| Year |
Citation |
Score |
| 2024 |
Shehata SI, Watkins JM, Burke JM, Parker R. Mechanisms and consequences of mRNA destabilization during viral infections. Virology Journal. 21: 38. PMID 38321453 DOI: 10.1186/s12985-024-02305-1 |
0.366 |
|
| 2023 |
Ripin N, Parker R. Formation, function, and pathology of RNP granules. Cell. 186: 4737-4756. PMID 37890457 DOI: 10.1016/j.cell.2023.09.006 |
0.306 |
|
| 2023 |
Huynh TN, Parker R. The PARN, TOE1, and USB1 RNA deadenylases and their roles in non-coding RNA regulation. The Journal of Biological Chemistry. 299: 105139. PMID 37544646 DOI: 10.1016/j.jbc.2023.105139 |
0.36 |
|
| 2023 |
Shehata SI, Parker R. SARS-CoV-2 Nsp1 mediated mRNA degradation requires mRNA interaction with the ribosome. Rna Biology. 20: 444-456. PMID 37415298 DOI: 10.1080/15476286.2023.2231280 |
0.531 |
|
| 2022 |
Burke JM, Ripin N, Ferretti MB, St Clair LA, Worden-Sapper ER, Salgado F, Sawyer SL, Perera R, Lynch KW, Parker R. RNase L activation in the cytoplasm induces aberrant processing of mRNAs in the nucleus. Plos Pathogens. 18: e1010930. PMID 36318584 DOI: 10.1371/journal.ppat.1010930 |
0.377 |
|
| 2022 |
Khong A, Matheny T, Huynh TN, Babl V, Parker R. Limited effects of mA modification on mRNA partitioning into stress granules. Nature Communications. 13: 3735. PMID 35768440 DOI: 10.1038/s41467-022-31358-5 |
0.412 |
|
| 2022 |
Decker CJ, Burke JM, Mulvaney PK, Parker R. RNA is required for the integrity of multiple nuclear and cytoplasmic membrane-less RNP granules. The Embo Journal. e110137. PMID 35355287 DOI: 10.15252/embj.2021110137 |
0.321 |
|
| 2021 |
Corbet GA, Burke JM, Parker R. ADAR1 limits stress granule formation through both translation-dependent and translation-independent mechanisms. Journal of Cell Science. PMID 34397095 DOI: 10.1242/jcs.258783 |
0.355 |
|
| 2021 |
Burke JM, St Clair LA, Perera R, Parker R. SARS-CoV-2 infection triggers widespread host mRNA decay leading to an mRNA export block. Rna (New York, N.Y.). PMID 34315815 DOI: 10.1261/rna.078923.121 |
0.427 |
|
| 2021 |
Burke JM, Gilchrist AR, Sawyer SL, Parker R. RNase L limits host and viral protein synthesis via inhibition of mRNA export. Science Advances. 7. PMID 34088676 DOI: 10.1126/sciadv.abh2479 |
0.384 |
|
| 2021 |
Burke JM, St Clair LA, Perera R, Parker R. Rapid decay of host basal mRNAs during SARS-CoV-2 infection perturbs host antiviral mRNA biogenesis and export. Biorxiv : the Preprint Server For Biology. PMID 33907748 DOI: 10.1101/2021.04.19.440452 |
0.369 |
|
| 2020 |
Matheny T, Van Treeck B, Huynh TN, Parker R. RNA partitioning into stress granules is based on the summation of multiple interactions. Rna (New York, N.Y.). PMID 33199441 DOI: 10.1261/rna.078204.120 |
0.323 |
|
| 2020 |
Shukla S, Jeong HC, Sturgeon CM, Parker R, Batista LFZ. Chemical inhibition of PAPD5/7 rescues telomerase function and hematopoiesis in dyskeratosis congenita. Blood Advances. 4: 2717-2722. PMID 32559291 DOI: 10.1182/Bloodadvances.2020001848 |
0.367 |
|
| 2020 |
Xing W, Muhlrad D, Parker R, Rosen MK. A quantitative inventory of yeast P body proteins reveals principles of composition and specificity. Elife. 9. PMID 32553117 DOI: 10.7554/Elife.56525 |
0.324 |
|
| 2020 |
Moon SL, Morisaki T, Stasevich TJ, Parker R. Coupling of translation quality control and mRNA targeting to stress granules. The Journal of Cell Biology. 219. PMID 32520986 DOI: 10.1083/Jcb.202004120 |
0.498 |
|
| 2020 |
Corbet GA, Parker R. RNP Granule Formation: Lessons from P-Bodies and Stress Granules. Cold Spring Harbor Symposia On Quantitative Biology. PMID 32482896 DOI: 10.1101/Sqb.2019.84.040329 |
0.435 |
|
| 2020 |
Tauber D, Tauber G, Parker R. Mechanisms and Regulation of RNA Condensation in RNP Granule Formation. Trends in Biochemical Sciences. PMID 32475683 DOI: 10.1016/J.Tibs.2020.05.002 |
0.42 |
|
| 2020 |
Lee JE, Cathey PI, Wu H, Parker R, Voeltz GK. Endoplasmic reticulum contact sites regulate the dynamics of membraneless organelles. Science (New York, N.Y.). 367. PMID 32001628 DOI: 10.1126/Science.Aay7108 |
0.307 |
|
| 2020 |
Cirillo L, Cieren A, Barbieri S, Khong A, Schwager F, Parker R, Gotta M. UBAP2L Forms Distinct Cores that Act in Nucleating Stress Granules Upstream of G3BP1. Current Biology : Cb. PMID 31956030 DOI: 10.1016/J.Cub.2019.12.020 |
0.393 |
|
| 2020 |
Tauber D, Tauber G, Khong A, Van Treeck B, Pelletier J, Parker R. Modulation of RNA Condensation by the DEAD-Box Protein eIF4A. Cell. PMID 31928844 DOI: 10.1016/J.Cell.2019.12.031 |
0.444 |
|
| 2020 |
Brocard M, Iadevaia V, Klein P, Hall B, Lewis G, Lu J, Burke J, Willcocks MM, Parker R, Goodfellow IG, Ruggieri A, Locker N. Norovirus infection results in eIF2α independent host translation shut-off and remodels the G3BP1 interactome evading stress granule formation. Plos Pathogens. 16: e1008250. PMID 31905230 DOI: 10.1371/Journal.Ppat.1008250 |
0.367 |
|
| 2020 |
Burke JM, Lester ET, Tauber D, Parker R. RNase L promotes the formation of unique ribonucleoprotein granules distinct from stress granules. The Journal of Biological Chemistry. PMID 31896577 DOI: 10.1074/Jbc.Ra119.011638 |
0.417 |
|
| 2019 |
Khong A, Parker R. The Landscape of Eukaryotic mRNPs. Rna (New York, N.Y.). PMID 31879280 DOI: 10.1261/Rna.073601.119 |
0.595 |
|
| 2019 |
Decker CJ, Steiner HR, Hoon-Hanks LL, Morrison JH, Haist KC, Stabell AC, Poeschla EM, Morrison TE, Stenglein MD, Sawyer SL, Parker R. dsRNA-Seq: Identification of Viral Infection by Purifying and Sequencing dsRNA. Viruses. 11. PMID 31615058 DOI: 10.3390/V11100943 |
0.346 |
|
| 2019 |
Matheny T, Rao B, Parker R. Transcriptome-wide comparison of stress granules and P-bodies reveals that translation plays a major role in RNA partitioning. Molecular and Cellular Biology. PMID 31591142 DOI: 10.1128/Mcb.00313-19 |
0.396 |
|
| 2019 |
