Benjamin S Glicksberg, PhD - Publications

2012-2017 Icahn School of Medicine at Mount Sinai, New York, NY, United States 
 2017-2019 University of California, San Francisco, San Francisco, CA 
 2019- Genetics and Genomic Sciences Icahn School of Medicine at Mount Sinai, New York, NY, United States 
Clinical Informatics, Genomics, Machine Learning

44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Glicksberg BS, Amadori L, Akers NK, Sukhavasi K, Franzén O, Li L, Belbin GM, Ayers KL, Shameer K, Badgeley MA, Johnson KW, Readhead B, Darrow BJ, Kenny EE, Betsholtz C, et al. Correction to: Integrative analysis of loss-of-function variants in clinical and genomic data reveals novel genes associated with cardiovascular traits. Bmc Medical Genomics. 12: 154. PMID 31684948 DOI: 10.1186/s12920-019-0573-9  1
2019 Glicksberg BS, Oskotsky B, Giangreco N, Thangaraj PM, Rudrapatna V, Datta D, Frazier R, Lee N, Larsen R, Tatonetti NP, Butte AJ. ROMOP: a light-weight R package for interfacing with OMOP-formatted electronic health record data. Jamia Open. 2: 10-14. PMID 31633087 DOI: 10.1093/jamiaopen/ooy059  1
2019 Glicksberg BS, Amadori L, Akers NK, Sukhavasi K, Franzén O, Li L, Belbin GM, Akers KL, Shameer K, Badgeley MA, Johnson KW, Readhead B, Darrow BJ, Kenny EE, Betsholtz C, et al. Integrative analysis of loss-of-function variants in clinical and genomic data reveals novel genes associated with cardiovascular traits. Bmc Medical Genomics. 12: 108. PMID 31345219 DOI: 10.1186/s12920-019-0542-3  1
2019 Badgeley MA, Zech JR, Oakden-Rayner L, Glicksberg BS, Liu M, Gale W, McConnell MV, Percha B, Snyder TM, Dudley JT. Deep learning predicts hip fracture using confounding patient and healthcare variables. Npj Digital Medicine. 2: 31. PMID 31304378 DOI: 10.1038/s41746-019-0105-1  1
2019 Glicksberg BS, Oskotsky B, Thangaraj PM, Giangreco N, Badgeley MA, Johnson KW, Datta D, Rudrapatna V, Rappoport N, Shervey MM, Miotto R, Goldstein TC, Rutenberg E, Frazier R, Lee N, et al. PatientExploreR: an extensible application for dynamic visualization of patient clinical history from Electronic Health Records in the OMOP Common Data Model Title. Bioinformatics (Oxford, England). PMID 31214700 DOI: 10.1093/bioinformatics/btz409  1
2019 Liu AC, Patel K, Vunikili RD, Johnson KW, Abdu F, Belman SK, Glicksberg BS, Tandale P, Fontanez R, Mathew OK, Kasarskis A, Mukherjee P, Subramanian L, Dudley JT, Shameer K. Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognoses. Briefings in Bioinformatics. PMID 31190075 DOI: 10.1093/bib/bbz059  1
2019 Johnson KW, Glicksberg BS, Shameer K, Vengrenyuk Y, Krittanawong C, Russak AJ, Sharma SK, Narula JN, Dudley JT, Kini AS. A transcriptomic model to predict increase in fibrous cap thickness in response to high-dose statin treatment: Validation by serial intracoronary OCT imaging. Ebiomedicine. PMID 31126891 DOI: 10.1016/j.ebiom.2019.05.007  1
2019 Liu K, Newbury PA, Glicksberg BS, Zeng WZD, Paithankar S, Andrechek ER, Chen B. Evaluating cell lines as models for metastatic breast cancer through integrative analysis of genomic data. Nature Communications. 10: 2138. PMID 31092827 DOI: 10.1038/s41467-019-10148-6  1
2019 Han BA, Majumdar S, Calmon FP, Glicksberg BS, Horesh R, Kumar A, Perer A, von Marschall EB, Wei D, Mojsilović A, Varshney KR. Confronting data sparsity to identify potential sources of Zika virus spillover infection among primates. Epidemics. PMID 30902616 DOI: 10.1016/j.epidem.2019.01.005  0.04
