Fabrice David - Publications

Affiliations: 
University of Geneva, Geneva, Switzerland 

15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 David FPA, Litovchenko M, Deplancke B, Gardeux V. ASAP 2020 update: an open, scalable and interactive web-based portal for (single-cell) omics analyses. Nucleic Acids Research. PMID 32449934 DOI: 10.1093/Nar/Gkaa412  0.36
2017 Dewhurst-Maridor G, Abegg D, David FPA, Rougemont J, Scott CC, Adibekian A, Riezman H. The SAGA complex, together with transcription factors and the endocytic protein Rvs167p, coordinate the reprofiling of gene expression in response to changes in sterol composition in Saccharomyces cerevisiae. Molecular Biology of the Cell. PMID 28768829 DOI: 10.1091/Mbc.E17-03-0169  0.36
2017 Gardeux V, David FPA, Shajkofci A, Schwalie PC, Deplancke B. ASAP: a Web-based platform for the analysis and interactive visualization of single-cell RNA-seq data. Bioinformatics (Oxford, England). PMID 28541377 DOI: 10.1093/Bioinformatics/Btx337  0.36
2017 David FP, Rougemont J, Deplancke B. GETPrime 2.0: gene- and transcript-specific qPCR primers for 13 species including polymorphisms. Nucleic Acids Research. 45: D56-D60. PMID 28053161 DOI: 10.1093/Nar/Gkw913  0.36
2016 Bultet LA, Aguilar-Rodríguez J, Ahrens CH, Ahrné EL, Ai N, Aimo L, Akalin A, Aleksiev T, Alocci D, Altenhoff A, Alves I, Ambrosini G, Pedone PA, Angelino P, Anisimova M, ... ... David F, et al. The SIB Swiss Institute of bioinformatics' resources: Focus on curated databases Nucleic Acids Research. 44: D27-D37. DOI: 10.1093/nar/gkv1310  0.36
2015 Aimo L, Liechti R, Hyka-Nouspikel N, Niknejad A, Gleizes A, Götz L, Kuznetsov D, David FPA, Van Der Goot FG, Riezman H, Bougueleret L, Xenarios I, Bridge A. The SwissLipids knowledgebase for lipid biology Bioinformatics. 31: 2860-2866. DOI: 10.1093/bioinformatics/btv285  0.36
2014 Bonhoure N, Bounova G, Bernasconi D, Praz V, Lammers F, Canella D, Willis IM, Herr W, Hernandez N, Delorenzi M, Deplancke B, Desvergne B, Guex N, Naef F, Rougemont J, ... ... David F, et al. Quantifying ChIP-seq data: A spiking method providing an internal reference for sample-to-sample normalization Genome Research. 24: 1157-1168. PMID 24709819 DOI: 10.1101/Gr.168260.113  0.36
2014 Gilardi F, Migliavacca E, Naldi A, Baruchet M, Canella D, Le Martelot G, Guex N, Desvergne B, Delorenzi M, Deplancke B, Herr W, Naef F, Rougemont J, Schibler U, Andersin T, ... ... David F, et al. Genome-Wide Analysis of SREBP1 Activity around the Clock Reveals Its Combined Dependency on Nutrient and Circadian Signals Plos Genetics. 10. PMID 24603613 DOI: 10.1371/journal.pgen.1004155  0.36
2014 David FPA, Delafontaine J, Carat S, Ross FJ, Lefebvre G, Jarosz Y, Sinclair L, Noordermeer D, Rougemont J, Leleu M. HTSstation: A web application and open-access libraries for high-throughput sequencing data analysis Plos One. 9. PMID 24475057 DOI: 10.1371/Journal.Pone.0085879  0.36
2013 Buchon N, Osman D, David FP, Fang HY, Boquete JP, Deplancke B, Lemaitre B. Morphological and molecular characterization of adult midgut compartmentalization in Drosophila. Cell Reports. 3: 1725-38. PMID 23643535 DOI: 10.1016/J.CELREP.2013.05.019  0.36
2012 Canella D, Bernasconi D, Gilardi F, LeMartelot G, Migliavacca E, Praz V, Cousin P, Delorenzi M, Hernandez N. A multiplicity of factors contributes to selective RNA polymerase III occupancy of a subset of RNA polymerase III genes in mouse liver. Genome Research. 22: 666-80. PMID 22287103 DOI: 10.1101/Gr.130286.111  0.36
2011 Gubelmann C, Gattiker A, Massouras A, Hens K, David F, Decouttere F, Rougemont J, Deplancke B. GETPrime: a gene- or transcript-specific primer database for quantitative real-time PCR. Database : the Journal of Biological Databases and Curation. 2011: bar040. PMID 21917859 DOI: 10.1093/Database/Bar040  0.36
2010 Mottaz A, David FP, Veuthey AL, Yip YL. Easy retrieval of single amino-acid polymorphisms and phenotype information using SwissVar. Bioinformatics (Oxford, England). 26: 851-2. PMID 20106818 DOI: 10.1093/bioinformatics/btq028  0.36
2008 David FP, Yip YL. SSMap: a new UniProt-PDB mapping resource for the curation of structural-related information in the UniProt/Swiss-Prot Knowledgebase. Bmc Bioinformatics. 9: 391. PMID 18811932 DOI: 10.1186/1471-2105-9-391  0.36
2008 Yip YL, Famiglietti M, Gos A, Duek PD, David FP, Gateau A, Bairoch A. Annotating single amino acid polymorphisms in the UniProt/Swiss-Prot knowledgebase. Human Mutation. 29: 361-6. PMID 18175334 DOI: 10.1002/Humu.20671  0.36
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