| Year |
Citation |
Score |
| 2020 |
Urban L, Remmele CW, Dittrich M, Schwarz RF, Müller T. covRNA: discovering covariate associations in large-scale gene expression data. Bmc Research Notes. 13: 92. PMID 32093752 DOI: 10.1186/S13104-020-04946-1 |
0.495 |
|
| 2020 |
Calabrese C, Davidson NR, Demircioğlu D, Fonseca NA, He Y, Kahles A, Lehmann KV, Liu F, Shiraishi Y, Soulette CM, Urban L, Greger L, Li S, Liu D, ... ... Schwarz RF, et al. Genomic basis for RNA alterations in cancer. Nature. 578: 129-136. PMID 32025019 DOI: 10.1038/S41586-020-1970-0 |
0.439 |
|
| 2017 |
Watkins TBK, Schwarz RF. Phylogenetic Quantification of Intratumor Heterogeneity. Cold Spring Harbor Perspectives in Medicine. PMID 28710259 DOI: 10.1101/Cshperspect.A028316 |
0.412 |
|
| 2017 |
Jamal-Hanjani M, Wilson GA, McGranahan N, Birkbak NJ, Watkins TBK, Veeriah S, Shafi S, Johnson DH, Mitter R, Rosenthal R, Salm M, Horswell S, Escudero M, Matthews N, Rowan A, ... ... Schwarz RF, et al. Tracking the Evolution of Non-Small-Cell Lung Cancer. The New England Journal of Medicine. PMID 28445112 DOI: 10.1056/Nejmoa1616288 |
0.372 |
|
| 2017 |
Amin S, Awadalla P, Biankin A, Boutros P, Brazma A, Brooks AN, Calabrese C, Chang D, Chateigner A, Chen K, Chong Z, Craft B, Creighton C, Demircioğlu D, Fonseca N, ... ... Schwarz R, et al. Abstract SY10-02: Pan-cancer study of recurrent and heterogeneous RNA aberrations and association with whole-genome variants Cancer Research. 77. DOI: 10.1158/1538-7445.Am2017-Sy10-02 |
0.329 |
|
| 2017 |
Davidson NR, Brazma A, Brooks AN, Calabrese C, Fonseca NA, Goke J, He Y, Hu X, Kahles A, Lehmann K, Liu F, Rätsch G, Li S, Schwarz RF, Yang M, et al. Abstract 389: Integrating diverse transcriptomic alterations to identify cancer-relevant genes Cancer Research. 77: 389-389. DOI: 10.1158/1538-7445.Am2017-389 |
0.425 |
|
| 2016 |
Alam MT, Zelezniak A, Mülleder M, Shliaha P, Schwarz R, Capuano F, Vowinckel J, Radmaneshfar E, Krüger A, Calvani E, Michel S, Börno S, Christen S, Patil KR, Timmermann B, et al. The metabolic background is a global player in Saccharomyces gene expression epistasis. Nature Microbiology. 1: 15030. PMID 27572163 DOI: 10.1038/Nmicrobiol.2015.30 |
0.343 |
|
| 2016 |
Schwarz RF, Tamuri AU, Kultys M, King J, Godwin J, Florescu AM, Schultz J, Goldman N. ALVIS: interactive non-aggregative visualization and explorative analysis of multiple sequence alignments. Nucleic Acids Research. PMID 26819408 DOI: 10.1093/Nar/Gkw022 |
0.539 |
|
| 2015 |
Schwarz RF, Ng CK, Cooke SL, Newman S, Temple J, Piskorz AM, Gale D, Sayal K, Murtaza M, Baldwin PJ, Rosenfeld N, Earl HM, Sala E, Jimenez-Linan M, Parkinson CA, et al. Spatial and temporal heterogeneity in high-grade serous ovarian cancer: a phylogenetic analysis. Plos Medicine. 12: e1001789. PMID 25710373 DOI: 10.1371/Journal.Pmed.1001789 |
0.302 |
|
| 2015 |
Beerenwinkel N, Schwarz RF, Gerstung M, Markowetz F. Cancer evolution: mathematical models and computational inference. Systematic Biology. 64: e1-25. PMID 25293804 DOI: 10.1093/Sysbio/Syu081 |
0.305 |
|
| 2015 |
Urban L, Remmele CW, Schwarz RF, Liò P, Dittrich M, Müller T. Discovering relationships between patient phenotypes and gene functions in large-scale transcriptomic data F1000research. 4. DOI: 10.7490/F1000Research.1110252.1 |
0.315 |
|
| 2014 |
Kultys M, Nicholas L, Schwarz R, Goldman N, King J. Sequence Bundles: a novel method for visualising, discovering and exploring sequence motifs. Bmc Proceedings. 8: S8. PMID 25237395 DOI: 10.1186/1753-6561-8-S2-S8 |
