| Year |
Citation |
Score |
| 2024 |
Sun X, Guo J, Li R, Zhang H, Zhang Y, Liu GE, Emu Q, Zhang H. Whole-Genome Resequencing Reveals Genetic Diversity and Wool Trait-Related Genes in Liangshan Semi-Fine-Wool Sheep. Animals : An Open Access Journal From Mdpi. 14. PMID 38338087 DOI: 10.3390/ani14030444 |
0.325 |
|
| 2022 |
Boschiero C, Gao Y, Baldwin RL, Ma L, Li CJ, Liu GE. Differentially CTCF-Binding Sites in Cattle Rumen Tissue during Weaning. International Journal of Molecular Sciences. 23. PMID 36012336 DOI: 10.3390/ijms23169070 |
0.309 |
|
| 2022 |
Zhou Y, Yang L, Han X, Han J, Hu Y, Li F, Xia H, Peng L, Boschiero C, Rosen BD, Bickhart DM, Zhang S, Guo A, Van Tassell CP, Smith TPL, ... ... Liu GE, et al. Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary history. Genome Research. PMID 35977842 DOI: 10.1101/gr.276550.122 |
0.429 |
|
| 2022 |
Gao Y, Ma L, Liu GE. Initial Analysis of Structural Variation Detections in Cattle Using Long-Read Sequencing Methods. Genes. 13. PMID 35627213 DOI: 10.3390/genes13050828 |
0.334 |
|
| 2022 |
Yang L, Gao Y, Li M, Park KE, Liu S, Kang X, Liu M, Oswalt A, Fang L, Telugu BP, Sattler CG, Li CJ, Cole JB, Seroussi E, Xu L, ... ... Liu GE, et al. Genome-wide recombination map construction from single sperm sequencing in cattle. Bmc Genomics. 23: 181. PMID 35247961 DOI: 10.1186/s12864-022-08415-w |
0.366 |
|
| 2021 |
Nandolo W, Mészáros G, Wurzinger M, Banda LJ, Gondwe TN, Mulindwa HA, Nakimbugwe HN, Clark EL, Woodward-Greene MJ, Liu M, Liu GE, Van Tassell CP, Rosen BD, Sölkner J. Detection of copy number variants in African goats using whole genome sequence data. Bmc Genomics. 22: 398. PMID 34051743 DOI: 10.1186/s12864-021-07703-1 |
0.317 |
|
| 2020 |
Ou X, Liu G, Wu LH. The complete chloroplast genome of (Asphodelaceae), an ornamental and medicinal plant. Mitochondrial Dna. Part B, Resources. 5: 1109-1110. PMID 33366896 DOI: 10.1080/23802359.2020.1726227 |
0.375 |
|
| 2020 |
Liang D, Zhao P, Si J, Fang L, Pairo-Castineira E, Hu X, Xu Q, Hou Y, Gong Y, Liang Z, Tian B, Mao H, Yindee M, Faruque MO, Kongvongxay S, ... ... Liu GE, et al. Genomic Analysis Revealed a Convergent Evolution of LINE-1 in Coat Color: A Case Study in Water Buffaloes (Bubalus bubalis). Molecular Biology and Evolution. PMID 33212507 DOI: 10.1093/molbev/msaa279 |
0.317 |
|
| 2020 |
Yang L, Niu Q, Zhang T, Zhao G, Zhu B, Chen Y, Zhang L, Gao X, Gao H, Liu GE, Li J, Xu L. Genomic sequencing analysis reveals copy number variations and their association with economically important traits in beef cattle. Genomics. PMID 33080318 DOI: 10.1016/j.ygeno.2020.10.012 |
0.352 |
|
| 2020 |
Zhao G, Zhang T, Liu Y, Wang Z, Xu L, Zhu B, Gao X, Zhang L, Gao H, Liu GE, Li J, Xu L. Genome-Wide Assessment of Runs of Homozygosity in Chinese Wagyu Beef Cattle. Animals : An Open Access Journal From Mdpi. 10. PMID 32824035 DOI: 10.3390/ani10081425 |
0.358 |
|
| 2020 |
Kang X, Liu S, Fang L, Lin S, Liu M, Baldwin RL, Liu GE, Li CJ. Data of epigenomic profiling of histone marks and CTCF binding sites in bovine rumen epithelial primary cells before and after butyrate treatment. Data in Brief. 28: 104983. PMID 31890818 DOI: 10.1016/J.Dib.2019.104983 |
0.304 |
|
| 2019 |
Xu L, Zhao G, Yang L, Zhu B, Chen Y, Zhang L, Gao X, Gao H, Liu GE, Li J. Genomic Patterns of Homozygosity in Chinese Local Cattle. Scientific Reports. 9: 16977. PMID 31740716 DOI: 10.1038/s41598-019-53274-3 |
0.307 |
|
| 2019 |
Fang L, Liu S, Liu M, Kang X, Lin S, Li B, Connor EE, Baldwin RL, Tenesa A, Ma L, Liu GE, Li CJ. Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations. Bmc Biology. 17: 68. PMID 31419979 DOI: 10.1186/S12915-019-0687-8 |
