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Varodom Charoensawan - Publications

Affiliations: 
2013-2015 University of Cambridge, Cambridge, England, United Kingdom 
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Hepkema J, Lee NK, Stewart BJ, Ruangroengkulrith S, Charoensawan V, Clatworthy MR, Hemberg M. Predicting the impact of sequence motifs on gene regulation using single-cell data. Genome Biology. 24: 189. PMID 37582793 DOI: 10.1186/s13059-023-03021-9  0.322
2023 Arora JK, Opasawatchai A, Teichmann SA, Matangkasombut P, Charoensawan V. Computational workflow for investigating highly variable genes in single-cell RNA-seq across multiple time points and cell types. Star Protocols. 4: 102387. PMID 37379219 DOI: 10.1016/j.xpro.2023.102387  0.458
2022 Arora JK, Opasawatchai A, Poonpanichakul T, Jiravejchakul N, Sungnak W, Matangkasombut O, Teichmann SA, Matangkasombut P, Charoensawan V. Single-cell temporal analysis of natural dengue infection reveals skin-homing lymphocyte expansion one day before defervescence. Iscience. 25: 104034. PMID 35345453 DOI: 10.1016/j.isci.2022.104034  0.438
2022 Sriden N, Charoensawan V. Large-scale comparative transcriptomic analysis of temperature-responsive genes in Arabidopsis thaliana. Plant Molecular Biology. PMID 34973146 DOI: 10.1007/s11103-021-01223-y  0.47
2021 Jenkitkonchai J, Marriott P, Yang W, Sriden N, Jung JH, Wigge PA, Charoensawan V. Exploring contribution to early flowering in plants under daily variable temperature and its tissue-specific flowering gene network. Plant Direct. 5: e339. PMID 34355114 DOI: 10.1002/pld3.339  0.785
2019 Tong M, Lee K, Ezer D, Cortijo S, Jung J, Charoensawan V, Box MS, Jaeger K, Takahashi N, Mas P, Wigge PA, Seo PJ. The Evening Complex establishes repressive chromatin domains via H2A.Z deposition. Plant Physiology. PMID 31712305 DOI: 10.1104/Pp.19.00881  0.754
2019 Udom N, Chansongkrow P, Charoensawan V, Auesukaree C. Coordination of the cell wall integrity and high osmolarity glycerol pathways in response to ethanol stress in . Applied and Environmental Microbiology. PMID 31101611 DOI: 10.1128/Aem.00551-19  0.318
2018 Shiao MS, Chiablaem K, Charoensawan V, Ngamphaiboon N, Jinawath N. Emergence of Intrahepatic Cholangiocarcinoma: How High-Throughput Technologies Expedite the Solutions for a Rare Cancer Type. Frontiers in Genetics. 9: 309. PMID 30158952 DOI: 10.3389/Fgene.2018.00309  0.318
2018 Nounjan N, Chansongkrow P, Charoensawan V, Siangliw JL, Toojinda T, Chadchawan S, Theerakulpisut P. High Performance of Photosynthesis and Osmotic Adjustment Are Associated With Salt Tolerance Ability in Rice Carrying Drought Tolerance QTL: Physiological and Co-expression Network Analysis. Frontiers in Plant Science. 9: 1135. PMID 30127798 DOI: 10.3389/Fpls.2018.01135  0.386
2018 Traewachiwiphak S, Yokthongwattana C, Ves-Urai P, Charoensawan V, Yokthongwattana K. Gene expression and promoter characterization of heat-shock protein 90B gene (HSP90B) in the model unicellular green alga Chlamydomonas reinhardtii. Plant Science : An International Journal of Experimental Plant Biology. 272: 107-116. PMID 29807581 DOI: 10.1016/J.Plantsci.2018.04.010  0.421
2018 Cortijo S, Charoensawan V, Roudier F, Wigge PA. Chromatin Immunoprecipitation Sequencing (ChIP-Seq) for Transcription Factors and Chromatin Factors in Arabidopsis thaliana Roots: From Material Collection to Data Analysis. Methods in Molecular Biology (Clifton, N.J.). 1761: 231-248. PMID 29525962 DOI: 10.1007/978-1-4939-7747-5_18  0.684
2018 Dickinson PJ, Kumar M, Martinho C, Yoo SJ, Lan H, Artavanis G, Charoensawan V, Schöttler MA, Bock R, Jaeger KE, Wigge PA. Chloroplast Signaling Gates Thermotolerance in Arabidopsis. Cell Reports. 22: 1657-1665. PMID 29444421 DOI: 10.1016/J.Celrep.2018.01.054  0.764
2017 Cortijo S, Charoensawan V, Brestovitsky A, Buning R, Ravarani C, Rhodes D, van Noort J, Jaeger KE, Wigge PA. Transcriptional regulation of the ambient temperature response by H2A.Z-nucleosomes and HSF1 transcription factors in Arabidopsis. Molecular Plant. PMID 28893714 DOI: 10.1016/J.Molp.2017.08.014  0.794