Burke JM, Moon SL, Matheny T, Parker R. RNase L Reprograms Translation by Widespread mRNA Turnover Escaped by Antiviral mRNAs. Molecular Cell. PMID 31494035 DOI: 10.1016/J.Molcel.2019.07.029 |
0.526 |
|
| 2019 |
Baron DM, Matheny T, Lin YC, Leszyk JD, Kenna K, Gall KV, Santos DP, Tischbein M, Funes S, Hayward LJ, Kiskinis E, Landers JE, Parker R, Shaffer SA, Bosco DA. Quantitative proteomics identifies proteins that resist translational repression and become dysregulated in ALS-FUS. Human Molecular Genetics. PMID 30806671 DOI: 10.1093/Hmg/Ddz048 |
0.375 |
|
| 2019 |
Shukla S, Bjerke GA, Muhlrad D, Yi R, Parker R. The RNase PARN Controls the Levels of Specific miRNAs that Contribute to p53 Regulation. Molecular Cell. PMID 30770239 DOI: 10.1016/J.Molcel.2019.01.010 |
0.342 |
|
| 2019 |
Fok WC, Shukla S, Vessoni AT, Brenner KA, Parker R, Sturgeon CM, Batista LFZ. Posttranscriptional modulation of TERC by PAPD5 inhibition rescues hematopoietic development in dyskeratosis congenita. Blood. PMID 30728146 DOI: 10.1182/Blood-2018-11-885368 |
0.369 |
|
| 2019 |
Tauber D, Parker R. 15-Deoxy-Δ-prostaglandin J2 promotes phosphorylation of eukaryotic initiation factor 2α and activates the integrated stress response. The Journal of Biological Chemistry. PMID 30723157 DOI: 10.1074/Jbc.Ra118.007138 |
0.316 |
|
| 2019 |
Van Treeck B, Parker R. Principles of Stress Granules Revealed by Imaging Approaches. Cold Spring Harbor Perspectives in Biology. 11. PMID 30709880 DOI: 10.1101/Cshperspect.A033068 |
0.343 |
|
| 2019 |
Moon SL, Morisaki T, Khong A, Lyon K, Parker R, Stasevich TJ. Multicolour single-molecule tracking of mRNA interactions with RNP granules. Nature Cell Biology. PMID 30664789 DOI: 10.1038/S41556-018-0263-4 |
0.558 |
|
| 2019 |
Parker R, Updike DL. Decision letter: Recruitment of mRNAs to P granules by condensation with intrinsically-disordered proteins Elife. DOI: 10.7554/Elife.52896.Sa1 |
0.393 |
|
| 2018 |
Vogler TO, Wheeler JR, Nguyen ED, Hughes MP, Britson KA, Lester E, Rao B, Betta ND, Whitney ON, Ewachiw TE, Gomes E, Shorter J, Lloyd TE, Eisenberg DS, Taylor JP, ... ... Parker R, et al. TDP-43 and RNA form amyloid-like myo-granules in regenerating muscle. Nature. 563: 508-513. PMID 30464263 DOI: 10.1038/S41586-018-0665-2 |
0.36 |
|
| 2018 |
Khong A, Parker R. mRNP architecture in translating and stress conditions reveals an ordered pathway of mRNP compaction. The Journal of Cell Biology. PMID 30322972 DOI: 10.1083/Jcb.201806183 |
0.591 |
|
| 2018 |
Moon SL, Parker R. Analysis of eIF2B bodies and their relationships with stress granules and P-bodies. Scientific Reports. 8: 12264. PMID 30115954 DOI: 10.1038/S41598-018-30805-Y |
0.371 |
|
| 2018 |
Mittag T, Parker R. Multiple Modes of Protein-Protein Interactions Promote RNP Granule Assembly. Journal of Molecular Biology. PMID 30099026 DOI: 10.1016/J.Jmb.2018.08.005 |
0.367 |
|
| 2018 |
Van Treeck B, Parker R. Emerging Roles for Intermolecular RNA-RNA Interactions in RNP Assemblies. Cell. 174: 791-802. PMID 30096311 DOI: 10.1016/J.Cell.2018.07.023 |
0.413 |
|
| 2018 |
Braselmann E, Wierzba AJ, Polaski JT, Chromiński M, Holmes ZE, Hung ST, Batan D, Wheeler JR, Parker R, Jimenez R, Gryko D, Batey RT, Palmer AE. A multicolor riboswitch-based platform for imaging of RNA in live mammalian cells. Nature Chemical Biology. PMID 30061719 DOI: 10.1038/S41589-018-0103-7 |
0.401 |
|
| 2018 |
Bakthavachalu B, Huelsmeier J, Sudhakaran IP, Hillebrand J, Singh A, Petrauskas A, Thiagarajan D, Sankaranarayanan M, Mizoue L, Anderson EN, Pandey UB, Ross E, VijayRaghavan K, Parker R, Ramaswami M. RNP-Granule Assembly via Ataxin-2 Disordered Domains Is Required for Long-Term Memory and Neurodegeneration. Neuron. 98: 754-766.e4. PMID 29772202 DOI: 10.1016/J.Neuron.2018.04.032 |
0.582 |
|
| 2018 |
Moon SL, Parker R. EIF2B2 mutations in Vanishing White Matter Disease hyper- suppress translation and delay recovery during the integrated stress response. Rna (New York, N.Y.). PMID 29632131 DOI: 10.1261/Rna.066563.118 |
0.36 |
|
| 2018 |
Van Treeck B, Protter DSW, Matheny T, Khong A, Link CD, Parker R. RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome. Proceedings of the National Academy of Sciences of the United States of America. PMID 29483269 DOI: 10.1073/Pnas.1800038115 |
0.446 |
|
| 2018 |
Protter DSW, Rao BS, Van Treeck B, Lin Y, Mizoue L, Rosen MK, Parker R. Intrinsically Disordered Regions Can Contribute Promiscuous Interactions to RNP Granule Assembly. Cell Reports. 22: 1401-1412. PMID 29425497 DOI: 10.1016/J.Celrep.2018.01.036 |
0.358 |
|
| 2017 |
Khong A, Jain S, Matheny T, Wheeler JR, Parker R. Isolation of mammalian stress granule cores for RNA-Seq analysis. Methods (San Diego, Calif.). PMID 29196162 DOI: 10.1016/J.Ymeth.2017.11.012 |
0.403 |
|
| 2017 |
Tutucci E, Vera M, Biswas J, Garcia J, Parker R, Singer RH. An improved MS2 system for accurate reporting of the mRNA life cycle. Nature Methods. PMID 29131164 DOI: 10.1038/Nmeth.4502 |
0.528 |
|
| 2017 |
Khong A, Matheny T, Jain S, Mitchell SF, Wheeler JR, Parker R. The Stress Granule Transcriptome Reveals Principles of mRNA Accumulation in Stress Granules. Molecular Cell. PMID 29129640 DOI: 10.1016/J.Molcel.2017.10.015 |
0.476 |
|
| 2017 |
Rao BS, Parker R. Numerous interactions act redundantly to assemble a tunable size of P bodies in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. PMID 29078371 DOI: 10.1073/Pnas.1712396114 |
0.426 |
|
| 2017 |
Harigaya Y, Parker R. Erratum to: the link between adjacent codon pairs and mRNA stability. Bmc Genomics. 18: 704. PMID 28886693 DOI: 10.1186/S12864-017-4088-5 |
0.498 |
|
| 2017 |
Shukla S, Parker R. PARN modulates Y RNA stability, 3' end formation and its modification. Molecular and Cellular Biology. PMID 28760775 DOI: 10.1128/Mcb.00264-17 |
0.436 |
|
| 2017 |
Harigaya Y, Parker R. The link between adjacent codon pairs and mRNA stability. Bmc Genomics. 18: 364. PMID 28486986 DOI: 10.1186/S12864-017-3749-8 |