0.364 |
|
| 2019 |
Liu M, Fang L, Liu S, Pan MG, Seroussi E, Cole JB, Ma L, Chen H, Liu GE. Array CGH-based detection of CNV regions and their potential association with reproduction and other economic traits in Holsteins. Bmc Genomics. 20: 181. PMID 30845913 DOI: 10.1186/S12864-019-5552-1 |
0.325 |
|
| 2019 |
Liu S, Kang X, Catacchio CR, Liu M, Fang L, Schroeder SG, Li W, Rosen BD, Iamartino D, Iannuzzi L, Sonstegard TS, Van Tassell CP, Ventura M, Low WY, Williams JL, ... ... Liu GE, et al. Computational detection and experimental validation of segmental duplications and associated copy number variations in water buffalo ( Bubalus bubalis ). Functional & Integrative Genomics. PMID 30734132 DOI: 10.1007/S10142-019-00657-4 |
0.413 |
|
| 2018 |
Li W, Bickhart DM, Ramunno L, Iamartino D, Williams JL, Liu GE. Genomic structural differences between cattle and River Buffalo identified through comparative genomic and transcriptomic analysis. Data in Brief. 19: 236-239. PMID 29892639 DOI: 10.1016/J.Dib.2018.05.015 |
0.396 |
|
| 2018 |
Zhao P, Yu Y, Feng W, Du H, Yu J, Kang H, Zheng X, Wang Z, Liu GE, Ernst CW, Ran X, Wang J, Liu JF. Evidence of evolutionary history and selective sweeps in the genome of meishan pig reveals its genetic and phenotypic characterization. Gigascience. PMID 29790964 DOI: 10.1093/gigascience/giy058 |
0.326 |
|
| 2018 |
Li W, Bickhart DM, Ramunno L, Iamartino D, Williams JL, Liu GE. Comparative sequence alignment reveals River Buffalo genomic structural differences compared with cattle. Genomics. PMID 29501677 DOI: 10.1016/J.Ygeno.2018.02.018 |
0.389 |
|
| 2017 |
Yang L, Xu L, Zhu B, Niu H, Zhang W, Miao J, Shi X, Zhang M, Chen Y, Zhang L, Gao X, Gao H, Li L, Liu GE, Li J. Genome-wide analysis reveals differential selection involved with copy number variation in diverse Chinese Cattle. Scientific Reports. 7: 14299. PMID 29085051 DOI: 10.1038/s41598-017-14768-0 |
0.341 |
|
| 2017 |
Yang L, Xu L, Zhou Y, Liu M, Wang L, Kijas JW, Zhang H, Li L, Liu GE. Diversity of copy number variation in a worldwide population of sheep. Genomics. PMID 28917637 DOI: 10.1016/j.ygeno.2017.09.005 |
0.321 |
|
| 2017 |
Gao Y, Jiang J, Yang S, Hou Y, Liu GE, Zhang S, Zhang Q, Sun D. CNV discovery for milk composition traits in dairy cattle using whole genome resequencing. Bmc Genomics. 18: 265. PMID 28356085 DOI: 10.1186/s12864-017-3636-3 |
0.308 |
|
| 2017 |
Xu L, Haasl RJ, Sun J, Zhou Y, Bickhart DM, Li J, Song J, Sonstegard TS, Van Tassell CP, Lewin HA, Liu GE. Systematic Profiling of Short Tandem Repeats in the Cattle Genome. Genome Biology and Evolution. 9: 20-31. PMID 28172841 DOI: 10.1093/Gbe/Evw256 |
0.315 |
|
| 2016 |
Zhou Y, Utsunomiya YT, Xu L, Hay EH, Bickhart DM, Sonstegard TS, Van Tassell CP, Garcia JF, Liu GE. Comparative analyses across cattle genders and breeds reveal the pitfalls caused by false positive and lineage-differential copy number variations. Scientific Reports. 6: 29219. PMID 27381368 DOI: 10.1038/srep29219 |
0.309 |
|
| 2016 |
Bickhart DM, Xu L, Hutchison JL, Cole JB, Null DJ, Schroeder SG, Song J, Garcia JF, Sonstegard TS, Van Tassell CP, Schnabel RD, Taylor JF, Lewin HA, Liu GE. Diversity and population-genetic properties of copy number variations and multicopy genes in cattle. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 27085184 DOI: 10.1093/dnares/dsw013 |
0.37 |
|
| 2015 |