2017 Ezer D, Shepherd SJ, Brestovitsky A, Dickinson P, Cortijo S, Charoensawan V, Box MS, Biswas S, Jaeger K, Wigge PA. The G-box transcriptional regulatory code in Arabidopsis. Plant Physiology. PMID 28864470 DOI: 10.1104/Pp.17.01086  0.677
2017 Ezer D, Jung JH, Lan H, Biswas S, Gregoire L, Box MS, Charoensawan V, Cortijo S, Lai X, Stöckle D, Zubieta C, Jaeger KE, Wigge PA. The evening complex coordinates environmental and endogenous signals in Arabidopsis. Nature Plants. 3: 17087. PMID 28650433 DOI: 10.1038/Nplants.2017.87  0.72
2016 Jinawath N, Bunbanjerdsuk S, Chayanupatkul M, Ngamphaiboon N, Asavapanumas N, Svasti J, Charoensawan V. Bridging the gap between clinicians and systems biologists: from network biology to translational biomedical research. Journal of Translational Medicine. 14: 324. PMID 27876057 DOI: 10.1186/S12967-016-1078-3  0.312
2016 Jung JH, Domijan M, Klose C, Biswas S, Ezer D, Gao M, Khattak AK, Box MS, Charoensawan V, Cortijo S, Kumar M, Grant A, Locke JC, Schäfer E, Jaeger KE, et al. Phytochromes function as thermosensors in Arabidopsis. Science (New York, N.Y.). PMID 27789797 DOI: 10.1126/Science.Aaf6005  0.683
2016 Yang W, Schuster C, Beahan CT, Charoensawan V, Peaucelle A, Bacic A, Doblin MS, Wightman R, Meyerowitz EM. Regulation of Meristem Morphogenesis by Cell Wall Synthases in Arabidopsis. Current Biology : Cb. PMID 27212401 DOI: 10.1016/J.Cub.2016.04.026  0.342
2015 Charoensawan V, Martinho C, Wigge PA. "Hit-and-run": Transcription factors get caught in the act. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 37: 748-54. PMID 26010075 DOI: 10.1002/Bies.201400186  0.71
2013 Chutoam P, Charoensawan V, Wongtrakoongate P, Kum-Arth A, Buphamalai P, Tungpradabkul S. RpoS and oxidative stress conditions regulate succinyl-CoA: 3-ketoacid-coenzyme A transferase (SCOT) expression in Burkholderia pseudomallei. Microbiology and Immunology. 57: 605-15. PMID 23808410 DOI: 10.1111/1348-0421.12077  0.311
2012 Teichmann SA, Wigge PA, Charoensawan V. Uncovering the interplay between DNA sequence preferences of transcription factors and nucleosomes. Cell Cycle (Georgetown, Tex.). 11: 4487-8. PMID 23165207 DOI: 10.4161/Cc.22666  0.734
2012 Charoensawan V, Janga SC, Bulyk ML, Babu MM, Teichmann SA. DNA sequence preferences of transcriptional activators correlate more strongly than repressors with nucleosomes. Molecular Cell. 47: 183-92. PMID 22841002 DOI: 10.1016/J.Molcel.2012.06.028  0.568
2011 Hebenstreit D, Fang M, Gu M, Charoensawan V, van Oudenaarden A, Teichmann SA. RNA sequencing reveals two major classes of gene expression levels in metazoan cells. Molecular Systems Biology. 7: 497. PMID 21654674 DOI: 10.1038/Msb.2011.28  0.537
2010 Charoensawan V, Adryan B, Martin S, Söllner C, Thisse B, Thisse C, Wright GJ, Teichmann SA. The impact of gene expression regulation on evolution of extracellular signaling pathways. Molecular & Cellular Proteomics : McP. 9: 2666-77. PMID 20935258 DOI: 10.1074/Mcp.M110.003020  0.553
2010 Martin S, Söllner C, Charoensawan V, Adryan B, Thisse B, Thisse C, Teichmann S, Wright GJ. Construction of a large extracellular protein interaction network and its resolution by spatiotemporal expression profiling. Molecular & Cellular Proteomics : McP. 9: 2654-65. PMID 20802085 DOI: 10.1074/Mcp.M110.004119  0.526
2010 Charoensawan V, Wilson D, Teichmann SA. Genomic repertoires of DNA-binding transcription factors across the tree of life. Nucleic Acids Research. 38: 7364-77. PMID 20675356 DOI: 10.1093/Nar/Gkq617  0.574
2010 Charoensawan V, Wilson D, Teichmann SA. Lineage-specific expansion of DNA-binding transcription factor families. Trends in Genetics : Tig. 26: 388-93. PMID 20675012 DOI: 10.1016/J.Tig.2010.06.004  0.555
2009 Martin S, Charoensawan V, Soellner C, Adryan B, Thisse B, Thisse C, Teichmann S, Wright G. 18-P009 Regulation and evolution of an extracellular glycoprotein interaction network Mechanisms of Development. 126: S287. DOI: 10.1016/J.Mod.2009.06.776  0.502
2008 Wilson D, Charoensawan V, Kummerfeld SK, Teichmann SA. DBD--taxonomically broad transcription factor predictions: new content and functionality. Nucleic Acids Research. 36: D88-92. PMID 18073188 DOI: 10.1093/Nar/Gkm964  0.572
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