Nives Škunca, Ph.D. - Publications

Affiliations: 
ETH/Uni Zurich, Zürich, Zürich, Switzerland 

19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Gaudet P, Škunca N, Hu JC, Dessimoz C. Primer on the Gene Ontology. Methods in Molecular Biology (Clifton, N.J.). 1446: 25-37. PMID 27812933 DOI: 10.1007/978-1-4939-3743-1_3  0.6
2015 Ravenhall M, Škunca N, Lassalle F, Dessimoz C. Inferring horizontal gene transfer. Plos Computational Biology. 11: e1004095. PMID 26020646 DOI: 10.1371/journal.pcbi.1004095  0.6
2015 Bastian FB, Chibucos MC, Gaudet P, Giglio M, Holliday GL, Huang H, Lewis SE, Niknejad A, Orchard S, Poux S, Skunca N, Robinson-Rechavi M. The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations. Database : the Journal of Biological Databases and Curation. 2015: bav043. PMID 25957950 DOI: 10.1093/database/bav043  0.6
2015 Egger B, Lapraz F, Tomiczek B, Müller S, Dessimoz C, Girstmair J, Škunca N, Rawlinson KA, Cameron CB, Beli E, Todaro MA, Gammoudi M, Noreña C, Telford MJ. A transcriptomic-phylogenomic analysis of the evolutionary relationships of flatworms. Current Biology : Cb. 25: 1347-53. PMID 25866392 DOI: 10.1016/j.cub.2015.03.034  0.6
2015 Škunca N, Dessimoz C. Phylogenetic profiling: how much input data is enough? Plos One. 10: e0114701. PMID 25679783 DOI: 10.1371/journal.pone.0114701  0.6
2015 Altenhoff AM, Škunca N, Glover N, Train CM, Sueki A, Piližota I, Gori K, Tomiczek B, Müller S, Redestig H, Gonnet GH, Dessimoz C. The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements. Nucleic Acids Research. 43: D240-9. PMID 25399418 DOI: 10.1093/nar/gku1158  1
2015 Škunca N, Dessimoz C. Phylogenetic profiling: How much input data is enough? Plos One. 10. DOI: 10.1371/journal.pone.0114701  0.6
2015 Ravenhall M, Škunca N, Lassalle F, Dessimoz C. Inferring Horizontal Gene Transfer Plos Computational Biology. 11. DOI: 10.1371/journal.pcbi.1004095  0.6
2014 Peng X, Alföldi J, Gori K, Eisfeld AJ, Tyler SR, Tisoncik-Go J, Brawand D, Law GL, Skunca N, Hatta M, Gasper DJ, Kelly SM, Chang J, Thomas MJ, Johnson J, et al. The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease. Nature Biotechnology. 32: 1250-5. PMID 25402615 DOI: 10.1038/nbt.3079  0.6
2013 Dessimoz C, Škunca N, Thomas PD. CAFA and the Open World of protein function predictions Trends in Genetics. 29: 609-610. PMID 24138813 DOI: 10.1016/j.tig.2013.09.005  0.6
2013 Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, Pandey G, Yunes JM, Talwalkar AS, Repo S, Souza ML, ... ... Škunca N, et al. A large-scale evaluation of computational protein function prediction. Nature Methods. 10: 221-7. PMID 23353650 DOI: 10.1038/nmeth.2340  0.6
2013 Škunca N, Bošnjak M, Kriško A, Panov P, Džeroski S, Šmuc T, Supek F. Phyletic Profiling with Cliques of Orthologs Is Enhanced by Signatures of Paralogy Relationships Plos Computational Biology. 9. PMID 23308060 DOI: 10.1371/journal.pcbi.1002852  0.6
2012 Škunca N, Altenhoff A, Dessimoz C. Quality of computationally inferred gene ontology annotations Plos Computational Biology. 8. PMID 22693439 DOI: 10.1371/journal.pcbi.1002533  0.6
2012 Dessimoz C, Gabaldón T, Roos DS, Sonnhammer EL, Herrero J. Toward community standards in the quest for orthologs. Bioinformatics (Oxford, England). 28: 900-4. PMID 22332236 DOI: 10.1093/bioinformatics/bts050  0.6
2011 du Plessis L, Škunca N, Dessimoz C. The what, where, how and why of gene ontology-A primer for bioinformaticians Briefings in Bioinformatics. 12: 723-735. PMID 21330331 DOI: 10.1093/bib/bbr002  0.6
2011 Supek F, Bošnjak M, Škunca N, Šmuc T. Revigo summarizes and visualizes long lists of gene ontology terms Plos One. 6. DOI: 10.1371/journal.pone.0021800  0.6
2010 Supek F, Škunca N, Repar J, Vlahoviček K, Šmuc T. Translational selection is ubiquitous in prokaryotes Plos Genetics. 6: 1-13. DOI: 10.1371/journal.pgen.1001004  0.6
2008 Hranueli D, Starčević A, Žučko J, Diminić J, Škunca N, Željeznak V, Kovaček D, Pavlinušić D, Šimunković J, Long PF, Cullum J. In silico design of 'un-natural' natural products | Oblikovanje novih prirodnih spojeva u uvjetima in silico Kemija U Industriji/Journal of Chemists and Chemical Engineers. 57: 245-256.  0.6
2007 Zucko J, Skunca N, Curk T, Zupan B, Long PF, Cullum J, Kessin RH, Hranueli D. Polyketide synthase genes and the natural products potential of Dictyostelium discoideum. Bioinformatics (Oxford, England). 23: 2543-9. PMID 17660200 DOI: 10.1093/bioinformatics/btm381  0.6
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