Xu L, Bickhart DM, Cole JB, Schroeder SG, Song J, Tassell CP, Sonstegard TS, Liu GE. Genomic signatures reveal new evidences for selection of important traits in domestic cattle. Molecular Biology and Evolution. 32: 711-25. PMID 25431480 DOI: 10.1093/molbev/msu333 |
0.333 |
|
| 2014 |
Xu L, Hou Y, Bickhart DM, Song J, Van Tassell CP, Sonstegard TS, Liu GE. A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle Functional and Integrative Genomics. 14: 333-339. PMID 24718732 DOI: 10.1007/s10142-014-0371-6 |
0.3 |
|
| 2013 |
Bickhart DM, Liu GE. Identification of candidate transcription factor binding sites in the cattle genome. Genomics, Proteomics & Bioinformatics. 11: 195-8. PMID 23433959 DOI: 10.1016/j.gpb.2012.10.004 |
0.333 |
|
| 2012 |
Liu GE, Bickhart DM. Copy number variation in the cattle genome. Functional & Integrative Genomics. 12: 609-24. PMID 22790923 DOI: 10.1007/s10142-012-0289-9 |
0.392 |
|
| 2012 |
Bickhart DM, Hou Y, Schroeder SG, Alkan C, Cardone MF, Matukumalli LK, Song J, Schnabel RD, Ventura M, Taylor JF, Garcia JF, Van Tassell CP, Sonstegard TS, Eichler EE, Liu GE. Copy number variation of individual cattle genomes using next-generation sequencing. Genome Research. 22: 778-90. PMID 22300768 DOI: 10.1101/Gr.133967.111 |
0.688 |
|
| 2011 |
Partipilo G, D'Addabbo P, Lacalandra GM, Liu GE, Rocchi M. Refinement of Bos taurus sequence assembly based on BAC-FISH experiments. Bmc Genomics. 12: 639. PMID 22208360 DOI: 10.1186/1471-2164-12-639 |
0.329 |
|
| 2011 |
Liu GE, Brown T, Hebert DA, Cardone MF, Hou Y, Choudhary RK, Shaffer J, Amazu C, Connor EE, Ventura M, Gasbarre LC. Initial analysis of copy number variations in cattle selected for resistance or susceptibility to intestinal nematodes. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 22: 111-21. PMID 21125402 DOI: 10.1007/S00335-010-9308-0 |
0.334 |
|
| 2010 |
Liu GE. Applications and case studies of the next-generation sequencing technologies in food, nutrition and agriculture. Recent Patents On Food, Nutrition & Agriculture. 1: 75-9. PMID 20653528 DOI: 10.2174/2212798410901010075 |
0.313 |
|
| 2010 |
Liu GE, Hou Y, Zhu B, Cardone MF, Jiang L, Cellamare A, Mitra A, Alexander LJ, Coutinho LL, Dell'Aquila ME, Gasbarre LC, Lacalandra G, Li RW, Matukumalli LK, Nonneman D, et al. Analysis of copy number variations among diverse cattle breeds. Genome Research. 20: 693-703. PMID 20212021 DOI: 10.1101/gr.105403.110 |
0.536 |
|
| 2009 |
Liu GE, Ventura M, Cellamare A, Chen L, Cheng Z, Zhu B, Li C, Song J, Eichler EE. Analysis of recent segmental duplications in the bovine genome. Bmc Genomics. 10: 571. PMID 19951423 DOI: 10.1186/1471-2164-10-571 |
0.603 |
|
| 2009 |
Yang J, Kong X, Martins-Santos MES, Aleman G, Chaco E, Liu GE, Wu SY, Samols D, Hakimi P, Chiang CM, Hanson RW. Activation of SIRT1 by resveratrol represses transcription of the gene for the cytosolic form of phosphoenolpyruvate carboxykinase (GTP) by deacetylating hepatic nuclear factor 4α Journal of Biological Chemistry. 284: 27042-27053. PMID 19651778 DOI: 10.1074/Jbc.M109.047340 |
0.651 |
|
| 2009 |
Liu GE, Alkan C, Jiang L, Zhao S, Eichler EE. Comparative analysis of Alu repeats in primate genomes. Genome Research. 19: 876-85. PMID 19411604 DOI: 10.1101/Gr.083972.108 |
0.673 |
|
| 2009 |
Gibbs RA, Taylor JF, Van Tassell CP, Barendse W, Eversole KA, Gill CA, Green RD, Hamernik DL, Kappes SM, Lien S, Matukumalli LK, McEwan JC, Nazareth LV, Schnabel RD, ... ... Liu GE, et al. Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science (New York, N.Y.). 324: 528-32. PMID 19390050 DOI: 10.1126/Science.1167936 |
0.307 |
|
| 2009 |
Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigó R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, ... ... Liu GE, et al. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (New York, N.Y.). 324: 522-8. PMID 19390049 DOI: 10.1126/Science.1169588 |
0.728 |
|
| 2008 |
Liu GE, Weirauch MT, Van Tassell CP, Li RW, Sonstegard TS, Matukumalli LK, Connor EE, Hanson RW, Yang J. Identification of Conserved Regulatory Elements in Mammalian Promoter Regions: A Case Study Using the PCK1 Promoter Genomics, Proteomics and Bioinformatics. 6: 129-143. PMID 19329064 DOI: 10.1016/S1672-0229(09)60001-2 |
0.671 |
|
| 2008 |
Liu GE, Van Tassell CP, Sonstegard TS, Li RW, Alexander LJ, Keele JW, Matukumalli LK, Smith TP, Gasbarre LC. Detection of germline and somatic copy number variations in cattle. Developments in Biologicals. 132: 231-237. PMID 18817307 DOI: 10.1159/000317165 |
0.32 |
|
| 2006 |
Liu GE, Adams MD. Genome resources and comparative analysis tools for cardiovascular research Methods in Molecular Medicine. 128: 101-123. PMID 17071992 |
0.336 |
|
| 2006 |
Liu GE, Matukumalli LK, Sonstegard TS, Shade LL, Van Tassell CP. Genomic divergences among cattle, dog and human estimated from large-scale alignments of genomic sequences. Bmc Genomics. 7: 140. PMID 16759380 DOI: 10.1186/1471-2164-7-140 |
0.379 |
|
| 2006 |
She X, Liu G, Ventura M, Zhao S, Misceo D, Roberto R, Cardone MF, Rocchi M, Green ED, Archidiacano N, Eichler EE. A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications. Genome Research. 16: 576-83. PMID 16606706 DOI: 10.1101/Gr.4949406 |
0.69 |
|
| 2004 |
She X, Jiang Z, Clark RA, Liu G, Cheng Z, Tuzun E, Church DM, Sutton G, Halpern AL, Eichler EE. Shotgun sequence assembly and recent segmental duplications within the human genome. Nature. 431: 927-30. PMID 15496912 DOI: 10.1038/Nature03062 |
0.706 |
|
| 2004 |
She X, Horvath JE, Jiang Z, Liu G, Furey TS, Christ L, Clark R, Graves T, Gulden CL, Alkan C, Bailey JA, Sahinalp C, Rocchi M, Haussler D, Wilson RK, et al. The structure and evolution of centromeric transition regions within the human genome. Nature. 430: 857-64. PMID 15318213 DOI: 10.1038/Nature02806 |
0.721 |
|
| 2003 |
Bailey JA, Liu G, Eichler EE. An Alu transposition model for the origin and expansion of human segmental duplications. American Journal of Human Genetics. 73: 823-34. PMID 14505274 DOI: 10.1086/378594 |
0.672 |
|
| 2003 |
Liu G, Li D, Pasumarthy MK, Kowalczyk TH, Gedeon CR, Hyatt SL, Payne JM, Miller TJ, Brunovskis P, Fink TL, Muhammad O, Moen RC, Hanson RW, Cooper MJ. Nanoparticles of compacted DNA transfect postmitotic cells Journal of Biological Chemistry. 278: 32578-32586. PMID 12807905 DOI: 10.1074/Jbc.M305776200 |
0.496 |
|
| 2003 |
Liu G, Zhao S, Bailey JA, Sahinalp SC, Alkan C, Tuzun E, Green ED, Eichler EE. Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome. Genome Research. 13: 358-68. PMID 12618366 DOI: 10.1101/Gr.923303 |
0.713 |
|
| 2001 |
Liu G, Molas M, Grossmann GA, Pasumarthy M, Perales JC, Cooper MJ, Hanson RW. Biological Properties of Poly-L-lysine-DNA Complexes Generated by Cooperative Binding of the Polycation Journal of Biological Chemistry. 276: 34379-34387. PMID 11438546 DOI: 10.1074/Jbc.M105250200 |
0.503 |
|
| 1997 |
Perales JC, Grossmann GA, Molas M, Liu G, Ferkol T, Harpst J, Oda H, Hanson RW. Biochemical and functional characterization of DNA complexes capable of targeting genes to hepatocytes via the asialoglycoprotein receptor Journal of Biological Chemistry. 272: 7398-7407. PMID 9054440 DOI: 10.1074/Jbc.272.11.7398 |
0.504 |
|
| Show low-probability matches. |