| Year |
Citation |
Score |
| 2023 |
Heinken A, Hertel J, Acharya G, Ravcheev DA, Nyga M, Okpala OE, Hogan M, Magnúsdóttir S, Martinelli F, Nap B, Preciat G, Edirisinghe JN, Henry CS, Fleming RMT, Thiele I. Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine. Nature Biotechnology. PMID 36658342 DOI: 10.1038/s41587-022-01628-0 |
0.393 |
|
| 2019 |
Ravcheev DA, Moussu L, Smajic S, Thiele I. Comparative Genomic Analysis Reveals Novel Microcompartment-Associated Metabolic Pathways in the Human Gut Microbiome. Frontiers in Genetics. 10: 636. PMID 31333721 DOI: 10.3389/Fgene.2019.00636 |
0.507 |
|
| 2019 |
Heinken A, Ravcheev DA, Baldini F, Heirendt L, Fleming RMT, Thiele I. Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease. Microbiome. 7: 75. PMID 31092280 DOI: 10.1186/S40168-019-0689-3 |
0.4 |
|
| 2018 |
Noronha A, Modamio J, Jarosz Y, Guerard E, Sompairac N, Preciat G, Daníelsdóttir AD, Krecke M, Merten D, Haraldsdóttir HS, Heinken A, Heirendt L, Magnúsdóttir S, Ravcheev DA, Sahoo S, et al. The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease. Nucleic Acids Research. PMID 30371894 DOI: 10.1093/Nar/Gky992 |
0.439 |
|
| 2017 |
Ravcheev DA, Thiele I. Comparative Genomic Analysis of the Human Gut Microbiome Reveals a Broad Distribution of Metabolic Pathways for the Degradation of Host-Synthetized Mucin Glycans and Utilization of Mucin-Derived Monosaccharides. Frontiers in Genetics. 8: 111. PMID 28912798 DOI: 10.3389/Fgene.2017.00111 |
0.475 |
|
| 2016 |
Leyn SA, Suvorova IA, Kazakov AE, Ravcheev DA, Stepanova VV, Novichkov PS, Rodionov DA. Comparative genomics and evolution of transcriptional regulons in . Microbial Genomics. 2: e000061. PMID 28348857 DOI: 10.1099/mgen.0.000061 |
0.433 |
|
| 2016 |
Magnúsdóttir S, Heinken A, Kutt L, Ravcheev DA, Bauer E, Noronha A, Greenhalgh K, Jäger C, Baginska J, Wilmes P, Fleming RM, Thiele I. Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota. Nature Biotechnology. PMID 27893703 DOI: 10.1038/Nbt.3703 |
0.443 |
|
| 2016 |
Ravcheev DA, Thiele I. Genomic Analysis of the Human Gut Microbiome Suggests Novel Enzymes Involved in Quinone Biosynthesis. Frontiers in Microbiology. 7: 128. PMID 26904004 DOI: 10.3389/Fmicb.2016.00128 |
0.458 |
|
| 2015 |
Zhang H, Ravcheev DA, Hu D, Zhang F, Gong X, Hao L, Cao M, Rodionov DA, Wang C, Feng Y. Two novel regulators of N-acetyl-galactosamine utilization pathway and distinct roles in bacterial infections. Microbiologyopen. PMID 26540018 DOI: 10.1002/mbo3.307 |
0.308 |
|
| 2015 |
Magnúsdóttir S, Ravcheev D, de Crécy-Lagard V, Thiele I. Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes. Frontiers in Genetics. 6: 148. PMID 25941533 DOI: 10.3389/Fgene.2015.00148 |
0.377 |
|
| 2014 |
Ravcheev DA, Thiele I. Systematic genomic analysis reveals the complementary aerobic and anaerobic respiration capacities of the human gut microbiota. Frontiers in Microbiology. 5: 674. PMID 25538694 DOI: 10.3389/Fmicb.2014.00674 |
0.496 |
|
| 2014 |
Ravcheev DA, Khoroshkin MS, Laikova ON, Tsoy OV, Sernova NV, Petrova SA, Rakhmaninova AB, Novichkov PS, Gelfand MS, Rodionov DA. Comparative genomics and evolution of regulons of the LacI-family transcription factors. Frontiers in Microbiology. 5: 294. PMID 24966856 DOI: 10.3389/fmicb.2014.00294 |
0.403 |
|
| 2014 |
Ravcheev D, Thiele I. Genomics analysis of the respiratory capacities of the human intestinal microbiota F1000research. 5. DOI: 10.7490/F1000Research.1096811.1 |
0.391 |
|
| 2013 |
Ravcheev DA, Godzik A, Osterman AL, Rodionov DA. Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks. Bmc Genomics. 14: 873. PMID 24330590 DOI: 10.1186/1471-2164-14-873 |
0.505 |
|
| 2013 |
Novichkov PS, Kazakov AE, Ravcheev DA, Leyn SA, Kovaleva GY, Sutormin RA, Kazanov MD, Riehl W, Arkin AP, Dubchak I, Rodionov DA. RegPrecise 3.0--a resource for genome-scale exploration of transcriptional regulation in bacteria. Bmc Genomics. 14: 745. PMID 24175918 DOI: 10.1186/1471-2164-14-745 |
0.418 |
|
| 2013 |
Ravcheev DA, Best AA, Sernova NV, Kazanov MD, Novichkov PS, Rodionov DA. Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria Bmc Genomics. 14. PMID 23398941 DOI: 10.1186/1471-2164-14-94 |
0.396 |
|
| 2012 |
Ravcheev DA, Li X, Latif H, Zengler K, Leyn SA, Korostelev YD, Kazakov AE, Novichkov PS, Osterman AL, Rodionov DA. Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex. Journal of Bacteriology. 194: 1145-57. PMID 22210771 DOI: 10.1128/Jb.06412-11 |
0.313 |
|
| 2011 |
Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, et al. Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus. Bmc Genomics. 12: S3. PMID 21810205 DOI: 10.1186/1471-2164-12-S1-S3 |
0.415 |
|
| 2011 |
Suvorova IA, Tutukina MN, Ravcheev DA, Rodionov DA, Ozoline ON, Gelfand MS. Comparative genomic analysis of the hexuronate metabolism genes and their regulation in gammaproteobacteria. Journal of Bacteriology. 193: 3956-63. PMID 21622752 DOI: 10.1128/JB.00277-11 |
0.444 |
|
| 2011 |
Ravcheev DA, Best AA, Tintle N, DeJongh M, Osterman AL, Novichkov PS, Rodionov DA. Inference of the transcriptional regulatory network in Staphylococcus aureus by integration of experimental and genomics-based evidence Journal of Bacteriology. 193: 3228-3240. PMID 21531804 DOI: 10.1128/Jb.00350-11 |
0.356 |
|
| 2009 |
Tsoy O, Ravcheev D, Mushegian A. Comparative genomics of ethanolamine utilization. Journal of Bacteriology. 191: 7157-64. PMID 19783625 DOI: 10.1128/Jb.00838-09 |
0.34 |
|
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