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Andrea Ramirez - Publications

Affiliations: 
Biomedical Informatics Vanderbilt University School of Medicine, Nashville, TN, United States 
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Shuey MM, Stead WW, Aka I, Barnado AL, Bastarache JA, Brokamp E, Campbell M, Carroll RJ, Goldstein JA, Lewis A, Malow BA, Mosley JD, Osterman T, Padovani-Claudio DA, Ramirez A, et al. Next-generation phenotyping: introducing phecodeX for enhanced discovery research in medical phenomics. Bioinformatics (Oxford, England). 39. PMID 37930895 DOI: 10.1093/bioinformatics/btad655  0.736
2023 Schlueter DJ, Sulieman L, Mo H, Keaton JM, Ferrara TM, Williams A, Qian J, Stubblefield O, Zeng C, Tran TC, Bastarache L, Dai J, Babbar A, Ramirez A, Goleva SB, et al. Systematic replication of smoking disease associations using survey responses and EHR data in the All of Us Research Program. Journal of the American Medical Informatics Association : Jamia. PMID 37885303 DOI: 10.1093/jamia/ocad205  0.746
2023 Mayo KR, Basford MA, Carroll RJ, Dillon M, Fullen H, Leung J, Master H, Rura S, Sulieman L, Kennedy N, Banks E, Bernick D, Gauchan A, Lichtenstein L, Mapes BM, ... ... Ramirez A, et al. The Data and Research Center: Creating a Secure, Scalable, and Sustainable Ecosystem for Biomedical Research. Annual Review of Biomedical Data Science. 6: 443-464. PMID 37561600 DOI: 10.1146/annurev-biodatasci-122120-104825  0.736
2022 Brandt PS, Kho A, Luo Y, Pacheco JA, Walunas TL, Hakonarson H, Hripcsak G, Liu C, Shang N, Weng C, Walton N, Carrell DS, Crane PK, Larson EB, Chute CG, ... ... Ramirez A, et al. Characterizing variability of electronic health record-driven phenotype definitions. Journal of the American Medical Informatics Association : Jamia. PMID 36474423 DOI: 10.1093/jamia/ocac235  0.763
2022 Miller CN, Althoff KN, Schlueter DJ, Anton-Culver H, Chen Q, Garbett S, Ratsimbazafy F, Thomsen I, Karlson EW, Cicek M, Pinto LA, Malin BA, Ohno-Machado L, Williams C, Goldstein D, ... ... Ramirez A, et al. Concordance of SARS-CoV-2 Antibody Results during a Period of Low Prevalence. Msphere. e0025722. PMID 36173112 DOI: 10.1128/msphere.00257-22  0.434
2022 Ramirez AH, Sulieman L, Schlueter DJ, Halvorson A, Qian J, Ratsimbazafy F, Loperena R, Mayo K, Basford M, Deflaux N, Muthuraman KN, Natarajan K, Kho A, Xu H, Wilkins C, et al. The Research Program: Data quality, utility, and diversity. Patterns (New York, N.Y.). 3: 100570. PMID 36033590 DOI: 10.1016/j.patter.2022.100570  0.773
2022 Sulieman L, Cronin RM, Carroll RJ, Natarajan K, Marginean K, Mapes B, Roden D, Harris P, Ramirez A. Comparing medical history data derived from electronic health records and survey answers in the All of Us Research Program. Journal of the American Medical Informatics Association : Jamia. PMID 35396991 DOI: 10.1093/jamia/ocac046  0.781
2022 Yu J, Pacheco JA, Ghosh AS, Luo Y, Weng C, Shang N, Benoit B, Carrell DS, Carroll RJ, Dikilitas O, Freimuth RR, Gainer VS, Hakonarson H, Hripcsak G, Kullo IJ, ... ... Ramirez AH, et al. Under-specification as the source of ambiguity and vagueness in narrative phenotype algorithm definitions. Bmc Medical Informatics and Decision Making. 22: 23. PMID 35090449 DOI: 10.1186/s12911-022-01759-z  0.633