0.512 |
|
| 2017 |
Wheeler JR, Jain S, Kong A, Parker R. Isolation of yeast and mammalian stress granule cores. Methods (San Diego, Calif.). PMID 28457979 DOI: 10.1016/J.Ymeth.2017.04.020 |
0.34 |
|
| 2017 |
Parker R. Decision letter: Non-invasive measurement of mRNA decay reveals translation initiation as the major determinant of mRNA stability Elife. DOI: 10.7554/Elife.32536.078 |
0.5 |
|
| 2016 |
Walters RW, Matheny T, Mizoue LS, Rao BS, Muhlrad D, Parker R. Identification of NAD+ capped mRNAs in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. PMID 28031484 DOI: 10.1073/Pnas.1619369114 |
0.536 |
|
| 2016 |
Harigaya Y, Parker R. Analysis of the association between codon optimality and mRNA stability in Schizosaccharomyces pombe. Bmc Genomics. 17: 895. PMID 27825301 DOI: 10.1186/S12864-016-3237-6 |
0.451 |
|
| 2016 |
Harigaya Y, Parker R. Codon optimality and mRNA decay. Cell Research. PMID 27811910 DOI: 10.1038/Cr.2016.127 |
0.44 |
|
| 2016 |
Poornima G, Shah S, Vignesh V, Parker R, Rajyaguru PI. Arginine methylation promotes translation repression activity of eIF4G-binding protein, Scd6. Nucleic Acids Research. PMID 27613419 DOI: 10.1093/Nar/Gkw762 |
0.376 |
|
| 2016 |
Wheeler JR, Matheny T, Jain S, Abrisch R, Parker R. Distinct stages in stress granule assembly and disassembly. Elife. 5. PMID 27602576 DOI: 10.7554/Elife.18413 |
0.378 |
|
| 2016 |
Banani SF, Rice AM, Peeples WB, Lin Y, Jain S, Parker R, Rosen MK. Compositional Control of Phase-Separated Cellular Bodies. Cell. PMID 27374333 DOI: 10.1016/J.Cell.2016.06.010 |
0.355 |
|
| 2016 |
Protter DS, Parker R. Principles and Properties of Stress Granules. Trends in Cell Biology. PMID 27289443 DOI: 10.1016/J.Tcb.2016.05.004 |
0.365 |
|
| 2016 |
Shukla S, Parker R. Hypo- and Hyper-Assembly Diseases of RNA-Protein Complexes. Trends in Molecular Medicine. PMID 27263464 DOI: 10.1016/J.Molmed.2016.05.005 |
0.363 |
|
| 2016 |
Eshleman N, Liu G, McGrath K, Parker R, Buchan JR. Defects in THO/TREX-2 function cause accumulation of novel cytoplasmic mRNP granules that can be cleared by autophagy. Rna (New York, N.Y.). PMID 27251550 DOI: 10.1261/Rna.057224.116 |
0.454 |
|
| 2016 |
Garcia JF, Parker R. Ubiquitous accumulation of 3' mRNA decay fragments in Saccharomyces cerevisiae mRNAs with chromosomally integrated MS2 arrays. Rna (New York, N.Y.). 22: 657-9. PMID 27090788 DOI: 10.1261/Rna.056325.116 |
0.449 |
|
| 2016 |
Mitchell SF, Parker R. Identification of Endogenous mRNA-Binding Proteins in Yeast Using Crosslinking and PolyA Enrichment. Methods in Molecular Biology (Clifton, N.J.). 1421: 153-63. PMID 26965264 DOI: 10.1007/978-1-4939-3591-8_13 |
0.548 |
|
| 2016 |
Shukla S, Schmidt JC, Goldfarb KC, Cech TR, Parker R. Inhibition of telomerase RNA decay rescues telomerase deficiency caused by dyskerin or PARN defects. Nature Structural & Molecular Biology. PMID 26950371 DOI: 10.1038/Nsmb.3184 |
0.444 |
|
| 2016 |
Lasda E, Parker R. Circular RNAs Co-Precipitate with Extracellular Vesicles: A Possible Mechanism for circRNA Clearance. Plos One. 11: e0148407. PMID 26848835 DOI: 10.1371/Journal.Pone.0148407 |
0.312 |
|
| 2016 |
Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K, Adhihetty PJ, Adler SG, Agam G, Agarwal R, Aghi MK, ... ... Parker R, et al. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy. 12: 1-222. PMID 26799652 DOI: 10.1080/15548627.2015.1100356 |
0.314 |
|
| 2016 |
Jain S, Wheeler JR, Walters RW, Agrawal A, Barsic A, Parker R. ATPase-Modulated Stress Granules Contain a Diverse Proteome and Substructure. Cell. PMID 26777405 DOI: 10.1016/J.Cell.2015.12.038 |
0.344 |
|
| 2015 |
Mitchell SF, Parker R. Modifications on Translation Initiation. Cell. 163: 796-8. PMID 26544933 DOI: 10.1016/J.Cell.2015.10.056 |
0.36 |
|
| 2015 |
Lin Y, Protter DS, Rosen MK, Parker R. Formation and Maturation of Phase-Separated Liquid Droplets by RNA-Binding Proteins. Molecular Cell. PMID 26412307 DOI: 10.1016/J.Molcel.2015.08.018 |
0.369 |
|
| 2015 |
Walters RW, Parker R. Coupling of Ribostasis and Proteostasis: Hsp70 Proteins in mRNA Metabolism. Trends in Biochemical Sciences. 40: 552-9. PMID 26410596 DOI: 10.1016/J.Tibs.2015.08.004 |
0.539 |
|
| 2015 |
Walters RW, Muhlrad D, Garcia J, Parker R. Differential effects of Ydj1 and Sis1 on Hsp70-mediated clearance of stress granules in Saccharomyces cerevisiae. Rna (New York, N.Y.). 21: 1660-71. PMID 26199455 DOI: 10.1261/Rna.053116.115 |
0.359 |
|
| 2015 |
Garcia JF, Parker R. MS2 coat proteins bound to yeast mRNAs block 5' to 3' degradation and trap mRNA decay products: implications for the localization of mRNAs by MS2-MCP system. Rna (New York, N.Y.). 21: 1393-5. PMID 26092944 DOI: 10.1261/Rna.051797.115 |
0.437 |
|
| 2015 |
Mitchell SF, Parker R. In vivo cross-linking followed by polyA enrichment to identify yeast mRNA binding proteins. Methods in Molecular Biology (Clifton, N.J.). 1259: 35-47. PMID 25579578 DOI: 10.1007/978-1-4939-2214-7_3 |
0.538 |
|
| 2014 |
Lasda E, Parker R. Circular RNAs: diversity of form and function. Rna (New York, N.Y.). 20: 1829-42. PMID 25404635 DOI: 10.1261/Rna.047126.114 |
0.423 |
|
| 2014 |
Shukla S, Parker R. Quality control of assembly-defective U1 snRNAs by decapping and 5'-to-3' exonucleolytic digestion. Proceedings of the National Academy of Sciences of the United States of America. 111: E3277-86. PMID 25071210 DOI: 10.1073/Pnas.1412614111 |
0.377 |
|
| 2014 |
Mitchell SF, Parker R. Principles and properties of eukaryotic mRNPs. Molecular Cell. 54: 547-58. PMID 24856220 DOI: 10.1016/J.Molcel.2014.04.033 |
0.583 |
|
| 2014 |
Harigaya Y, Parker R. Fragile X mental retardation protein and the ribosome. Molecular Cell. 54: 330-2. PMID 24813710 DOI: 10.1016/J.Molcel.2014.04.027 |
0.336 |
|
| 2014 |
Decker CJ, Parker R. Analysis of double-stranded RNA from microbial communities identifies double-stranded RNA virus-like elements. Cell Reports. 7: 898-906. PMID 24767992 DOI: 10.1016/J.Celrep.2014.03.049 |
