Charles Spillane - Publications

Affiliations: 
National University of Ireland Galway, Ireland 

46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Dupouy G, Cashell R, Brychkova G, Tuteja R, McKeown PC, Spillane C. PICKLE RELATED 2 is a Neofunctionalized Gene Duplicate Under Positive Selection With Antagonistic Effects to the Ancestral PICKLE Gene on the Seed Transcriptome. Genome Biology and Evolution. 15. PMID 37931037 DOI: 10.1093/gbe/evad191  0.452
2023 Dwivedi SL, Quiroz LF, Reddy ASN, Spillane C, Ortiz R. Alternative Splicing Variation: Accessing and Exploiting in Crop Improvement Programs. International Journal of Molecular Sciences. 24. PMID 37894886 DOI: 10.3390/ijms242015205  0.365
2023 Dwivedi SL, Heslop-Harrison P, Spillane C, McKeown PC, Edwards D, Goldman I, Ortiz R. Evolutionary dynamics and adaptive benefits of deleterious mutations in crop gene pools. Trends in Plant Science. PMID 36764870 DOI: 10.1016/j.tplants.2023.01.006  0.334
2023 Zumajo-Cardona C, Aguirre M, Castillo-Bravo R, Mizzotti C, Di Marzo M, Banfi C, Mendes MA, Spillane C, Colombo L, Ezquer I. Maternal control of triploid seed development by the TRANSPARENT TESTA 8 (TT8) transcription factor in Arabidopsis thaliana. Scientific Reports. 13: 1316. PMID 36693864 DOI: 10.1038/s41598-023-28252-5  0.514
2022 Castillo-Bravo R, Fort A, Cashell R, Brychkova G, McKeown PC, Spillane C. Parent-of-Origin Effects on Seed Size Modify Heterosis Responses in . Frontiers in Plant Science. 13: 835219. PMID 35330872 DOI: 10.3389/fpls.2022.835219  0.401
2022 Dupouy G, McDermott E, Cashell R, Scian A, McHale M, Ryder P, de Groot J, Lucca N, Brychkova G, McKeown PC, Spillane C. Plastid ribosome protein L5 is essential for post-globular embryo development in Arabidopsis thaliana. Plant Reproduction. PMID 35247095 DOI: 10.1007/s00497-022-00440-9  0.35
2021 Lopez FB, Fort A, Tadini L, Probst AV, McHale M, Friel J, Ryder P, Pontvianne F, Pesaresi P, Sulpice R, McKeown P, Brychkova G, Spillane C. Gene dosage compensation of rRNA transcript levels in Arabidopsis thaliana lines with reduced ribosomal gene copy number. The Plant Cell. PMID 33793816 DOI: 10.1093/plcell/koab020  0.372
2020 McKeown P, Spillane C. An Overview of Current Research in Plant Epigenetic and Epigenomic Phenomena. Methods in Molecular Biology (Clifton, N.J.). 2093: 3-13. PMID 32088885 DOI: 10.1007/978-1-0716-0179-2_1  0.331
2019 Tuteja R, McKeown PC, Ryan P, Morgan CC, Donoghue MTA, Downing T, O'Connell MJ, Spillane C. Paternally expressed imprinted genes under positive Darwinian selection in Arabidopsis thaliana. Molecular Biology and Evolution. PMID 30913563 DOI: 10.1093/Molbev/Msz063  0.46
2018 Azmach G, Menkir A, Spillane C, Gedil M. Genetic Loci Controlling Carotenoid Biosynthesis in Diverse Tropical Maize Lines. G3 (Bethesda, Md.). PMID 29378820 DOI: 10.1534/g3.117.300511  0.372
2017 Fort A, Tuteja R, Braud M, McKeown PC, Spillane C. Parental-genome dosage effects on the transcriptome of F1 hybrid triploid embryos of Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. PMID 29024088 DOI: 10.1111/tpj.13740  0.431
2017 Dwivedi SL, Scheben A, Edwards D, Spillane C, Ortiz R. Assessing and Exploiting Functional Diversity in Germplasm Pools to Enhance Abiotic Stress Adaptation and Yield in Cereals and Food Legumes. Frontiers in Plant Science. 8: 1461. PMID 28900432 DOI: 10.3389/fpls.2017.01461  0.332
2017 Ryder P, McHale M, Fort A, Spillane C. Generation of stable nulliplex autopolyploid lines of Arabidopsis thaliana using CRISPR/Cas9 genome editing. Plant Cell Reports. PMID 28289885 DOI: 10.1007/s00299-017-2125-0  0.416
2017 Kumar APK, McKeown PC, Boualem A, Ryder P, Brychkova G, Bendahmane A, Sarkar A, Chatterjee M, Spillane C. TILLING by Sequencing (TbyS) for targeted genome mutagenesis in crops Molecular Breeding. 37. DOI: 10.1007/S11032-017-0620-1  0.362
2016 Goñi O, Fort A, Quille P, McKeown PC, Spillane C, O'Connell S. Comparative Transcriptome Analysis of Two Ascophyllum nodosum Extract Biostimulants: Same Seaweed but Different. Journal of Agricultural and Food Chemistry. 64: 2980-9. PMID 27010818 DOI: 10.1021/acs.jafc.6b00621  0.307
