Carolin Kosiol, Ph.D. - Publications

Institute of Population Genetics Vetmeduni Vienna 
Phylogeny, Population Genetics, Experimental Evolution

33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Kosiol C, Anisimova M. Selection Acting on Genomes. Methods in Molecular Biology (Clifton, N.J.). 1910: 373-397. PMID 31278671 DOI: 10.1007/978-1-4939-9074-0_12  0.36
2019 Rogers J, Raveendran M, Harris RA, Mailund T, Leppälä K, Athanasiadis G, Schierup MH, Cheng J, Munch K, Walker JA, Konkel MK, Jordan V, Steely CJ, Beckstrom TO, Bergey C, ... ... Kosiol C, et al. The comparative genomics and complex population history of baboons. Science Advances. 5: eaau6947. PMID 30854422 DOI: 10.1126/sciadv.aau6947  0.52
2017 Bergman J, Schrempf D, Kosiol C, Vogl C. Inference in population genetics using forward and backward, discrete and continuous time processes. Journal of Theoretical Biology. 439: 166-180. PMID 29229523 DOI: 10.1016/j.jtbi.2017.12.008  0.52
2017 Bertl J, Ewing G, Kosiol C, Futschik A. Approximate maximum likelihood estimation for population genetic inference. Statistical Applications in Genetics and Molecular Biology. PMID 29095700 DOI: 10.1515/sagmb-2017-0016  0.32
2016 Jónás A, Taus T, Kosiol C, Schlötterer C, Futschik A. Estimating the Effective Population Size from Temporal Allele Frequency Changes in Experimental Evolution. Genetics. PMID 27542959 DOI: 10.1534/genetics.116.191197  0.32
2016 Schrempf D, Minh BQ, Maio N, Haeseler AV, Kosiol C. Reversible polymorphism-aware phylogenetic models and their application to tree inference. Journal of Theoretical Biology. PMID 27480613 DOI: 10.1016/j.jtbi.2016.07.042  0.52
2015 De Maio N, Schrempf D, Kosiol C. PoMo: An Allele Frequency-Based Approach for Species Tree Estimation. Systematic Biology. 64: 1018-31. PMID 26209413 DOI: 10.1093/sysbio/syv048  1
2015 Topa H, Jónás Á, Kofler R, Kosiol C, Honkela A. Gaussian process test for high-throughput sequencing time series: application to experimental evolution. Bioinformatics (Oxford, England). 31: 1762-70. PMID 25614471 DOI: 10.1093/bioinformatics/btv014  1
2014 . The common marmoset genome provides insight into primate biology and evolution. Nature Genetics. 46: 850-7. PMID 25038751 DOI: 10.1038/ng.3042  1
2014 Marek A, Kaján GL, Kosiol C, Harrach B, Schlötterer C, Hess M. Complete genome sequences of pigeon adenovirus 1 and duck adenovirus 2 extend the number of species within the genus Aviadenovirus. Virology. 462: 107-14. PMID 24971703 DOI: 10.1016/j.virol.2014.04.033  1
2014 Palmieri N, Kosiol C, Schlötterer C. The life cycle of Drosophila orphan genes. Elife. 3: e01311. PMID 24554240 DOI: 10.7554/eLife.01311  1
2014 Marek A, Ballmann MZ, Kosiol C, Harrach B, Schlötterer C, Hess M. Whole-genome sequences of two turkey adenovirus types reveal the existence of two unknown lineages that merit the establishment of novel species within the genus Aviadenovirus. The Journal of General Virology. 95: 156-70. PMID 24077297 DOI: 10.1099/vir.0.057711-0  1
2014 Palmieri N, Kosiol C, Schlötterer C. The life cycle of Drosophila orphan genes Elife. 2014. DOI: 10.7554/eLife.01311.001  1
2013 Ma X, Kelley JL, Eilertson K, Musharoff S, Degenhardt JD, Martins AL, Vinar T, Kosiol C, Siepel A, Gutenkunst RN, Bustamante CD. Population genomic analysis reveals a rich speciation and demographic history of orang-utans (Pongo pygmaeus and Pongo abelii). Plos One. 8: e77175. PMID 24194868 DOI: 10.1371/journal.pone.0077175  1
2013 De Maio N, Schlötterer C, Kosiol C. Linking great apes genome evolution across time scales using polymorphism-aware phylogenetic models. Molecular Biology and Evolution. 30: 2249-62. PMID 23906727 DOI: 10.1093/molbev/mst131  1
2013 Marek A, Kosiol C, Harrach B, Kaján GL, Schlötterer C, Hess M. The first whole genome sequence of a Fowl adenovirus B strain enables interspecies comparisons within the genus Aviadenovirus. Veterinary Microbiology. 166: 250-6. PMID 23830773 DOI: 10.1016/j.vetmic.2013.05.017  1