0.351 |
|
| 2014 |
Walters R, Parker R. Quality control: Is there quality control of localized mRNAs? The Journal of Cell Biology. 204: 863-8. PMID 24637320 DOI: 10.1083/Jcb.201401059 |
0.524 |
|
| 2014 |
Walters RW, Shumilin IA, Yoon JH, Minor W, Parker R. Edc3 function in yeast and mammals is modulated by interaction with NAD-related compounds. G3 (Bethesda, Md.). 4: 613-22. PMID 24504254 DOI: 10.1534/G3.114.010470 |
0.508 |
|
| 2014 |
Sudhakaran IP, Hillebrand J, Dervan A, Das S, Holohan EE, Hülsmeier J, Sarov M, Parker R, VijayRaghavan K, Ramaswami M. FMRP and Ataxin-2 function together in long-term olfactory habituation and neuronal translational control. Proceedings of the National Academy of Sciences of the United States of America. 111: E99-E108. PMID 24344294 DOI: 10.1073/Pnas.1309543111 |
0.655 |
|
| 2014 |
Wu D, Muhlrad D, Bowler MW, Jiang S, Liu Z, Parker R, Song H. Lsm2 and Lsm3 bridge the interaction of the Lsm1-7 complex with Pat1 for decapping activation. Cell Research. 24: 233-46. PMID 24247251 DOI: 10.1038/Cr.2013.152 |
0.351 |
|
| 2013 |
Ramaswami M, Taylor JP, Parker R. Altered ribostasis: RNA-protein granules in degenerative disorders. Cell. 154: 727-36. PMID 23953108 DOI: 10.1016/J.Cell.2013.07.038 |
0.63 |
|
| 2013 |
Buchan JR, Kolaitis RM, Taylor JP, Parker R. Eukaryotic stress granules are cleared by autophagy and Cdc48/VCP function. Cell. 153: 1461-74. PMID 23791177 DOI: 10.1016/J.Cell.2013.05.037 |
0.384 |
|
| 2013 |
Jain S, Parker R. The discovery and analysis of P Bodies. Advances in Experimental Medicine and Biology. 768: 23-43. PMID 23224963 DOI: 10.1007/978-1-4614-5107-5_3 |
0.497 |
|
| 2013 |
Mitchell SF, Jain S, She M, Parker R. Global analysis of yeast mRNPs. Nature Structural & Molecular Biology. 20: 127-33. PMID 23222640 DOI: 10.1038/Nsmb.2468 |
0.521 |
|
| 2012 |
Lai T, Cho H, Liu Z, Bowler MW, Piao S, Parker R, Kim YK, Song H. Structural basis of the PNRC2-mediated link between mrna surveillance and decapping. Structure (London, England : 1993). 20: 2025-37. PMID 23085078 DOI: 10.1016/J.Str.2012.09.009 |
0.528 |
|
| 2012 |
Luhtala N, Parker R. Structure-function analysis of Rny1 in tRNA cleavage and growth inhibition. Plos One. 7: e41111. PMID 22829915 DOI: 10.1371/Journal.Pone.0041111 |
0.325 |
|
| 2012 |
Parker R. RNA degradation in Saccharomyces cerevisae. Genetics. 191: 671-702. PMID 22785621 DOI: 10.1534/Genetics.111.137265 |
0.42 |
|
| 2012 |
Rajyaguru P, Parker R. RGG motif proteins: modulators of mRNA functional states. Cell Cycle (Georgetown, Tex.). 11: 2594-9. PMID 22767211 DOI: 10.4161/Cc.20716 |
0.531 |
|
| 2012 |
Decker CJ, Parker R. P-bodies and stress granules: possible roles in the control of translation and mRNA degradation. Cold Spring Harbor Perspectives in Biology. 4: a012286. PMID 22763747 DOI: 10.1101/Cshperspect.A012286 |
0.525 |
|
| 2012 |
Harigaya Y, Parker R. Global analysis of mRNA decay intermediates in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 109: 11764-9. PMID 22752303 DOI: 10.1073/Pnas.1119741109 |
0.577 |
|
| 2012 |
Rajyaguru P, She M, Parker R. Scd6 targets eIF4G to repress translation: RGG motif proteins as a class of eIF4G-binding proteins. Molecular Cell. 45: 244-54. PMID 22284680 DOI: 10.1016/J.Molcel.2011.11.026 |
0.49 |
|
| 2011 |
Swisher KD, Parker R. Interactions between Upf1 and the decapping factors Edc3 and Pat1 in Saccharomyces cerevisiae. Plos One. 6: e26547. PMID 22065998 DOI: 10.1371/Journal.Pone.0026547 |
0.452 |
|
| 2011 |
Chekulaeva M, Mathys H, Zipprich JT, Attig J, Colic M, Parker R, Filipowicz W. miRNA repression involves GW182-mediated recruitment of CCR4-NOT through conserved W-containing motifs. Nature Structural & Molecular Biology. 18: 1218-26. PMID 21984184 DOI: 10.1038/Nsmb.2166 |
0.422 |
|
| 2011 |
Hilliker A, Gao Z, Jankowsky E, Parker R. The DEAD-box protein Ded1 modulates translation by the formation and resolution of an eIF4F-mRNA complex. Molecular Cell. 43: 962-72. PMID 21925384 DOI: 10.1016/J.Molcel.2011.08.008 |
0.556 |
|
| 2011 |
McCann C, Holohan EE, Das S, Dervan A, Larkin A, Lee JA, Rodrigues V, Parker R, Ramaswami M. The Ataxin-2 protein is required for microRNA function and synapse-specific long-term olfactory habituation. Proceedings of the National Academy of Sciences of the United States of America. 108: E655-62. PMID 21795609 DOI: 10.1073/Pnas.1107198108 |
0.609 |
|
| 2011 |
Balagopal V, Parker R. Stm1 modulates translation after 80S formation in Saccharomyces cerevisiae. Rna (New York, N.Y.). 17: 835-42. PMID 21460238 DOI: 10.1261/Rna.2677311 |
0.557 |
|
| 2011 |
Buchan JR, Yoon JH, Parker R. Stress-specific composition, assembly and kinetics of stress granules in Saccharomyces cerevisiae. Journal of Cell Science. 124: 228-39. PMID 21172806 DOI: 10.1242/Jcs.078444 |
0.346 |
|
| 2010 |
Harigaya Y, Parker R. No-go decay: a quality control mechanism for RNA in translation. Wiley Interdisciplinary Reviews. Rna. 1: 132-41. PMID 21956910 DOI: 10.1002/Wrna.17 |
0.543 |
|
| 2010 |
Hillebrand J, Pan K, Kokaram A, Barbee S, Parker R, Ramaswami M. The Me31B DEAD-Box Helicase Localizes to Postsynaptic Foci and Regulates Expression of a CaMKII Reporter mRNA in Dendrites of Drosophila Olfactory Projection Neurons. Frontiers in Neural Circuits. 4: 121. PMID 21267420 DOI: 10.3389/Fncir.2010.00121 |
0.685 |
|
| 2010 |
Buchan JR, Nissan T, Parker R. Analyzing P-bodies and stress granules in Saccharomyces cerevisiae. Methods in Enzymology. 470: 619-40. PMID 20946828 DOI: 10.1016/S0076-6879(10)70025-2 |
0.791 |
|
| 2010 |
Chen L, Muhlrad D, Hauryliuk V, Cheng Z, Lim MK, Shyp V, Parker R, Song H. Structure of the Dom34-Hbs1 complex and implications for no-go decay. Nature Structural & Molecular Biology. 17: 1233-40. PMID 20890290 DOI: 10.1038/Nsmb.1922 |
0.385 |
|
| 2010 |