2019 Norgeot B, Glicksberg BS, Trupin L, Lituiev D, Gianfrancesco M, Oskotsky B, Schmajuk G, Yazdany J, Butte AJ. Assessment of a Deep Learning Model Based on Electronic Health Record Data to Forecast Clinical Outcomes in Patients With Rheumatoid Arthritis. Jama Network Open. 2: e190606. PMID 30874779 DOI: 10.1001/jamanetworkopen.2019.0606  1
2019 Ichikawa O, Glicksberg BS, Genes N, Kidd BA, Li L, Dudley JT. Lyme Disease Patient Trajectories Learned from Electronic Medical Data for Stratification of Disease Risk and Therapeutic Response. Scientific Reports. 9: 4460. PMID 30872757 DOI: 10.1038/s41598-019-41128-x  1
2019 Johnson KW, De Freitas JK, Glicksberg BS, Bobe JR, Dudley JT. Evaluation of patient re-identification using laboratory test orders and mitigation via latent space variables. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 24: 415-426. PMID 30864342  1
2019 Glicksberg BS, Li L, Chen R, Dudley J, Chen B. Leveraging Big Data to Transform Drug Discovery. Methods in Molecular Biology (Clifton, N.J.). 1939: 91-118. PMID 30848458 DOI: 10.1007/978-1-4939-9089-4_6  1
2019 Zeng WZD, Glicksberg BS, Li Y, Chen B. Selecting precise reference normal tissue samples for cancer research using a deep learning approach. Bmc Medical Genomics. 12: 21. PMID 30704474 DOI: 10.1186/s12920-018-0463-6  1
2019 Norgeot B, Glicksberg BS, Butte AJ. A call for deep-learning healthcare. Nature Medicine. 25: 14-15. PMID 30617337 DOI: 10.1038/s41591-018-0320-3  1
2018 Badgeley MA, Liu M, Glicksberg BS, Shervey M, Zech J, Shameer K, Lehar J, Oermann EK, McConnell MV, Snyder TM, Dudley JT. CANDI: an R package and Shiny app for annotating radiographs and evaluating Computer-Aided Diagnosis. Bioinformatics (Oxford, England). PMID 30304439 DOI: 10.1093/bioinformatics/bty855  1
2018 Shameer K, Perez-Rodriguez MM, Bachar R, Li L, Johnson A, Johnson KW, Glicksberg BS, Smith MR, Readhead B, Scarpa J, Jebakaran J, Kovatch P, Lim S, Goodman W, Reich DL, et al. Pharmacological risk factors associated with hospital readmission rates in a psychiatric cohort identified using prescriptome data mining. Bmc Medical Informatics and Decision Making. 18: 79. PMID 30255805 DOI: 10.1186/s12911-018-0653-3  1
2018 Hu Z, Glicksberg BS, Butte AJ. Robust prediction of clinical outcomes using cytometry data. Bioinformatics (Oxford, England). PMID 30169745 DOI: 10.1093/bioinformatics/bty768  1
2018 Shameer K, Johnson KW, Glicksberg BS, Dudley JT, Sengupta PP. The whole is greater than the sum of its parts: combining classical statistical and machine intelligence methods in medicine. Heart (British Cardiac Society). 104: 1228. PMID 29945951 DOI: 10.1136/heartjnl-2018-313377  1
2018 Shameer K, Dow G, Glicksberg BS, Johnson KW, Ze Y, Tomlinson MS, Readhead B, Dudley JT, Kullo IJ. A Network-Biology Informed Computational Drug Repositioning Strategy to Target Disease Risk Trajectories and Comorbidities of Peripheral Artery Disease. Amia Joint Summits On Translational Science Proceedings. Amia Joint Summits On Translational Science. 2017: 108-117. PMID 29888052  1
2018 Johnson KW, Torres Soto J, Glicksberg BS, Shameer K, Miotto R, Ali M, Ashley E, Dudley JT. Artificial Intelligence in Cardiology. Journal of the American College of Cardiology. 71: 2668-2679. PMID 29880128 DOI: 10.1016/j.jacc.2018.03.521  1
