| Year |
Citation |
Score |
| 2014 |
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD, Shen Y, Pervouchine DD, Djebali S, Thurman RE, Kaul R, ... ... Rasmussen MD, et al. A comparative encyclopedia of DNA elements in the mouse genome. Nature. 515: 355-64. PMID 25409824 DOI: 10.1038/Nature13992 |
0.776 |
|
| 2014 |
Rasmussen MD, Hubisz MJ, Gronau I, Siepel A. Genome-wide inference of ancestral recombination graphs. Plos Genetics. 10: e1004342. PMID 24831947 DOI: 10.1371/Journal.Pgen.1004342 |
0.693 |
|
| 2014 |
Wu YC, Rasmussen MD, Bansal MS, Kellis M. Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees. Genome Research. 24: 475-86. PMID 24310000 DOI: 10.1101/Gr.161968.113 |
0.721 |
|
| 2013 |
Wu YC, Rasmussen MD, Bansal MS, Kellis M. TreeFix: statistically informed gene tree error correction using species trees. Systematic Biology. 62: 110-20. PMID 22949484 DOI: 10.1093/Sysbio/Sys076 |
0.743 |
|
| 2012 |
Choi SC, Rasmussen MD, Hubisz MJ, Gronau I, Stanhope MJ, Siepel A. Replacing and additive horizontal gene transfer in Streptococcus. Molecular Biology and Evolution. 29: 3309-20. PMID 22617954 DOI: 10.1093/Molbev/Mss138 |
0.678 |
|
| 2012 |
Rasmussen MD, Kellis M. Unified modeling of gene duplication, loss, and coalescence using a locus tree. Genome Research. 22: 755-65. PMID 22271778 DOI: 10.1101/Gr.123901.111 |
0.601 |
|
| 2012 |
Wu YC, Rasmussen MD, Kellis M. Evolution at the subgene level: domain rearrangements in the Drosophila phylogeny. Molecular Biology and Evolution. 29: 689-705. PMID 21900599 DOI: 10.1093/Molbev/Msr222 |
0.576 |
|
| 2011 |
Lindblad-Toh K, Garber M, Zuk O, Lin MF, Parker BJ, Washietl S, Kheradpour P, Ernst J, Jordan G, Mauceli E, Ward LD, Lowe CB, Holloway AK, Clamp M, Gnerre S, ... ... Rasmussen MD, et al. A high-resolution map of human evolutionary constraint using 29 mammals. Nature. 478: 476-82. PMID 21993624 DOI: 10.1038/Nature10530 |
0.59 |
|
| 2011 |
Rasmussen MD, Kellis M. A Bayesian approach for fast and accurate gene tree reconstruction. Molecular Biology and Evolution. 28: 273-90. PMID 20660489 DOI: 10.1093/Molbev/Msq189 |
0.634 |
|
| 2009 |
Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, Agrafioti I, Arnaud MB, Bates S, Brown AJ, Brunke S, et al. Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature. 459: 657-62. PMID 19465905 DOI: 10.1038/Nature08064 |
0.648 |
|
| 2008 |
Lin MF, Deoras AN, Rasmussen MD, Kellis M. Performance and scalability of discriminative metrics for comparative gene identification in 12 Drosophila genomes. Plos Computational Biology. 4: e1000067. PMID 18421375 DOI: 10.1371/Journal.Pcbi.1000067 |
0.688 |
|
| 2007 |
Stark A, Lin MF, Kheradpour P, Pedersen JS, Parts L, Carlson JW, Crosby MA, Rasmussen MD, Roy S, Deoras AN, Ruby JG, Brennecke J, Hodges E, et al. Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature. 450: 219-32. PMID 17994088 DOI: 10.1038/Nature06340 |
0.763 |
|
| 2007 |
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Rasmussen MD, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341 |
0.795 |
|
| 2007 |
Rasmussen MD, Kellis M. Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes. Genome Research. 17: 1932-42. PMID 17989260 DOI: 10.1101/Gr.7105007 |
0.723 |
|
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