Nissan T, Rajyaguru P, She M, Song H, Parker R. Decapping activators in Saccharomyces cerevisiae act by multiple mechanisms. Molecular Cell. 39: 773-83. PMID 20832728 DOI: 10.1016/J.Molcel.2010.08.025 |
0.802 |
|
| 2010 |
Chekulaeva M, Parker R, Filipowicz W. The GW/WG repeats of Drosophila GW182 function as effector motifs for miRNA-mediated repression. Nucleic Acids Research. 38: 6673-83. PMID 20530530 DOI: 10.1093/Nar/Gkq501 |
0.455 |
|
| 2010 |
Yoon JH, Choi EJ, Parker R. Dcp2 phosphorylation by Ste20 modulates stress granule assembly and mRNA decay in Saccharomyces cerevisiae. The Journal of Cell Biology. 189: 813-27. PMID 20513766 DOI: 10.1083/Jcb.200912019 |
0.561 |
|
| 2010 |
Swisher KD, Parker R. Localization to, and effects of Pbp1, Pbp4, Lsm12, Dhh1, and Pab1 on stress granules in Saccharomyces cerevisiae. Plos One. 5: e10006. PMID 20368989 DOI: 10.1371/Journal.Pone.0010006 |
0.368 |
|
| 2010 |
Yoon JH, Parker R. Coil-in-to snRNP assembly and Cajal bodies. Nature Structural & Molecular Biology. 17: 391-3. PMID 20368721 DOI: 10.1038/Nsmb0410-391 |
0.307 |
|
| 2010 |
Harigaya Y, Jones BN, Muhlrad D, Gross JD, Parker R. Identification and analysis of the interaction between Edc3 and Dcp2 in Saccharomyces cerevisiae. Molecular and Cellular Biology. 30: 1446-56. PMID 20086104 DOI: 10.1128/Mcb.01305-09 |
0.548 |
|
| 2009 |
Buchan JR, Parker R. Eukaryotic stress granules: the ins and outs of translation. Molecular Cell. 36: 932-41. PMID 20064460 DOI: 10.1016/J.Molcel.2009.11.020 |
0.538 |
|
| 2009 |
Thompson DM, Parker R. Stressing out over tRNA cleavage. Cell. 138: 215-9. PMID 19632169 DOI: 10.1016/J.Cell.2009.07.001 |
0.339 |
|
| 2009 |
Luhtala N, Parker R. LSM1 over-expression in Saccharomyces cerevisiae depletes U6 snRNA levels. Nucleic Acids Research. 37: 5529-36. PMID 19596813 DOI: 10.1093/Nar/Gkp572 |
0.46 |
|
| 2009 |
Cziko AM, McCann CT, Howlett IC, Barbee SA, Duncan RP, Luedemann R, Zarnescu D, Zinsmaier KE, Parker RR, Ramaswami M. Genetic modifiers of dFMR1 encode RNA granule components in Drosophila. Genetics. 182: 1051-60. PMID 19487564 DOI: 10.1534/Genetics.109.103234 |
0.659 |
|
| 2009 |
Swisher KD, Parker R. Related mechanisms for mRNA and rRNA quality control. Molecular Cell. 34: 401-2. PMID 19481519 DOI: 10.1016/J.Molcel.2009.05.008 |
0.474 |
|
| 2009 |
Passos DO, Doma MK, Shoemaker CJ, Muhlrad D, Green R, Weissman J, Hollien J, Parker R. Analysis of Dom34 and its function in no-go decay. Molecular Biology of the Cell. 20: 3025-32. PMID 19420139 DOI: 10.1091/Mbc.E09-01-0028 |
0.575 |
|
| 2009 |
Balagopal V, Parker R. Polysomes, P bodies and stress granules: states and fates of eukaryotic mRNAs. Current Opinion in Cell Biology. 21: 403-8. PMID 19394210 DOI: 10.1016/J.Ceb.2009.03.005 |
0.581 |
|
| 2009 |
Thompson DM, Parker R. The RNase Rny1p cleaves tRNAs and promotes cell death during oxidative stress in Saccharomyces cerevisiae. The Journal of Cell Biology. 185: 43-50. PMID 19332891 DOI: 10.1083/Jcb.200811119 |
0.302 |
|
| 2009 |
Chekulaeva M, Filipowicz W, Parker R. Multiple independent domains of dGW182 function in miRNA-mediated repression in Drosophila. Rna (New York, N.Y.). 15: 794-803. PMID 19304924 DOI: 10.1261/Rna.1364909 |
0.399 |
|
| 2009 |
Rajyaguru P, Parker R. CGH-1 and the control of maternal mRNAs. Trends in Cell Biology. 19: 24-8. PMID 19062290 DOI: 10.1016/J.Tcb.2008.11.001 |
0.576 |
|
| 2009 |
Balagopal V, Parker R. Stm1 modulates mRNA decay and Dhh1 function in Saccharomyces cerevisiae. Genetics. 181: 93-103. PMID 19015546 DOI: 10.1534/Genetics.108.092601 |
0.548 |
|
| 2009 |
Cheng Z, Liu Y, Wang C, Parker R, Song H. Crystal structure of Ski8p, a WD-repeat protein with dual roles in mRNA metabolism and meiotic recombination Protein Science. 13: 2673-2684. PMID 15340168 DOI: 10.1110/Ps.04856504 |
0.426 |
|
| 2008 |
Nissan T, Parker R. Analyzing P-bodies in Saccharomyces cerevisiae. Methods in Enzymology. 448: 507-20. PMID 19111192 DOI: 10.1016/S0076-6879(08)02625-6 |
0.801 |
|
| 2008 |
Passos DO, Parker R. Analysis of cytoplasmic mRNA decay in Saccharomyces cerevisiae. Methods in Enzymology. 448: 409-27. PMID 19111187 DOI: 10.1016/S0076-6879(08)02620-7 |
0.571 |
|
| 2008 |
Buchan JR, Muhlrad D, Parker R. P bodies promote stress granule assembly in Saccharomyces cerevisiae. The Journal of Cell Biology. 183: 441-55. PMID 18981231 DOI: 10.1083/Jcb.200807043 |
0.411 |
|
| 2008 |
Hilliker A, Parker R. Stressed out? Make some modifications! Nature Cell Biology. 10: 1129-30. PMID 18830219 DOI: 10.1038/Ncb1008-1129 |
0.489 |
|
| 2008 |
Thompson DM, Lu C, Green PJ, Parker R. tRNA cleavage is a conserved response to oxidative stress in eukaryotes. Rna (New York, N.Y.). 14: 2095-103. PMID 18719243 DOI: 10.1261/Rna.1232808 |
0.357 |
|
| 2008 |
Pedro-Segura E, Vergara SV, Rodríguez-Navarro S, Parker R, Thiele DJ, Puig S. The Cth2 ARE-binding protein recruits the Dhh1 helicase to promote the decay of succinate dehydrogenase SDH4 mRNA in response to iron deficiency. The Journal of Biological Chemistry. 283: 28527-35. PMID 18715869 DOI: 10.1074/Jbc.M804910200 |
0.509 |
|
| 2008 |
Ling SH, Decker CJ, Walsh MA, She M, Parker R, Song H. Crystal structure of human Edc3 and its functional implications. Molecular and Cellular Biology. 28: 5965-76. PMID 18678652 DOI: 10.1128/Mcb.00761-08 |
0.425 |
|
| 2008 |
Nissan T, Parker R. Computational analysis of miRNA-mediated repression of translation: implications for models of translation initiation inhibition. Rna (New York, N.Y.). 14: 1480-91. PMID 18579870 DOI: 10.1261/Rna.1072808 |
0.738 |
|
| 2008 |
Beckham CJ, Parker R. P bodies, stress granules, and viral life cycles. Cell Host & Microbe. 3: 206-12. PMID 18407064 DOI: 10.1016/J.Chom.2008.03.004 |
0.508 |
|
| 2008 |
She M, Decker CJ, Svergun DI, Round A, Chen N, Muhlrad D, Parker R, Song H. Structural basis of dcp2 recognition and activation by dcp1. Molecular Cell. 29: 337-49. PMID 18280239 DOI: 10.1016/J.Molcel.2008.01.002 |