2016 Pires ND, Bemer M, Müller LM, Baroux C, Spillane C, Grossniklaus U. Quantitative Genetics Identifies Cryptic Genetic Variation Involved in the Paternal Regulation of Seed Development. Plos Genetics. 12: e1005806. PMID 26811909 DOI: 10.1371/Journal.Pgen.1005806  0.759
2016 Fort A, Ryder P, McKeown PC, Wijnen C, Aarts MG, Sulpice R, Spillane C. Disaggregating polyploidy, parental genome dosage and hybridity contributions to heterosis in Arabidopsis thaliana. The New Phytologist. 209: 590-9. PMID 26395035 DOI: 10.1111/nph.13650  0.399
2015 Park SD, Magee DA, McGettigan PA, Teasdale MD, Edwards CJ, Lohan AJ, Murphy A, Braud M, Donoghue MT, Liu Y, Chamberlain AT, Rue-Albrecht K, Schroeder S, Spillane C, Tai S, et al. Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle. Genome Biology. 16: 234. PMID 26498365 DOI: 10.1186/s13059-015-0790-2  0.323
2015 O'Doherty AM, MacHugh DE, Spillane C, Magee DA. Genomic imprinting effects on complex traits in domesticated animal species. Frontiers in Genetics. 6: 156. PMID 25964798 DOI: 10.3389/fgene.2015.00156  0.433
2014 Magee DA, Spillane C, Berkowicz EW, Sikora KM, MacHugh DE. Imprinted loci in domestic livestock species as epigenomic targets for artificial selection of complex traits. Animal Genetics. 25-39. PMID 24990393 DOI: 10.1111/age.12168  0.411
2014 Kagale S, Koh C, Nixon J, Bollina V, Clarke WE, Tuteja R, Spillane C, Robinson SJ, Links MG, Clarke C, Higgins EE, Huebert T, Sharpe AG, Parkin IA. The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure. Nature Communications. 5: 3706. PMID 24759634 DOI: 10.1038/ncomms4706  0.329
2014 McKeown PC, Fort A, Spillane C. Analysis of genomic imprinting by quantitative allele-specific expression by Pyrosequencing(®). Methods in Molecular Biology (Clifton, N.J.). 1112: 85-104. PMID 24478009 DOI: 10.1007/978-1-62703-773-0_6  0.509
2014 McKeown PC, Spillane C. Landscaping plant epigenetics. Methods in Molecular Biology (Clifton, N.J.). 1112: 1-24. PMID 24478004 DOI: 10.1007/978-1-62703-773-0_1  0.36
2014 Donoghue MT, Fort A, Clifton R, Zhang X, McKeown PC, Voigt-Zielinksi ML, Borevitz JO, Spillane C. C(m)CGG methylation-independent parent-of-origin effects on genome-wide transcript levels in isogenic reciprocal F1 triploid plants. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 21: 141-51. PMID 24212467 DOI: 10.1093/Dnares/Dst046  0.402
2012 Sikora KM, Magee DA, Berkowicz EW, Lonergan P, Evans AC, Carter F, Comte A, Waters SM, MacHugh DE, Spillane C. PHLDA2 is an imprinted gene in cattle. Animal Genetics. 43: 587-90. PMID 22497461 DOI: 10.1111/j.1365-2052.2011.02292.x  0.335
2012 Köhler C, Wolff P, Spillane C. Epigenetic mechanisms underlying genomic imprinting in plants Annual Review of Plant Biology. 63: 331-352. PMID 22404470 DOI: 10.1146/Annurev-Arplant-042811-105514  0.699
2012 Varshney RK, Chen W, Li Y, Bharti AK, Saxena RK, Schlueter JA, Donoghue MT, Azam S, Fan G, Whaley AM, Farmer AD, Sheridan J, Iwata A, Tuteja R, Penmetsa RV, ... ... Spillane C, et al. Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology. 30: 83-9. PMID 22057054 DOI: 10.1038/Nbt.2022  0.371
2011 McKeown PC, Laouielle-Duprat S, Prins P, Wolff P, Schmid MW, Donoghue MT, Fort A, Duszynska D, Comte A, Lao NT, Wennblom TJ, Smant G, Köhler C, Grossniklaus U, Spillane C. Identification of imprinted genes subject to parent-of-origin specific expression in Arabidopsis thaliana seeds. Bmc Plant Biology. 11: 113. PMID 21838868 DOI: 10.1186/1471-2229-11-113  0.759
2011 Wolff P, Weinhofer I, Seguin J, Roszak P, Beisel C, Donoghue MT, Spillane C, Nordborg M, Rehmsmeier M, Köhler C. High-resolution analysis of parent-of-origin allelic expression in the Arabidopsis Endosperm. Plos Genetics. 7: e1002126. PMID 21698132 DOI: 10.1371/Journal.Pgen.1002126  0.68
2011 Donoghue MT, Keshavaiah C, Swamidatta SH, Spillane C. Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana. Bmc Evolutionary Biology. 11: 47. PMID 21332978 DOI: 10.1186/1471-2148-11-47  0.354
