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Debashis Barik - Publications

Affiliations: 
2013- University of Hyderabad, Hyderabad, Telangana, India 
Area:
Chemical species in biochemical reaction networks, computational chemistry, physical chemistry, chemical dynamics
Website:
http://chemistry.uohyd.ac.in/~dbk/index.html
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Barik D, Das S. Protocol for potential energy-based bifurcation analysis, parameter searching, and phase diagram analysis of noncanonical bistable switches. Star Protocols. 4: 102665. PMID 37889760 DOI: 10.1016/j.xpro.2023.102665  0.481
2023 Das S, Barik D. Origin, heterogeneity, and interconversion of noncanonical bistable switches from the positive feedback loops under dual signaling. Iscience. 26: 106379. PMID 37034993 DOI: 10.1016/j.isci.2023.106379  0.509
2022 Das S, Barik D. Pulsatile signaling of bistable switches reveal the distinct nature of pulse processing by mutual activation and mutual inhibition loop. Journal of Theoretical Biology. 540: 111075. PMID 35231494 DOI: 10.1016/j.jtbi.2022.111075  0.502
2021 Dey A, Barik D. Emergent Bistable Switches from the Incoherent Feed-Forward Signaling of a Positive Feedback Loop. Acs Synthetic Biology. 10: 3117-3128. PMID 34694110 DOI: 10.1021/acssynbio.1c00373  0.692
2021 Das S, Barik D. Scaling of intrinsic noise in an autocratic reaction network. Physical Review. E. 103: 042403. PMID 34006004 DOI: 10.1103/PhysRevE.103.042403  0.512
2021 Dey A, Barik D. Potential Landscapes, Bifurcations, and Robustness of Tristable Networks. Acs Synthetic Biology. PMID 33533596 DOI: 10.1021/acssynbio.0c00570  0.706
2020 Das S, Barik D. Qualitative and quantitative nature of mutual interactions dictate chemical noise in a democratic reaction network. Physical Review. E. 101: 042407. PMID 32422814 DOI: 10.1103/Physreve.101.042407  0.562
2019 Das S, Barik D. Investigation of chemical noise in multisite phosphorylation chain using linear noise approximation. Physical Review. E. 100: 052402. PMID 31870028 DOI: 10.1103/Physreve.100.052402  0.557
2019 Dey A, Barik D. Dichotomous nature of bistability generated by negative cooperativity in receptor-ligand binding. Acs Synthetic Biology. PMID 31132851 DOI: 10.1021/Acssynbio.8B00517  0.693
2017 Dey A, Barik D. Parallel arrangements of positive feedback loops limit cell-to-cell variability in differentiation. Plos One. 12: e0188623. PMID 29186174 DOI: 10.1371/Journal.Pone.0188623  0.722
2017 Chakravarty S, Barik D. Steady state statistical correlations predict bistability in reaction motifs. Molecular Biosystems. PMID 28246663 DOI: 10.1039/C7Mb00052A  0.374
2016 Barik D, Ball DA, Peccoud J, Tyson JJ. A Stochastic Model of the Yeast Cell Cycle Reveals Roles for Feedback Regulation in Limiting Cellular Variability. Plos Computational Biology. 12: e1005230. PMID 27935947 DOI: 10.1371/Journal.Pcbi.1005230  0.541
2015 Das M, Das D, Barik D, Ray DS. Landauer's blowtorch effect as a thermodynamic cross process: Brownian cooling. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 92: 052102. PMID 26651642 DOI: 10.1103/Physreve.92.052102  0.73
2014 Tkach KE, Barik D, Voisinne G, Malandro N, Hathorn MM, Cotari JW, Vogel R, Merghoub T, Wolchok J, Krichevsky O, Altan-Bonnet G. T cells translate individual, quantal activation into collective, analog cytokine responses via time-integrated feedbacks. Elife. 3: e01944. PMID 24719192 DOI: 10.7554/Elife.01944  0.664
2014 Tkach KE, Barik D, Voisinne G, Malandro N, Hathorn MM, Cotari JW, Vogel R, Merghoub T, Wolchok J, Krichevsky O, Altan-Bonnet G. Author response: T cells translate individual, quantal activation into collective, analog cytokine responses via time-integrated feedbacks Elife. DOI: 10.7554/Elife.01944.018  0.664