2021 Karnes JH, Arora A, Feng J, Steiner HE, Sulieman L, Boerwinkle E, Clark C, Cicek M, Cohn E, Gebo K, Loperena-Cortes R, Ohno-Machado L, Mayo K, Mockrin S, Ramirez A, et al. Racial, ethnic, and gender differences in obesity and body fat distribution: An All of Us Research Program demonstration project. Plos One. 16: e0255583. PMID 34358277 DOI: 10.1371/journal.pone.0255583  0.697
2021 Chandler PD, Clark CR, Zhou G, Noel NL, Achilike C, Mendez L, Ramirez AH, Loperena-Cortes R, Mayo K, Cohn E, Ohno-Machado L, Boerwinkle E, Cicek M, Qian J, Schully S, et al. Hypertension prevalence in the All of Us Research Program among groups traditionally underrepresented in medical research. Scientific Reports. 11: 12849. PMID 34158555 DOI: 10.1038/s41598-021-92143-w  0.316
2021 Althoff KN, Schlueter DJ, Anton-Culver H, Cherry J, Denny JC, Thomsen I, Karlson EW, Havers FP, Cicek MS, Thibodeau SN, Pinto LA, Lowy D, Malin BA, Ohno-Machado L, Williams C, ... ... Ramirez A, et al. Antibodies to SARS-CoV-2 in All of Us Research Program Participants, January 2-March 18, 2020. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 34128970 DOI: 10.1093/cid/ciab519  0.584
2021 Cronin RM, Halvorson AE, Springer C, Feng X, Sulieman L, Loperena-Cortes R, Mayo K, Carroll RJ, Chen Q, Ahmedani BK, Karnes J, Korf B, O'Donnell CJ, Qian J, Ramirez AH. Comparison of family health history in surveys vs electronic health record data mapped to the observational medical outcomes partnership data model in the All of Us Research Program. Journal of the American Medical Informatics Association : Jamia. PMID 33404595 DOI: 10.1093/jamia/ocaa315  0.779
2020 Tilden DR, Sheehan JH, Newman JH, Meiler J, Capra JA, Ramirez A, Simmons J, Dahir K. Phenotypic Profiling in Subjects Heterozygous for 1 of 2 Rare Variants in the Hypophosphatasia Gene (). Journal of the Endocrine Society. 4: bvaa084. PMID 32803091 DOI: 10.1210/Jendso/Bvaa084  0.302
2020 Zhang Y, Ho K, Keaton JM, Hartzel DN, Day F, Justice AE, Josyula NS, Pendergrass SA, Actkins K, Davis LK, Velez Edwards DR, Holohan B, Ramirez A, Stanaway IB, Crosslin DR, et al. A genome-wide association study of polycystic ovary syndrome identified from electronic health records. American Journal of Obstetrics and Gynecology. PMID 32289280 DOI: 10.1016/J.Ajog.2020.04.004  0.351
2020 SULIEMAN L, RAMIREZ A. 1454-P: Identifying Maturity-Onset Diabetes of the Young in Electronic Health Records Diabetes. 69: 1454-P. DOI: 10.2337/Db20-1454-P  0.727
2020 Sulieman L, He J, Carroll R, Bastarache L, Ramirez A. SAT-LB111 Improving Classification of Diabetes Etiology in Electronic Resources Using Phenotype Algorithms and Polygenic Risk Scores Journal of the Endocrine Society. 4. DOI: 10.1210/Jendso/Bvaa046.2239  0.77
2019 Peterson JF, Roden DM, Orlando LA, Ramirez AH, Mensah GA, Williams MS. Building evidence and measuring clinical outcomes for genomic medicine. Lancet (London, England). PMID 31395443 DOI: 10.1016/S0140-6736(19)31278-4  0.348