2010 O'Connell MJ, Loughran NB, Walsh TA, Donoghue MT, Schmid KJ, Spillane C. A phylogenetic approach to test for evidence of parental conflict or gene duplications associated with protein-encoding imprinted orthologous genes in placental mammals. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 21: 486-98. PMID 20931201 DOI: 10.1007/S00335-010-9283-5  0.358
2008 Garnier O, Laouiellé-Duprat S, Spillane C. Genomic imprinting in plants. Advances in Experimental Medicine and Biology. 626: 89-100. PMID 18372793  0.401
2008 Garnier O, Laoueillé-Duprat S, Spillane C. Genomic imprinting in plants. Epigenetics. 3: 14-20. PMID 18259119  0.401
2007 Spillane C, Schmid KJ, Laoueillé-Duprat S, Pien S, Escobar-Restrepo JM, Baroux C, Gagliardini V, Page DR, Wolfe KH, Grossniklaus U. Positive darwinian selection at the imprinted MEDEA locus in plants. Nature. 448: 349-52. PMID 17637669 DOI: 10.1038/Nature05984  0.763
2007 Haun WJ, Laoueillé-Duprat S, O'connell MJ, Spillane C, Grossniklaus U, Phillips AR, Kaeppler SM, Springer NM. Genomic imprinting, methylation and molecular evolution of maize Enhancer of zeste (Mez) homologs. The Plant Journal : For Cell and Molecular Biology. 49: 325-37. PMID 17181776 DOI: 10.1111/J.1365-313X.2006.02965.X  0.585
2007 Spillane C, Schmid KJ, Laoueillé-Duprat S, Pien S, Escobar-Restrepo J, Baroux C, Gagliardini V, Page DR, Wolfe KH, Grossniklaus U. Erratum: Positive darwinian selection at the imprinted MEDEA locus in plants Nature. 450: 450-450. DOI: 10.1038/Nature06439  0.713
2004 Spillane C, Baroux C, Escobar-Restrepo JM, Page DR, Laoueille S, Grossniklaus U. Transposons and tandem repeats are not involved in the control of genomic imprinting at the MEDEA locus in Arabidopsis. Cold Spring Harbor Symposia On Quantitative Biology. 69: 465-75. PMID 16117682 DOI: 10.1101/Sqb.2004.69.465  0.73
2004 Spillane C, Curtis MD, Grossniklaus U. Apomixis technology development-virgin births in farmers' fields? Nature Biotechnology. 22: 687-91. PMID 15175691 DOI: 10.1038/Nbt976  0.546
2004 Collinge MA, Spillane C, Köhler C, Gheyselinck J, Grossniklaus U. Genetic interaction of an origin recognition complex subunit and the Polycomb group gene MEDEA during seed development Plant Cell. 16: 1035-1046. PMID 15020747 DOI: 10.1105/Tpc.019059  0.696
2003 Köhler C, Hennig L, Spillane C, Pien S, Gruissem W, Grossniklaus U. The Polycomb-group protein MEDEA regulates seed development by controlling expression of the MADS-box gene PHERES1 Genes and Development. 17: 1540-1553. PMID 12815071 DOI: 10.1101/Gad.257403  0.713
2002 Baroux C, Spillane C, Grossniklaus U. Evolutionary origins of the endosperm in flowering plants. Genome Biology. 3: reviews1026. PMID 12225592 DOI: 10.1186/Gb-2002-3-9-Reviews1026  0.566
2002 Baroux C, Spillane C, Grossniklaus U. Genomic imprinting during seed development. Advances in Genetics. 46: 165-214. PMID 11931224 DOI: 10.1016/S0065-2660(02)46007-5  0.695
2001 Spillane C, Steimer A, Grossniklaus U. Apomixis in agriculture: the quest for clonal seeds. Sexual Plant Reproduction. 14: 179-87. PMID 24573424 DOI: 10.1007/S00497-001-0117-1  0.55
2001 Grossniklaus U, Spillane C, Page DR, Köhler C. Genomic imprinting and seed development: Endosperm formation with and without sex Current Opinion in Plant Biology. 4: 21-27. PMID 11163163 DOI: 10.1016/S1369-5266(00)00130-8  0.733
2000 Spillane C, MacDougall C, Stock C, Köhler C, Vielle-Calzada JP, Nunes SM, Grossniklaus U, Goodrich J. Interaction of the Arabidopsis polycomb group proteins FIE and MEA mediates their common phenotypes. Current Biology : Cb. 10: 1535-8. PMID 11114524 DOI: 10.1016/S0960-9822(00)00839-3  0.677
1999 Vielle-Calzada JP, Thomas J, Spillane C, Coluccio A, Hoeppner MA, Grossniklaus U. Maintenance of genomic imprinting at the Arabidopsis medea locus requires zygotic DDM1 activity. Genes & Development. 13: 2971-82. PMID 10580004 DOI: 10.1101/Gad.13.22.2971  0.675
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