2018 Patel R, Scheinfeldt LB, Sanderford MD, Lanham TR, Tamura K, Platt A, Glicksberg BS, Xu K, Dudley JT, Kumar S. Adaptive landscape of protein variation in human exomes. Molecular Biology and Evolution. PMID 29846678 DOI: 10.1093/molbev/msy107  1
2018 Dobbyn A, Huckins LM, Boocock J, Sloofman LG, Glicksberg BS, Giambartolomei C, Hoffman GE, Perumal TM, Girdhar K, Jiang Y, Raj T, Ruderfer DM, Kramer RS, Pinto D, et al. Landscape of Conditional eQTL in Dorsolateral Prefrontal Cortex and Co-localization with Schizophrenia GWAS. American Journal of Human Genetics. PMID 29805045 DOI: 10.1016/j.ajhg.2018.04.011  0.01
2018 Ayers KL, Glicksberg BS, Garfield AS, Longerich S, White JA, Yang P, Du L, Chittenden TW, Gulcher JR, Roy S, Fiedorek F, Gottesdiener K, Cohen S, North KE, Schadt EE, et al. Melanocortin-4 receptor pathway dysfunction in obesity: Patient stratification aimed at MC4R agonist treatment. The Journal of Clinical Endocrinology and Metabolism. PMID 29726959 DOI: 10.1210/jc.2018-00258  1
2018 Glicksberg BS, Johnson KW, Dudley JT. The next generation of precision medicine: observational studies, electronic health records, biobanks, and continuous monitoring. Human Molecular Genetics. PMID 29659828 DOI: 10.1093/hmg/ddy114  1
2018 Shameer K, Johnson KW, Glicksberg BS, Dudley JT, Sengupta PP. Machine learning in cardiovascular medicine: are we there yet? Heart (British Cardiac Society). PMID 29352006 DOI: 10.1136/heartjnl-2017-311198  1
2018 Johnson KW, Glicksberg BS, Hodos RA, Shameer K, Dudley JT. Causal inference on electronic health records to assess blood pressure treatment targets: an application of the parametric g formula. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 23: 180-191. PMID 29218880  1
2018 Glicksberg BS, Miotto R, Johnson KW, Shameer K, Li L, Chen R, Dudley JT. Automated disease cohort selection using word embeddings from Electronic Health Records. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 23: 145-156. PMID 29218877  0.01
2018 Smith MR, Glicksberg BS, Li L, Chen R, Morishita H, Dudley JT. Loss-of-function of neuroplasticity-related genes confers risk for human neurodevelopmental disorders. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 23: 68-79. PMID 29218870  0.01
2017 Johnson KW, Shameer K, Glicksberg BS, Readhead B, Sengupta PP, Björkegren JLM, Kovacic JC, Dudley JT. Enabling Precision Cardiology Through Multiscale Biology and Systems Medicine. Jacc. Basic to Translational Science. 2: 311-327. PMID 30062151 DOI: 10.1016/j.jacbts.2016.11.010  1
2017 Wang Z, Li L, Glicksberg BS, Israel A, Dudley JT, Ma'ayan A. Predicting Age by Mining Electronic Medical Records with Deep Learning Characterizes Differences between Chronological and Physiological Age. Journal of Biomedical Informatics. PMID 29113935 DOI: 10.1016/j.jbi.2017.11.003  1
2017 Belbin GM, Odgis J, Sorokin EP, Yee MC, Kohli S, Glicksberg BS, Gignoux CR, Wojcik GL, Van Vleck T, Jeff JM, Linderman M, Schurmann C, Ruderfer D, Cai X, Merkelson A, et al. Genetic identification of a common collagen disease in puerto ricans via identity-by-descent mapping in a health system. Elife. 6. PMID 28895531 DOI: 10.7554/eLife.25060  1
2017 Chamaria S, Johnson KW, Vengrenyuk Y, Baber U, Shameer K, Divaraniya AA, Glicksberg BS, Li L, Bhatheja S, Moreno P, Maehara A, Mehran R, Dudley JT, Narula J, Sharma SK, et al. Intracoronary Imaging, Cholesterol Efflux, and Transcriptomics after Intensive Statin Treatment in Diabetes. Scientific Reports. 7: 7001. PMID 28765529 DOI: 10.1038/s41598-017-07029-7  1