0.554 |
|
| 2014 |
Schwarz RF, Trinh A, Sipos B, Brenton JD, Goldman N, Markowetz F. Phylogenetic quantification of intra-tumour heterogeneity. Plos Computational Biology. 10: e1003535. PMID 24743184 DOI: 10.1371/Journal.Pcbi.1003535 |
0.633 |
|
| 2012 |
Yuan Y, Failmezger H, Rueda OM, Ali HR, Gräf S, Chin SF, Schwarz RF, Curtis C, Dunning MJ, Bardwell H, Johnson N, Doyle S, Turashvili G, Provenzano E, Aparicio S, et al. Quantitative image analysis of cellular heterogeneity in breast tumors complements genomic profiling. Science Translational Medicine. 4: 157ra143. PMID 23100629 DOI: 10.1126/Scitranslmed.3004330 |
0.346 |
|
| 2012 |
Mulder KW, Wang X, Escriu C, Ito Y, Schwarz RF, Gillis J, Sirokmány G, Donati G, Uribe-Lewis S, Pavlidis P, Murrell A, Markowetz F, Watt FM. Diverse epigenetic strategies interact to control epidermal differentiation. Nature Cell Biology. 14: 753-63. PMID 22729083 DOI: 10.1038/Ncb2520 |
0.31 |
|
| 2011 |
Joseph B, Schwarz RF, Linke B, Blom J, Becker A, Claus H, Goesmann A, Frosch M, Müller T, Vogel U, Schoen C. Virulence evolution of the human pathogen Neisseria meningitidis by recombination in the core and accessory genome. Plos One. 6: e18441. PMID 21541312 DOI: 10.1371/Journal.Pone.0018441 |
0.552 |
|
| 2010 |
Schwarz RF, Fletcher W, Förster F, Merget B, Wolf M, Schultz J, Markowetz F. Evolutionary distances in the twilight zone--a rational kernel approach. Plos One. 5: e15788. PMID 21209825 DOI: 10.1371/Journal.Pone.0015788 |
0.399 |
|
| 2010 |
Joseph B, Schneiker-Bekel S, Schramm-Glück A, Blom J, Claus H, Linke B, Schwarz RF, Becker A, Goesmann A, Frosch M, Schoen C. Comparative genome biology of a serogroup B carriage and disease strain supports a polygenic nature of meningococcal virulence Journal of Bacteriology. 192: 5363-5377. PMID 20709895 DOI: 10.1128/Jb.00883-10 |
0.367 |
|
| 2010 |
Schwarz R, Joseph B, Gerlach G, Schramm-Glück A, Engelhard K, Frosch M, Müller T, Schoen C. Evaluation of one- and two-color gene expression arrays for microbial comparative genome hybridization analyses in routine applications Journal of Clinical Microbiology. 48: 3105-3110. PMID 20592156 DOI: 10.1128/Jcm.00233-10 |
0.513 |
|
| 2010 |
Koetschan C, Förster F, Keller A, Schleicher T, Ruderisch B, Schwarz R, Müller T, Wolf M, Schultz J. The ITS2 Database III--sequences and structures for phylogeny. Nucleic Acids Research. 38: D275-9. PMID 19920122 DOI: 10.1093/Nar/Gkp966 |
0.513 |
|
| 2009 |
Schwarz R, Seibel PN, Rahmann S, Schoen C, Huenerberg M, Müller-Reible C, Dandekar T, Karchin R, Schultz J, Müller T. Detecting species-site dependencies in large multiple sequence alignments. Nucleic Acids Research. 37: 5959-68. PMID 19661281 DOI: 10.1093/Nar/Gkp634 |
0.518 |
|
| 2009 |
Schwarz R, Wolf M, Müller T. A probabilistic model of cell size reduction in Pseudo-nitzschia delicatissima (Bacillariophyta). Journal of Theoretical Biology. 258: 316-22. PMID 19232359 DOI: 10.1016/J.Jtbi.2009.02.002 |
0.415 |
|
| 2008 |
Engelmann JC, Schwarz R, Blenk S, Friedrich T, Seibel PN, Dandekar T, Müller T. Unsupervised meta-analysis on diverse gene expression datasets allows insight into gene function and regulation. Bioinformatics and Biology Insights. 2: 265-80. PMID 19812781 DOI: 10.4137/Bbi.S665 |
0.509 |
|
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