2018 Taylor DL, Knowles DA, Scott LJ, Ramirez AH, Casale FP, Wolford BN, Guan L, Varshney A, Albanus RD, Parker SCJ, Narisu N, Chines PS, Erdos MR, Welch RP, Kinnunen L, et al. Interactions between genetic variation and cellular environment in skeletal muscle gene expression. Plos One. 13: e0195788. PMID 29659628 DOI: 10.1371/Journal.Pone.0195788  0.366
2018 Bastarache L, Hughey JJ, Hebbring S, Marlo J, Zhao W, Ho WT, Van Driest SL, McGregor TL, Mosley JD, Wells QS, Temple M, Ramirez AH, Carroll R, Osterman T, Edwards T, et al. Phenotype risk scores identify patients with unrecognized Mendelian disease patterns. Science (New York, N.Y.). 359: 1233-1239. PMID 29590070 DOI: 10.1126/Science.Aal4043  0.736
2017 Dumitrescu L, Ritchie MD, Denny JC, El Rouby NM, McDonough CW, Bradford Y, Ramirez AH, Bielinski SJ, Basford MA, Chai HS, Peissig P, Carrell D, Pathak J, Rasmussen LV, Wang X, et al. Genome-wide study of resistant hypertension identified from electronic health records. Plos One. 12: e0171745. PMID 28222112 DOI: 10.1371/Journal.Pone.0171745  0.551
2016 Iwuchukwu OF, Ramirez AH, Shi Y, Bowton EA, Kawai VK, Schildcrout JS, Roden DM, Denny JC, Stein CM. Genetic determinants of variability in warfarin response after the dose-titration phase. Pharmacogenetics and Genomics. PMID 27632229 DOI: 10.1097/Fpc.0000000000000244  0.49
2015 Williams VS, Cresswell CJ, Ruspi G, Yang T, Atak TC, McLoughlin M, Ingram CD, Ramirez AH, Roden D, Armstrong M. Multiplex ligation-dependent probe amplification copy number variant analysis in patients with acquired long QT syndrome. Europace : European Pacing, Arrhythmias, and Cardiac Electrophysiology : Journal of the Working Groups On Cardiac Pacing, Arrhythmias, and Cardiac Cellular Electrophysiology of the European Society of Cardiology. 17: 635-41. PMID 25564553 DOI: 10.1093/Europace/Euu288  0.354
2014 Ritchie MD, Verma SS, Hall MA, Goodloe RJ, Berg RL, Carrell DS, Carlson CS, Chen L, Crosslin DR, Denny JC, Jarvik G, Li R, Linneman JG, Pathak J, Peissig P, ... ... Ramirez AH, et al. Electronic medical records and genomics (eMERGE) network exploration in cataract: several new potential susceptibility loci. Molecular Vision. 20: 1281-95. PMID 25352737  0.459
2014 Weeke P, Mosley JD, Hanna D, Delaney JT, Shaffer C, Wells QS, Van Driest S, Karnes JH, Ingram C, Guo Y, Shyr Y, Norris K, Kannankeril PJ, Ramirez AH, Smith JD, et al. Exome sequencing implicates an increased burden of rare potassium channel variants in the risk of drug-induced long QT interval syndrome. Journal of the American College of Cardiology. 63: 1430-7. PMID 24561134 DOI: 10.1016/J.Jacc.2014.01.031  0.321
2013 Denny JC, Bastarache L, Ritchie MD, Carroll RJ, Zink R, Mosley JD, Field JR, Pulley JM, Ramirez AH, Bowton E, Basford MA, Carrell DS, Peissig PL, Kho AN, Pacheco JA, et al. Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data. Nature Biotechnology. 31: 1102-10. PMID 24270849 DOI: 10.1038/Nbt.2749  0.677