2017 Shameer K, Glicksberg BS, Hodos R, Johnson KW, Badgeley MA, Readhead B, Tomlinson MS, O'Connor T, Miotto R, Kidd BA, Chen R, Ma'ayan A, Dudley JT. Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning. Briefings in Bioinformatics. PMID 28200013 DOI: 10.1093/bib/bbw136  1
2016 Ma M, Wang C, Glicksberg BS, Schadt EE, Li SD, Chen R. IDENTIFY CANCER DRIVER GENES THROUGH SHARED MENDELIAN DISEASE PATHOGENIC VARIANTS AND CANCER SOMATIC MUTATIONS. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 22: 473-484. PMID 27896999  1
2016 Ayers KL, Mirshahi UL, Wardeh AH, Murray MF, Hao K, Glicksberg BS, Li S, Carey DJ, Chen R. A loss of function variant in CASP7 protects against Alzheimer's disease in homozygous APOE ε4 allele carriers. Bmc Genomics. 17: 445. PMID 27358062 DOI: 10.1186/s12864-016-2725-z  1
2016 Glicksberg BS, Li L, Badgeley MA, Shameer K, Kosoy R, Beckmann ND, Pho N, Hakenberg J, Ma M, Ayers KL, Hoffman GE, Dan Li S, Schadt EE, Patel CJ, Chen R, et al. Comparative analyses of population-scale phenomic data in electronic medical records reveal race-specific disease networks. Bioinformatics (Oxford, England). 32: i101-i110. PMID 27307606 DOI: 10.1093/bioinformatics/btw282  1
2016 Uzilov AV, Ding W, Fink MY, Antipin Y, Brohl AS, Davis C, Lau CY, Pandya C, Shah H, Kasai Y, Powell J, Micchelli M, Castellanos R, Zhang Z, Linderman M, ... ... Glicksberg BS, et al. Development and clinical application of an integrative genomic approach to personalized cancer therapy. Genome Medicine. 8: 62. PMID 27245685 DOI: 10.1186/s13073-016-0313-0  1
2016 Li L, Lee NJ, Glicksberg BS, Radbill BD, Dudley JT. Data-Driven Identification of Risk Factors of Patient Satisfaction at a Large Urban Academic Medical Center. Plos One. 11: e0156076. PMID 27228056 DOI: 10.1371/journal.pone.0156076  1
2016 Badgeley MA, Shameer K, Glicksberg BS, Tomlinson MS, Levin MA, McCormick PJ, Kasarskis A, Reich DL, Dudley JT. EHDViz: clinical dashboard development using open-source technologies. Bmj Open. 6: e010579. PMID 27013597 DOI: 10.1136/bmjopen-2015-010579  1
2016 Shameer K, Badgeley MA, Miotto R, Glicksberg BS, Morgan JW, Dudley JT. Translational bioinformatics in the era of real-time biomedical, health care and wellness data streams. Briefings in Bioinformatics. PMID 26876889 DOI: 10.1093/bib/bbv118  1
2015 Li L, Cheng WY, Glicksberg BS, Gottesman O, Tamler R, Chen R, Bottinger EP, Dudley JT. Identification of type 2 diabetes subgroups through topological analysis of patient similarity. Science Translational Medicine. 7: 311ra174. PMID 26511511 DOI: 10.1126/scitranslmed.aaa9364  1
2015 Ma M, Ru Y, Chuang LS, Hsu NY, Shi LS, Hakenberg J, Cheng WY, Uzilov A, Ding W, Glicksberg BS, Chen R. Disease-associated variants in different categories of disease located in distinct regulatory elements. Bmc Genomics. 16: S3. PMID 26110593 DOI: 10.1186/1471-2164-16-S8-S3  1
2015 Glicksberg BS, Li L, Cheng WY, Shameer K, Hakenberg J, Castellanos R, Ma M, Shi L, Shah H, Dudley JT, Chen R. An integrative pipeline for multi-modal discovery of disease relationships. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 407-18. PMID 25592600  1
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