2013 De Maio N, Holmes I, Schlötterer C, Kosiol C. Estimating empirical codon hidden Markov models. Molecular Biology and Evolution. 30: 725-36. PMID 23188590 DOI: 10.1093/molbev/mss266  1
2012 Palmieri N, Nolte V, Suvorov A, Kosiol C, Schlötterer C. Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura. Plos One. 7: e46415. PMID 23056304 DOI: 10.1371/journal.pone.0046415  1
2012 Kosiol C, Anisimova M. Selection on the protein-coding genome Methods in Molecular Biology. 856: 113-140. PMID 22399457 DOI: 10.1007/978-1-61779-585-5_5  1
2011 Kosiol C, Goldman N. Markovian and non-Markovian protein sequence evolution: aggregated Markov process models. Journal of Molecular Biology. 411: 910-23. PMID 21718704 DOI: 10.1016/j.jmb.2011.06.005  1
2011 Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, ... ... Kosiol C, et al. Comparative and demographic analysis of orang-utan genomes. Nature. 469: 529-33. PMID 21270892 DOI: 10.1038/nature09687  1
2011 Kofler R, Orozco-terWengel P, De Maio N, Pandey RV, Nolte V, Futschik A, Kosiol C, Schlötterer C. PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals. Plos One. 6: e15925. PMID 21253599 DOI: 10.1371/journal.pone.0015925  1
2010 Janssen R, Le Gouar M, Pechmann M, Poulin F, Bolognesi R, Schwager EE, Hopfen C, Colbourne JK, Budd GE, Brown SJ, Prpic NM, Kosiol C, Vervoort M, Damen WG, Balavoine G, et al. Conservation, loss, and redeployment of Wnt ligands in protostomes: implications for understanding the evolution of segment formation. Bmc Evolutionary Biology. 10: 374. PMID 21122121 DOI: 10.1186/1471-2148-10-374  1
2010 da Fonseca RR, Kosiol C, Vinar T, Siepel A, Nielsen R. Positive selection on apoptosis related genes. Febs Letters. 584: 469-76. PMID 20026333 DOI: 10.1016/j.febslet.2009.12.022  1
2009 Anisimova M, Kosiol C. Investigating protein-coding sequence evolution with probabilistic codon substitution models Molecular Biology and Evolution. 26: 255-271. PMID 18922761 DOI: 10.1093/molbev/msn232  1
2008 Kosiol C, Vinař T, Da Fonseca RR, Hubisz MJ, Bustamante CD, Nielsen R, Siepel A. Patterns of positive selection in six mammalian genomes Plos Genetics. 4. PMID 18670650 DOI: 10.1371/journal.pgen.1000144  1
2008 Blekhman R, Man O, Herrmann L, Boyko AR, Indap A, Kosiol C, Bustamante CD, Teshima KM, Przeworski M. Natural selection on genes that underlie human disease susceptibility. Current Biology : Cb. 18: 883-9. PMID 18571414 DOI: 10.1016/j.cub.2008.04.074  1
2007 Kosiol C, Holmes I, Goldman N. An empirical codon model for protein sequence evolution. Molecular Biology and Evolution. 24: 1464-79. PMID 17400572 DOI: 10.1093/molbev/msm064  1
2006 Klosterman PS, Uzilov AV, Bendaña YR, Bradley RK, Chao S, Kosiol C, Goldman N, Holmes I. XRate: a fast prototyping, training and annotation tool for phylo-grammars. Bmc Bioinformatics. 7: 428. PMID 17018148 DOI: 10.1186/1471-2105-7-428  1
2006 Kosiol C, Bofkin L, Whelan S. Phylogenetics by likelihood: Evolutionary modeling as a tool for understanding the genome Journal of Biomedical Informatics. 39: 51-61. PMID 16226061 DOI: 10.1016/j.jbi.2005.08.003  1
2005 Kosiol C, Goldman N. Different versions of the Dayhoff rate matrix. Molecular Biology and Evolution. 22: 193-9. PMID 15483331 DOI: 10.1093/molbev/msi005  1
2004 Kosiol C, Goldman N, Buttimore NH. A new criterion and method for amino acid classification. Journal of Theoretical Biology. 228: 97-106. PMID 15064085 DOI: 10.1016/j.jtbi.2003.12.010  1
2003 McCarthy LG, Kosiol C, Healy AM, Bradley G, Sexton JC, Corrigan OI. Simulating the hydrodynamic conditions in the United States pharmacopeia paddle dissolution apparatus Aaps Pharmscitech. 4. PMID 12916904  1
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