2013 Wells QS, Becker JR, Su YR, Mosley JD, Weeke P, D'Aoust L, Ausborn NL, Ramirez AH, Pfotenhauer JP, Naftilan AJ, Markham L, Exil V, Roden DM, Hong CC. Whole exome sequencing identifies a causal RBM20 mutation in a large pedigree with familial dilated cardiomyopathy. Circulation. Cardiovascular Genetics. 6: 317-26. PMID 23861363 DOI: 10.1161/CIRCGENETICS.113.000011  0.329
2013 Jeff JM, Ritchie MD, Denny JC, Kho AN, Ramirez AH, Crosslin D, Armstrong L, Basford MA, Wolf WA, Pacheco JA, Chisholm RL, Roden DM, Hayes MG, Crawford DC. Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans. Annals of Human Genetics. 77: 321-32. PMID 23534349 DOI: 10.1111/Ahg.12023  0.565
2013 Ritchie MD, Denny JC, Zuvich RL, Crawford DC, Schildcrout JS, Bastarache L, Ramirez AH, Mosley JD, Pulley JM, Basford MA, Bradford Y, Rasmussen LV, Pathak J, Chute CG, Kullo IJ, et al. Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk. Circulation. 127: 1377-85. PMID 23463857 DOI: 10.1161/Circulationaha.112.000604  0.499
2012 Ramirez AH, Shi Y, Schildcrout JS, Delaney JT, Xu H, Oetjens MT, Zuvich RL, Basford MA, Bowton E, Jiang M, Speltz P, Zink R, Cowan J, Pulley JM, Ritchie MD, et al. Predicting warfarin dosage in European-Americans and African-Americans using DNA samples linked to an electronic health record. Pharmacogenomics. 13: 407-18. PMID 22329724 DOI: 10.2217/Pgs.11.164  0.591
2011 Denny JC, Crawford DC, Ritchie MD, Bielinski SJ, Basford MA, Bradford Y, Chai HS, Bastarache L, Zuvich R, Peissig P, Carrell D, Ramirez AH, Pathak J, Wilke RA, Rasmussen L, et al. Variants near FOXE1 are associated with hypothyroidism and other thyroid conditions: using electronic medical records for genome- and phenome-wide studies. American Journal of Human Genetics. 89: 529-42. PMID 21981779 DOI: 10.1016/J.Ajhg.2011.09.008  0.577
2011 Xu H, Jiang M, Oetjens M, Bowton EA, Ramirez AH, Jeff JM, Basford MA, Pulley JM, Cowan JD, Wang X, Ritchie MD, Masys DR, Roden DM, Crawford DC, Denny JC. Facilitating pharmacogenetic studies using electronic health records and natural-language processing: a case study of warfarin. Journal of the American Medical Informatics Association : Jamia. 18: 387-91. PMID 21672908 DOI: 10.1136/Amiajnl-2011-000208  0.669
2011 Ramirez AH, Schildcrout JS, Blakemore DL, Masys DR, Pulley JM, Basford MA, Roden DM, Denny JC. Modulators of normal electrocardiographic intervals identified in a large electronic medical record. Heart Rhythm : the Official Journal of the Heart Rhythm Society. 8: 271-7. PMID 21044898 DOI: 10.1016/J.Hrthm.2010.10.034  0.543
2010 Denny JC, Ritchie MD, Crawford DC, Schildcrout JS, Ramirez AH, Pulley JM, Basford MA, Masys DR, Haines JL, Roden DM. Identification of genomic predictors of atrioventricular conduction: using electronic medical records as a tool for genome science. Circulation. 122: 2016-21. PMID 21041692 DOI: 10.1161/Circulationaha.110.948828  0.561
2010 Ritchie MD, Denny JC, Crawford DC, Ramirez AH, Weiner JB, Pulley JM, Basford MA, Brown-Gentry K, Balser JR, Masys DR, Haines JL, Roden DM. Robust replication of genotype-phenotype associations across multiple diseases in an electronic medical record. American Journal of Human Genetics. 86: 560-72. PMID 20362271 DOI: 10.1016/J.Ajhg.2010.03.003  0.621
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