0.348 |
|
| 2008 |
Beckham C, Hilliker A, Cziko AM, Noueiry A, Ramaswami M, Parker R. The DEAD-box RNA helicase Ded1p affects and accumulates in Saccharomyces cerevisiae P-bodies. Molecular Biology of the Cell. 19: 984-93. PMID 18162578 DOI: 10.1091/Mbc.E07-09-0954 |
0.677 |
|
| 2008 |
Pilkington GR, Parker R. Pat1 contains distinct functional domains that promote P-body assembly and activation of decapping. Molecular and Cellular Biology. 28: 1298-312. PMID 18086885 DOI: 10.1128/Mcb.00936-07 |
0.579 |
|
| 2007 |
Buchan JR, Parker R. Molecular biology. The two faces of miRNA. Science (New York, N.Y.). 318: 1877-8. PMID 18096794 DOI: 10.1126/Science.1152623 |
0.368 |
|
| 2007 |
Doma MK, Parker R. RNA quality control in eukaryotes. Cell. 131: 660-8. PMID 18022361 DOI: 10.1016/J.Cell.2007.10.041 |
0.457 |
|
| 2007 |
Decker CJ, Teixeira D, Parker R. Edc3p and a glutamine/asparagine-rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae. The Journal of Cell Biology. 179: 437-49. PMID 17984320 DOI: 10.1083/Jcb.200704147 |
0.469 |
|
| 2007 |
Beckham CJ, Light HR, Nissan TA, Ahlquist P, Parker R, Noueiry A. Interactions between brome mosaic virus RNAs and cytoplasmic processing bodies. Journal of Virology. 81: 9759-68. PMID 17609284 DOI: 10.1128/Jvi.00844-07 |
0.771 |
|
| 2007 |
Brengues M, Parker R. Accumulation of polyadenylated mRNA, Pab1p, eIF4E, and eIF4G with P-bodies in Saccharomyces cerevisiae. Molecular Biology of the Cell. 18: 2592-602. PMID 17475768 DOI: 10.1091/Mbc.E06-12-1149 |
0.543 |
|
| 2007 |
Teixeira D, Parker R. Analysis of P-body assembly in Saccharomyces cerevisiae. Molecular Biology of the Cell. 18: 2274-87. PMID 17429074 DOI: 10.1091/Mbc.E07-03-0199 |
0.37 |
|
| 2007 |
Parker R, Sheth U. P bodies and the control of mRNA translation and degradation. Molecular Cell. 25: 635-46. PMID 17349952 DOI: 10.1016/J.Molcel.2007.02.011 |
0.55 |
|
| 2007 |
Cheng Z, Muhlrad D, Lim MK, Parker R, Song H. Structural and functional insights into the human Upf1 helicase core. The Embo Journal. 26: 253-64. PMID 17159905 DOI: 10.1038/Sj.Emboj.7601464 |
0.425 |
|
| 2007 |
Thompson DM, Parker R. Cytoplasmic decay of intergenic transcripts in Saccharomyces cerevisiae. Molecular and Cellular Biology. 27: 92-101. PMID 17074811 DOI: 10.1128/Mcb.01023-06 |
0.499 |
|
| 2006 |
Barbee SA, Estes PS, Cziko AM, Hillebrand J, Luedeman RA, Coller JM, Johnson N, Howlett IC, Geng C, Ueda R, Brand AH, Newbury SF, Wilhelm JE, Levine RB, Nakamura A, ... Parker R, et al. Staufen- and FMRP-containing neuronal RNPs are structurally and functionally related to somatic P bodies. Neuron. 52: 997-1009. PMID 17178403 DOI: 10.1016/J.Neuron.2006.10.028 |
0.672 |
|
| 2006 |
Doma MK, Parker R. Revenge of the NRD: preferential degradation of nonfunctional eukaryotic rRNA. Developmental Cell. 11: 757-8. PMID 17141152 DOI: 10.1016/J.Devcel.2006.11.004 |
0.451 |
|
| 2006 |
Hilgers V, Teixeira D, Parker R. Translation-independent inhibition of mRNA deadenylation during stress in Saccharomyces cerevisiae. Rna (New York, N.Y.). 12: 1835-45. PMID 16940550 DOI: 10.1261/Rna.241006 |
0.49 |
|
| 2006 |
Baker KE, Parker R. Conventional 3' end formation is not required for NMD substrate recognition in Saccharomyces cerevisiae. Rna (New York, N.Y.). 12: 1441-5. PMID 16809819 DOI: 10.1261/Rna.92706 |
0.622 |
|
| 2006 |
Segal SP, Dunckley T, Parker R. Sbp1p affects translational repression and decapping in Saccharomyces cerevisiae. Molecular and Cellular Biology. 26: 5120-30. PMID 16782896 DOI: 10.1128/Mcb.01913-05 |
0.615 |
|
| 2006 |
Sheth U, Parker R. Targeting of aberrant mRNAs to cytoplasmic processing bodies. Cell. 125: 1095-109. PMID 16777600 DOI: 10.1016/J.Cell.2006.04.037 |
0.535 |
|
| 2006 |
Decker CJ, Parker R. CAR-1 and trailer hitch: driving mRNP granule function at the ER? The Journal of Cell Biology. 173: 159-63. PMID 16636142 DOI: 10.1083/Jcb.200601153 |
0.558 |
|
| 2006 |
Doma MK, Parker R. Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation. Nature. 440: 561-4. PMID 16554824 DOI: 10.1038/Nature04530 |
0.611 |
|
| 2006 |
Valencia-Sanchez MA, Liu J, Hannon GJ, Parker R. Control of translation and mRNA degradation by miRNAs and siRNAs. Genes & Development. 20: 515-24. PMID 16510870 DOI: 10.1101/Gad.1399806 |
0.539 |
|
| 2006 |
Beliakova-Bethell N, Beckham C, Giddings TH, Winey M, Parker R, Sandmeyer S. Virus-like particles of the Ty3 retrotransposon assemble in association with P-body components Rna. 12: 94-101. PMID 16373495 DOI: 10.1261/Rna.2264806 |
0.416 |
|
| 2005 |
Liu J, Rivas FV, Wohlschlegel J, Yates JR, Parker R, Hannon GJ. A role for the P-body component GW182 in microRNA function. Nature Cell Biology. 7: 1261-6. PMID 16284623 DOI: 10.1038/Ncb1333 |
0.523 |
|
| 2005 |
Coller J, Parker R. General translational repression by activators of mRNA decapping. Cell. 122: 875-86. PMID 16179257 DOI: 10.1016/J.Cell.2005.07.012 |
0.584 |
|
| 2005 |
Brengues M, Teixeira D, Parker R. Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies. Science (New York, N.Y.). 310: 486-9. PMID 16141371 DOI: 10.1126/Science.1115791 |
0.549 |
|
| 2005 |
Wilson MA, Meaux S, Parker R, van Hoof A. Genetic interactions between [PSI+] and nonstop mRNA decay affect phenotypic variation. Proceedings of the National Academy of Sciences of the United States of America. 102: 10244-9. PMID 16002465 DOI: 10.1073/Pnas.0504557102 |
0.482 |
|
| 2005 |
Cheng Z, Coller J, Parker R, Song H. Crystal structure and functional analysis of DEAD-box protein Dhh1p. Rna (New York, N.Y.). 11: 1258-70. PMID 15987810 DOI: 10.1261/Rna.2920905 |
0.428 |
|
| 2005 |
Liu J, Valencia-Sanchez MA, Hannon GJ, Parker R. MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies. Nature Cell Biology. 7: 719-23. PMID 15937477 DOI: 10.1038/Ncb1274 |
0.508 |
|
| 2005 |
