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Anna Okula Basile - Publications

Affiliations: 
Pennsylvania State University, State College, PA, United States 
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14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Gustafson JA, Gibson SB, Damaraju N, Zalusky MP, Hoekzema K, Twesigomwe D, Yang L, Snead AA, Richmond PA, De Coster W, Olson ND, Guarracino A, Li Q, Miller AL, Goffena J, ... ... Basile AO, et al. Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation. Medrxiv : the Preprint Server For Health Sciences. PMID 38496498 DOI: 10.1101/2024.03.05.24303792  0.472
2022 Byrska-Bishop M, Evani US, Zhao X, Basile AO, Abel HJ, Regier AA, Corvelo A, Clarke WE, Musunuri R, Nagulapalli K, Fairley S, Runnels A, Winterkorn L, Lowy E, Germer S, et al. High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios. Cell. 185: 3426-3440.e19. PMID 36055201 DOI: 10.1016/j.cell.2022.08.004  0.751
2021 Ebert P, Audano PA, Zhu Q, Rodriguez-Martin B, Porubsky D, Bonder MJ, Sulovari A, Ebler J, Zhou W, Serra Mari R, Yilmaz F, Zhao X, Hsieh P, Lee J, Kumar S, ... ... Basile AO, et al. Haplotype-resolved diverse human genomes and integrated analysis of structural variation. Science (New York, N.Y.). PMID 33632895 DOI: 10.1126/science.abf7117  0.735
2020 Joo YY, Actkins K, Pacheco JA, Basile AO, Carroll R, Crosslin DR, Day F, Denny JC, Velez Edwards DR, Hakonarson H, Harley JB, Hebbring SJ, Ho K, Jarvik GP, Jones M, et al. A polygenic and phenotypic risk prediction for Polycystic Ovary Syndrome evaluated by Phenome-wide association studies. The Journal of Clinical Endocrinology and Metabolism. PMID 31917831 DOI: 10.1210/Clinem/Dgz326  0.618
2019 Zhang X, Basile AO, Pendergrass SA, Ritchie MD. Real world scenarios in rare variant association analysis: the impact of imbalance and sample size on the power in silico. Bmc Bioinformatics. 20: 46. PMID 30669967 DOI: 10.1186/S12859-018-2591-6  0.733
2018 Basile AO, Ritchie MD. Informatics and machine learning to define the phenotype. Expert Review of Molecular Diagnostics. 18: 219-226. PMID 29431517 DOI: 10.1080/14737159.2018.1439380  0.583
2018 Verma SS, Verma A, Basile AO, Bishop MB, Darabos C. Session Introduction: Challenges of Pattern Recognition in Biomedical Data. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 23: 104-110. PMID 29218873  0.738
2018 Basile AO, Byrska-Bishop M, Wallace J, Frase AT, Ritchie MD. Novel features and enhancements in BioBin, a tool for the biologically inspired binning and association analysis of rare variants. Bioinformatics (Oxford, England). 34: 527-529. PMID 28968757 DOI: 10.1093/Bioinformatics/Btx559  0.76
2017 Hall MA, Wallace J, Lucas A, Kim D, Basile AO, Verma SS, McCarty CA, Brilliant MH, Peissig PL, Kitchner TE, Verma A, Pendergrass SA, Dudek SM, Moore JH, Ritchie MD. PLATO software provides analytic framework for investigating complexity beyond genome-wide association studies. Nature Communications. 8: 1167. PMID 29079728 DOI: 10.1038/S41467-017-00802-2  0.679
2017 Kim D, Basile AO, Bang L, Horgusluoglu E, Lee S, Ritchie MD, Saykin AJ, Nho K. Knowledge-driven binning approach for rare variant association analysis: application to neuroimaging biomarkers in Alzheimer's disease. Bmc Medical Informatics and Decision Making. 17: 61. PMID 28539126 DOI: 10.1186/S12911-017-0454-0  0.707
2016 Basile AO, Verma A, Byrska-Bishop M, Pendergrass SA, Darabos C, Lester Kirchner H. PATTERNS IN BIOMEDICAL DATA-HOW DO WE FIND THEM? Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 22: 177-183. PMID 27896973  0.708
2016 Moore CC, Basile AO, Wallace JR, Frase AT, Ritchie MD. A biologically informed method for detecting rare variant associations. Biodata Mining. 9: 27. PMID 27582876 DOI: 10.1186/S13040-016-0107-3  0.593
2016 Verma A, Basile AO, Bradford Y, Kuivaniemi H, Tromp G, Carey D, Gerhard GS, Crowe JE, Ritchie MD, Pendergrass SA. Phenome-Wide Association Study to Explore Relationships between Immune System Related Genetic Loci and Complex Traits and Diseases. Plos One. 11: e0160573. PMID 27508393 DOI: 10.1371/Journal.Pone.0160573  0.73
2016 Basile AO, Wallace JR, Peissig P, McCarty CA, Brilliant M, Ritchie MD. KNOWLEDGE DRIVEN BINNING AND PHEWAS ANALYSIS IN MARSHFIELD PERSONALIZED MEDICINE RESEARCH PROJECT USING BIOBIN. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 21: 249-60. PMID 26776191  0.57
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