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Howook Hwang, Ph.D. - Publications

Affiliations: 
2010 Boston University, Boston, MA, United States 
Area:
Bioinformatics Biology, Biochemistry, General Biophysics
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21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Miller EB, Hwang H, Shelley M, Placzek A, Rodrigues JPGLM, Suto RK, Wang L, Akinsanya K, Abel R. Enabling structure-based drug discovery utilizing predicted models. Cell. 187: 521-525. PMID 38306979 DOI: 10.1016/j.cell.2023.12.034  0.315
2023 Trudeau SJ, Hwang H, Mathur D, Begum K, Petrey D, Murray D, Honig B. PrePCI: A structure- and chemical similarity-informed database of predicted protein compound interactions. Protein Science : a Publication of the Protein Society. e4594. PMID 36776141 DOI: 10.1002/pro.4594  0.46
2017 Hwang H, Dey F, Petrey D, Honig B. Structure-based prediction of ligand-protein interactions on a genome-wide scale. Proceedings of the National Academy of Sciences of the United States of America. PMID 29229851 DOI: 10.1073/Pnas.1705381114  0.593
2015 Hwang H, Petrey D, Honig B. A hybrid method for protein-protein interface prediction. Protein Science : a Publication of the Protein Society. PMID 26178156 DOI: 10.1002/Pro.2744  0.628
2015 Petrey D, Chen TS, Deng L, Garzon JI, Hwang H, Lasso G, Lee H, Silkov A, Honig B. Template-based prediction of protein function. Current Opinion in Structural Biology. 32: 33-8. PMID 25678152 DOI: 10.1016/J.Sbi.2015.01.007  0.465
2014 Pierce BG, Wiehe K, Hwang H, Kim BH, Vreven T, Weng Z. ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers. Bioinformatics (Oxford, England). 30: 1771-3. PMID 24532726 DOI: 10.1093/Bioinformatics/Btu097  0.775
2014 Lensink MF, Moal IH, Bates PA, Kastritis PL, Melquiond AS, Karaca E, Schmitz C, van Dijk M, Bonvin AM, Eisenstein M, Jiménez-García B, Grosdidier S, Solernou A, Pérez-Cano L, Pallara C, ... ... Hwang H, et al. Blind prediction of interfacial water positions in CAPRI. Proteins. 82: 620-32. PMID 24155158 DOI: 10.1002/Prot.24439  0.74
2014 Hwang H, Vreven T, Weng Z. Binding interface prediction by combining protein-protein docking results. Proteins. 82: 57-66. PMID 23836482 DOI: 10.1002/Prot.24354  0.708
2014 Vreven T, Hwang H, Pierce BG, Weng Z. Evaluating template-based and template-free protein-protein complex structure prediction. Briefings in Bioinformatics. 15: 169-76. PMID 23818491 DOI: 10.1093/Bib/Bbt047  0.753
2013 Vreven T, Pierce BG, Hwang H, Weng Z. Performance of ZDOCK in CAPRI rounds 20-26. Proteins. 81: 2175-82. PMID 24123140 DOI: 10.1002/Prot.24432  0.777
2013 Moretti R, Fleishman SJ, Agius R, Torchala M, Bates PA, Kastritis PL, Rodrigues JP, Trellet M, Bonvin AM, Cui M, Rooman M, Gillis D, Dehouck Y, Moal I, Romero-Durana M, ... ... Hwang H, et al. Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions. Proteins. 81: 1980-7. PMID 23843247 DOI: 10.1002/Prot.24356  0.738
2013 Vreven T, Hwang H, Weng Z. Exploring angular distance in protein-protein docking algorithms. Plos One. 8: e56645. PMID 23437194 DOI: 10.1371/Journal.Pone.0056645  0.553
2012 Vreven T, Hwang H, Pierce BG, Weng Z. Prediction of protein-protein binding free energies. Protein Science : a Publication of the Protein Society. 21: 396-404. PMID 22238219 DOI: 10.1002/Pro.2027  0.752
2011 Fleishman SJ, Whitehead TA, Strauch EM, Corn JE, Qin S, Zhou HX, Mitchell JC, Demerdash ON, Takeda-Shitaka M, Terashi G, Moal IH, Li X, Bates PA, Zacharias M, Park H, ... ... Hwang H, et al. Community-wide assessment of protein-interface modeling suggests improvements to design methodology. Journal of Molecular Biology. 414: 289-302. PMID 22001016 DOI: 10.1016/J.Jmb.2011.09.031  0.725
2011 Vreven T, Hwang H, Weng Z. Integrating atom-based and residue-based scoring functions for protein-protein docking. Protein Science : a Publication of the Protein Society. 20: 1576-86. PMID 21739500 DOI: 10.1002/Pro.687  0.671
2011 Hwang H, Vreven T, Whitfield TW, Wiehe K, Weng Z. A machine learning approach for the prediction of protein surface loop flexibility. Proteins. 79: 2467-74. PMID 21633973 DOI: 10.1002/Prot.23070  0.758
2011 Kastritis PL, Moal IH, Hwang H, Weng Z, Bates PA, Bonvin AM, Janin J. A structure-based benchmark for protein-protein binding affinity. Protein Science : a Publication of the Protein Society. 20: 482-91. PMID 21213247 DOI: 10.1002/Pro.580  0.646
2010 Hwang H, Vreven T, Pierce BG, Hung JH, Weng Z. Performance of ZDOCK and ZRANK in CAPRI rounds 13-19 Proteins: Structure, Function and Bioinformatics. 78: 3104-3110. PMID 20936681 DOI: 10.1002/Prot.22764  0.737
2010 Hwang H, Vreven T, Janin J, Weng Z. Protein-protein docking benchmark version 4.0. Proteins. 78: 3111-4. PMID 20806234 DOI: 10.1002/Prot.22830  0.661
2008 Hwang H, Pierce B, Mintseris J, Janin J, Weng Z. Protein-protein docking benchmark version 3.0. Proteins. 73: 705-9. PMID 18491384 DOI: 10.1002/Prot.22106  0.743
2007 Wiehe K, Pierce B, Tong WW, Hwang H, Mintseris J, Weng Z. The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI. Proteins. 69: 719-25. PMID 17803212 DOI: 10.1002/Prot.21747  0.733
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