2013 Ball DA, Adames NR, Reischmann N, Barik D, Franck CT, Tyson JJ, Peccoud J. Measurement and modeling of transcriptional noise in the cell cycle regulatory network. Cell Cycle (Georgetown, Tex.). 12: 3203-18. PMID 24013422 DOI: 10.4161/Cc.26257  0.535
2010 Barik D, Baumann WT, Paul MR, Novak B, Tyson JJ. A model of yeast cell-cycle regulation based on multisite phosphorylation. Molecular Systems Biology. 6: 405. PMID 20739927 DOI: 10.1038/Msb.2010.55  0.552
2009 Kapuy O, Barik D, Sananes MR, Tyson JJ, Novák B. Bistability by multiple phosphorylation of regulatory proteins. Progress in Biophysics and Molecular Biology. 100: 47-56. PMID 19523976 DOI: 10.1016/J.Pbiomolbio.2009.06.004  0.471
2009 MAJEE P, GOSWAMI G, BARIK D, BAG BC. A UNIFIED DESCRIPTION OF TIME DEPENDENCE OF INFORMATION ENTROPY PRODUCTION AND FLUX IN THERMAL BROADBAND NOISE-DRIVEN DYNAMICAL SYSTEMS International Journal of Modern Physics B. 23: 3789-3802. DOI: 10.1142/S0217979209052704  0.339
2008 Barik D, Paul MR, Baumann WT, Cao Y, Tyson JJ. Stochastic simulation of enzyme-catalyzed reactions with disparate timescales. Biophysical Journal. 95: 3563-74. PMID 18621809 DOI: 10.1529/Biophysj.108.129155  0.512
2008 Chaudhuri JR, Barik D. State-dependent diffusion in a periodic potential for a nonequilibrium open system European Physical Journal B. 63: 117-126. DOI: 10.1140/Epjb/E2008-00211-1  0.337
2007 Chaudhuri JR, Barik D, Banik SK. Directed motion generated by heat bath nonlinearly driven by external noise Journal of Physics a: Mathematical and Theoretical. 40: 14715-14723. DOI: 10.1088/1751-8113/40/49/007  0.325
2006 Chaudhuri JR, Barik D, Banik SK. Dynamics of a metastable state nonlinearly coupled to a heat bath driven by external noise. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 74: 061119. PMID 17280050 DOI: 10.1103/Physreve.74.061119  0.347
2006 Chaudhuri JR, Barik D, Banik SK. Escape rate from a metastable state weakly interacting with a heat bath driven by external noise. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 73: 051101. PMID 16802912 DOI: 10.1103/Physreve.73.051101  0.314
2006 Barik D, Ray DS. Quantum equilibrium factor in the decay of a metastable state at low temperature Journal of Statistical Mechanics: Theory and Experiment. 2006: P06001-P06001. DOI: 10.1088/1742-5468/2006/06/P06001  0.571
2006 Barik D, Ghosh PK, Ray DS. Langevin dynamics with dichotomous noise; direct simulation and applications Journal of Statistical Mechanics: Theory and Experiment. 2006: P03010-P03010. DOI: 10.1088/1742-5468/2006/03/P03010  0.693
2006 Ghosh PK, Barik D, Ray DS. Inhomogeneous quantum diffusion and decay of a meta-stable state Physics Letters A. 360: 35-43. DOI: 10.1016/J.Physleta.2006.08.014  0.692
2005 Ghosh PK, Barik D, Bag BC, Ray DS. Quantum escape kinetics over a fluctuating barrier. The Journal of Chemical Physics. 123: 224104. PMID 16375467 DOI: 10.1063/1.2135781  0.698
2005 Ghosh PK, Barik D, Ray DS. Noise-induced quantum transport. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 71: 041107. PMID 15903657 DOI: 10.1103/Physreve.71.041107  0.7
2005 Ghosh PK, Barik D, Ray DS. Noise-induced transition in a quantum system Physics Letters A. 342: 12-21. DOI: 10.1016/J.Physleta.2005.04.097  0.698
2005 Barik D, Ray DS. Quantum State-Dependent Diffusion and Multiplicative Noise: A Microscopic Approach Journal of Statistical Physics. 120: 339-365. DOI: 10.1007/S10955-005-5251-Y  0.585
2004 Barik D, Ray DS. Anharmonic quantum contribution to vibrational dephasing. The Journal of Chemical Physics. 121: 1681-9. PMID 15260719 DOI: 10.1063/1.1766007  0.555
2003 Barik D, Bag BC, Ray DS. Numerical simulation of transmission coefficient using c-number Langevin equation The Journal of Chemical Physics. 119: 12973-12980. DOI: 10.1063/1.1628227  0.563
2003 Barik D, Banik SK, Ray DS. Quantum phase-space function formulation of reactive flux theory The Journal of Chemical Physics. 119: 680-695. DOI: 10.1063/1.1579473  0.573
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