Chen N, Walsh MA, Liu Y, Parker R, Song H. Crystal structures of human DcpS in ligand-free and m7GDP-bound forms suggest a dynamic mechanism for scavenger mRNA decapping. Journal of Molecular Biology. 347: 707-18. PMID 15769464 DOI: 10.1016/J.Jmb.2005.01.062 |
0.35 |
|
| 2005 |
Tharun S, Muhlrad D, Chowdhury A, Parker R. Mutations in the Saccharomyces cerevisiae LSM1 gene that affect mRNA decapping and 3' end protection. Genetics. 170: 33-46. PMID 15716506 DOI: 10.1534/Genetics.104.034322 |
0.561 |
|
| 2005 |
Muhlrad D, Parker R. The yeast EDC1 mRNA undergoes deadenylation-independent decapping stimulated by Not2p, Not4p, and Not5p The Embo Journal. 24: 1033-1045. PMID 15706350 DOI: 10.1038/Sj.Emboj.7600560 |
0.588 |
|
| 2005 |
Teixeira D, Sheth U, Valencia-Sanchez MA, Brengues M, Parker R. Processing bodies require RNA for assembly and contain nontranslating mRNAs Rna. 11: 371-382. PMID 15703442 DOI: 10.1261/Rna.7258505 |
0.484 |
|
| 2004 |
Baker KE, Coller J, Parker R. The yeast Apq12 protein affects nucleocytoplasmic mRNA transport Rna. 10: 1352-1358. PMID 15273328 DOI: 10.1261/Rna.7420504 |
0.581 |
|
| 2004 |
Coller J, Parker R. Eukaryotic mRNA Decapping Annual Review of Biochemistry. 73: 861-890. PMID 15189161 DOI: 10.1146/Annurev.Biochem.73.011303.074032 |
0.579 |
|
| 2004 |
Baker KE, Parker R. Nonsense-mediated mRNA decay: terminating erroneous gene expression. Current Opinion in Cell Biology. 16: 293-9. PMID 15145354 DOI: 10.1016/J.Ceb.2004.03.003 |
0.572 |
|
| 2004 |
Kshirsagar M, Parker R. Identification of Edc3p as an Enhancer of mRNA Decapping in Saccharomyces cerevisiae Genetics. 166: 729-739. PMID 15020463 DOI: 10.1534/Genetics.166.2.729 |
0.573 |
|
| 2004 |
She M, Decker CJ, Sundramurthy K, Liu Y, Chen N, Parker R, Song H. Crystal structure of Dcp1p and its functional implications in mRNA decapping Nature Structural and Molecular Biology. 11: 249-256. PMID 14758354 DOI: 10.1038/Nsmb730 |
0.403 |
|
| 2004 |
Parker R, Song H. The enzymes and control of eukaryotic mRNA turnover. Nature Structural & Molecular Biology. 11: 121-7. PMID 14749774 DOI: 10.1038/Nsmb724 |
0.55 |
|
| 2003 |
Hilleren PJ, Parker R. Cytoplasmic degradation of splice-defective pre-mRNAs and intermediates. Molecular Cell. 12: 1453-65. PMID 14690599 DOI: 10.1016/S1097-2765(03)00488-X |
0.837 |
|
| 2003 |
Cao D, Parker R. Computational modeling and experimental analysis of nonsense-mediated decay in yeast Cell. 113: 533-545. PMID 12757713 DOI: 10.1016/S0092-8674(03)00353-2 |
0.562 |
|
| 2003 |
Sheth U, Parker R. Decapping and Decay of Messenger RNA Occur in Cytoplasmic Processing Bodies Science. 300: 805-808. PMID 12730603 DOI: 10.1126/Science.1082320 |
0.555 |
|
| 2003 |
Schwartz D, Decker CJ, Parker R. The enhancer of decapping proteins, Edc1p and Edc2p, bind RNA and stimulate the activity of the decapping enzyme Rna. 9: 239-251. PMID 12554867 DOI: 10.1261/Rna.2171203 |
0.496 |
|
| 2003 |
Steiger M, Carr-Schmid A, Schwartz DC, Kiledjian M, Parker R. Analysis of recombinant yeast decapping enzyme. Rna (New York, N.Y.). 9: 231-8. PMID 12554866 DOI: 10.1261/Rna.2151403 |
0.433 |
|
| 2002 |
Decker CJ, Parker R. mRNA decay enzymes: Decappers conserved between yeast and mammals Proceedings of the National Academy of Sciences of the United States of America. 99: 12512-12514. PMID 12271148 DOI: 10.1073/Pnas.212518099 |
0.544 |
|
| 2002 |
Steiger MA, Parker R. Analyzing mRNA decay in Saccharomyces cerevisiae. Methods in Enzymology. 351: 648-660. PMID 12073375 DOI: 10.1016/S0076-6879(02)51875-9 |
0.581 |
|
| 2002 |
van Hoof A, Parker R. Messenger RNA degradation: beginning at the end. Current Biology : Cb. 12: R285-7. PMID 11967169 DOI: 10.1016/S0960-9822(02)00802-3 |
0.534 |
|
| 2002 |
van Hoof A, Frischmeyer PA, Dietz HC, Parker R. Exosome-mediated recognition and degradation of mRNAs lacking a termination codon. Science (New York, N.Y.). 295: 2262-4. PMID 11910110 DOI: 10.1126/Science.1067272 |
0.618 |
|
| 2002 |
Frischmeyer PA, van Hoof A, O'Donnell K, Guerrerio AL, Parker R, Dietz HC. An mRNA surveillance mechanism that eliminates transcripts lacking termination codons. Science (New York, N.Y.). 295: 2258-61. PMID 11910109 DOI: 10.1126/Science.1067338 |
0.61 |
|
| 2002 |
Tucker M, Staples RR, Valencia-Sanchez MA, Muhlrad D, Parker R. Ccr4p is the catalytic subunit of a Ccr4p/Pop2p/Notp mRNA deadenylase complex in Saccharomyces cerevisiae. The Embo Journal. 21: 1427-36. PMID 11889048 DOI: 10.1093/Emboj/21.6.1427 |
0.54 |
|
| 2002 |
Wickens M, Bernstein DS, Kimble J, Parker R. A PUF family portrait: 3'UTR regulation as a way of life. Trends in Genetics : Tig. 18: 150-7. PMID 11858839 DOI: 10.1016/S0168-9525(01)02616-6 |
0.463 |
|
| 2001 |
Coller JM, Tucker M, Sheth U, Valencia-Sanchez MA, Parker R. The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes. Rna (New York, N.Y.). 7: 1717-27. PMID 11780629 DOI: 10.1017/S135583820101994X |
0.577 |
|
| 2001 |
Tharun S, Parker R. Targeting an mRNA for decapping: displacement of translation factors and association of the Lsm1p-7p complex on deadenylated yeast mRNAs. Molecular Cell. 8: 1075-83. PMID 11741542 DOI: 10.1016/S1097-2765(01)00395-1 |
0.56 |
|
| 2001 |
Dunckley T, Parker R. Yeast mRNA decapping enzyme. Methods in Enzymology. 342: 226-233. PMID 11586895 DOI: 10.1016/S0076-6879(01)42547-X |
0.578 |
|
| 2001 |
Hilleren P, McCarthy T, Rosbash M, Parker R, Jensen TH. Quality control of mRNA 3'-end processing is linked to the nuclear exosome. Nature. 413: 538-42. PMID 11586364 DOI: 10.1038/35097110 |
0.844 |
|
| 2001 |
Cao D, Parker R. Computational modeling of eukaryotic mRNA turnover Rna. 7: 1192-1212. PMID 11565744 DOI: 10.1017/S1355838201010330 |
0.564 |
|
| 2001 |
Hilleren P, Parker R. Defects in the mRNA export factors Rat7p, Gle1p, Mex67p, and Rat8p cause hyperadenylation during 3'-end formation of nascent transcripts. Rna. 7: 753-764. PMID 11350039 DOI: 10.1017/S1355838201010147 |
