K, Ritchie MD, Hertz-Picciotto I, Selleck SB. The joint effect of air pollution exposure and copy number variation on risk for autism. Autism Research : Official Journal of the International Society For Autism Research. PMID 28448694 DOI: 10.1002/aur.1799  0.84
2016 Kim D, Li R, Lucas A, Verma SS, Dudek SM, Ritchie MD. Using knowledge-driven genomic interactions for multi-omics data analysis: metadimensional models for predicting clinical outcomes in ovarian carcinoma. Journal of the American Medical Informatics Association : Jamia. PMID 28040685 DOI: 10.1093/jamia/ocw165  0.84
2016 Nho K, Horgusluoglu E, Kim S, Risacher SL, Kim D, Foroud T, Aisen PS, Petersen RC, Jack CR, Shaw LM, Trojanowski JQ, Weiner MW, Green RC, Toga AW, Saykin AJ, et al. Integration of bioinformatics and imaging informatics for identifying rare PSEN1 variants in Alzheimer's disease. Bmc Medical Genomics. 9: 30. PMID 27535542 DOI: 10.1186/s12920-016-0190-9  0.48
2016 Li R, Dudek SM, Kim D, Hall MA, Bradford Y, Peissig PL, Brilliant MH, Linneman JG, McCarty CA, Bao L, Ritchie MD. Identification of genetic interaction networks via an evolutionary algorithm evolved Bayesian network. Biodata Mining. 9: 18. PMID 27168765 DOI: 10.1186/s13040-016-0094-4  0.48
2016 Kim D, Lucas A, Glessner J, Verma SS, Bradford Y, Li R, Frase AT, Hakonarson H, Peissig P, Brilliant M, Ritchie MD. BIOFILTER AS A FUNCTIONAL ANNOTATION PIPELINE FOR COMMON AND RARE COPY NUMBER BURDEN. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 21: 357-68. PMID 26776200  0.84
2015 Kim D, Li R, Dudek SM, Ritchie MD. Predicting censored survival data based on the interactions between meta-dimensional omics data in breast cancer. Journal of Biomedical Informatics. PMID 26048077 DOI: 10.1016/j.jbi.2015.05.019  0.48
2015 Kim D, Li R, Dudek SM, Wallace JR, Ritchie MD. Binning somatic mutations based on biological knowledge for predicting survival: an application in renal cell carcinoma. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 96-107. PMID 25592572  0.48
2015 Ritchie MD, Holzinger ER, Li R, Pendergrass SA, Kim D. Methods of integrating data to uncover genotype-phenotype interactions. Nature Reviews. Genetics. 16: 85-97. PMID 25582081 DOI: 10.1038/nrg3868  0.48
2015 Kim D, Joung JG, Sohn KA, Shin H, Park YR, Ritchie MD, Kim JH. Knowledge boosting: a graph-based integration approach with multi-omics data and genomic knowledge for cancer clinical outcome prediction. Journal of the American Medical Informatics Association : Jamia. 22: 109-20. PMID 25002459 DOI: 10.1136/amiajnl-2013-002481  0.48
2014 Kim D, Li R, Dudek SM, Frase AT, Pendergrass SA, Ritchie MD. Knowledge-driven genomic interactions: an application in ovarian cancer. Biodata Mining. 7: 20. PMID 25214892 DOI: 10.1186/1756-0381-7-20  0.48
2014 Kim D, Shin H, Sohn KA, Verma A, Ritchie MD, Kim JH. Incorporating inter-relationships between different levels of genomic data into cancer clinical outcome prediction. Methods (San Diego, Calif.). 67: 344-53. PMID 24561168 DOI: 10.1016/j.ymeth.2014.02.003  0.48
2014 Oh JJ, Byun SS, Lee SE, Hong SK, Jeong CW, Kim D, Kim HJ, Myung SC. Genetic variations in VDR associated with prostate cancer risk and progression in a Korean population Gene. 533: 86-93. PMID 24120391 DOI: 10.1016/j.gene.2013.09.119  0.48
2013 Kim D, Kim S, Risacher SL, Shen L, Ritchie MD, Weiner MW, Saykin AJ, Nho K. A Graph-Based Integration of Multimodal Brain Imaging Data for the Detection of Early Mild Cognitive Impairment (E-MCI). Multimodal Brain Image Analysis : Third International Workshop, Mbia 2013, Held in Conjunction With Miccai 2013, Nagoya, Japan, September 22, 2013 : Proceedings / Li Shen, Tianming Liu, Pew-Thian Yap, Heng Huang, Dinggang Shen, Carl-Fre.... 8159: 159-169. PMID 25383392 DOI: 10.1007/978-3-319-02126-3_16  0.48
2013 Kim D, Li R, Dudek SM, Ritchie MD. ATHENA: Identifying interactions between different levels of genomic data associated with cancer clinical outcomes using grammatical evolution neural network. Biodata Mining. 6: 23. PMID 24359638 DOI: 10.1186/1756-0381-6-23  0.48
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