0.829 |
|
| 2001 |
Tucker M, Valencia-Sanchez MA, Staples RR, Chen J, Denis CL, Parker R. The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae. Cell. 104: 377-86. PMID 11239395 DOI: 10.1016/S0092-8674(01)00225-2 |
0.596 |
|
| 2001 |
Olivas W, Parker R. The Puf3 protein is a transcript-specific regulator of mRNA degradation in yeast. The Embo Journal. 19: 6602-11. PMID 11101532 DOI: 10.1093/Emboj/19.23.6602 |
0.587 |
|
| 2000 |
Van Hoof A, Staples RR, Baker RE, Parker R. Function of the Ski4p (Csl4p) and Ski7p proteins in 3'-to-5' degradation of mRNA Molecular and Cellular Biology. 20: 8230-8243. PMID 11027292 DOI: 10.1128/Mcb.20.21.8230-8243.2000 |
0.557 |
|
| 2000 |
Schwartz DC, Parker R. mRNA decapping in yeast requires dissociation of the cap binding protein, eukaryotic translation initiation factor 4E. Molecular and Cellular Biology. 20: 7933-42. PMID 11027264 DOI: 10.1128/Mcb.20.21.7933-7942.2000 |
0.527 |
|
| 2000 |
Tucker M, Parker R. Mechanisms And Control Of mRNA Decapping in Saccharomyces cerevisiae Annual Review of Biochemistry. 69: 571-595. PMID 10966469 DOI: 10.1146/Annurev.Biochem.69.1.571 |
0.578 |
|
| 2000 |
He W, Parker R. Functions of Lsm proteins in mRNA degradation and splicing. Current Opinion in Cell Biology. 12: 346-350. PMID 10801455 DOI: 10.1016/S0955-0674(00)00098-3 |
0.448 |
|
| 2000 |
Tharun S, He W, Mayes AE, Lennertz P, Beggs JD, Parker R. Yeast Sm-like proteins function in mRNA decapping and decay Nature. 404: 515-518. PMID 10761922 DOI: 10.1038/35006676 |
0.596 |
|
| 2000 |
Hoof Av, Lennertz P, Parker R. Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast. The Embo Journal. 19: 1357-1365. PMID 10716935 DOI: 10.1093/Emboj/19.6.1357 |
0.433 |
|
| 2000 |
Anderson JSJ, Parker R. Computational identification of cis-acting elements affecting post-transcriptional control of gene expression in Saccharomyces cerevisiae Nucleic Acids Research. 28: 1604-1617. PMID 10710427 DOI: 10.1093/Nar/28.7.1604 |
0.362 |
|
| 2000 |
Hoof Av, Lennertz P, Parker R. Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs. Molecular and Cellular Biology. 20: 441-452. PMID 10611222 DOI: 10.1128/Mcb.20.2.441-452.2000 |
0.506 |
|
| 2000 |
Schwartz DC, Parker R. 28 Interaction of mRNA Translation and mRNA Degradation in Saccharomyces cerevisiae Cold Spring Harbor Monograph Archive. 39: 807-825. DOI: 10.1101/087969618.39.807 |
0.566 |
|
| 1999 |
Hilleren P, Parker R. Mechanisms of mRNA surveillance in eukaryotes. Annual Review of Genetics. 33: 229-260. PMID 10690409 DOI: 10.1146/Annurev.Genet.33.1.229 |
0.832 |
|
| 1999 |
Muhlrad D, Parker R. Aberrant mRNAs with extended 3' UTRs are substrates for rapid degradation by mRNA surveillance. Rna. 5: 1299-1307. PMID 10573121 DOI: 10.1017/S1355838299990829 |
0.591 |
|
| 1999 |
Hoof Av, Parker R. The exosome: a proteasome for RNA? Cell. 99: 347-350. PMID 10571176 DOI: 10.1016/S0092-8674(00)81520-2 |
0.376 |
|
| 1999 |
Muhlrad D, Parker R. Recognition of yeast mRNAs as "nonsense containing" leads to both inhibition of mRNA translation and mRNA degradation: implications for the control of mRNA decapping. Molecular Biology of the Cell. 10: 3971-3978. PMID 10564284 DOI: 10.1091/Mbc.10.11.3971 |
0.597 |
|
| 1999 |
Dunckley T, Parker R. The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif. The Embo Journal. 18: 5411-5422. PMID 10508173 DOI: 10.1093/Emboj/18.19.5411 |
0.535 |
|
| 1999 |
Schwartz DC, Parker R. Mutations in translation initiation factors lead to increased rates of deadenylation and decapping of mRNAs in Saccharomyces cerevisiae. Molecular and Cellular Biology. 19: 5247-56. PMID 10409716 DOI: 10.1128/Mcb.19.8.5247 |
0.547 |
|
| 1999 |
Hilleren P, Parker R. mRNA surveillance in eukaryotes: Kinetic proofreading of proper translation termination as assessed by mRNP domain organization? Rna. 5: 711-719. PMID 10376871 DOI: 10.1017/S1355838299990519 |
0.839 |
|
| 1999 |
LaGRANDEUR T, Parker R. The cis acting sequences responsible for the differential decay of the unstable MFA2 and stable PGK1 transcripts in yeast include the context of the translational start codon. Rna. 5: 420-433. PMID 10094310 DOI: 10.1017/S1355838299981748 |
0.576 |
|
| 1999 |
He W, Parker R. Analysis of mRNA decay pathways in Saccharomyces cerevisiae. Methods. 17: 3-10. PMID 10075877 DOI: 10.1006/Meth.1998.0701 |
0.569 |
|
| 1999 |
Tharun S, Parker R. 6.13 – Turnover of mRNA in Eukaryotic Cells Rna. 6: 205-216. DOI: 10.1016/B978-0-08-091283-7.00149-1 |
0.497 |
|
| 1998 |
Anderson JS, Parker RP. The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex. The Embo Journal. 17: 1497-506. PMID 9482746 DOI: 10.1093/Emboj/17.5.1497 |
0.597 |
|
| 1998 |
LaGrandeur TE, Parker R. Isolation and characterization of Dcp1p, the yeast mRNA decapping enzyme The Embo Journal. 17: 1487-1496. PMID 9482745 DOI: 10.1093/Emboj/17.5.1487 |
0.534 |
|
| 1998 |
Olivas WM, Muhlrad D, Parker R. Analysis of the yeast genome: identification of new non-coding and small ORF-containing RNAs. Nucleic Acids Research. 25: 4619-25. PMID 9358174 DOI: 10.1093/Nar/25.22.4619 |
0.432 |
|
| 1996 |
LaGrandeur TE, Parker R. mRNA decapping activities and their biological roles Biochimie. 78: 1049-1055. PMID 9150884 DOI: 10.1016/S0300-9084(97)86729-6 |
0.516 |
|
| 1996 |
Caponigro G, Parker R. mRNA Turnover in Yeast Promoted by the MATα1 Instability Element Nucleic Acids Research. 24: 4304-4312. PMID 8932387 DOI: 10.1093/Nar/24.21.4304 |
0.569 |
|
| 1996 |
Hatfield L, Beelman CA, Stevens A, Parker R. Mutations in trans-acting factors affecting mRNA decapping in Saccharomyces cerevisiae. Molecular and Cellular Biology. 16: 5830-8. PMID 8816497 DOI: 10.1128/Mcb.16.10.5830 |
0.523 |
|
| 1996 |
Anderson JS, Parker R. RNA turnover: the helicase story unwinds. Current Biology : Cb. 6: 780-2. PMID 8805288 DOI: 10.1016/S0960-9822(02)00593-6 |
0.393 |
|
| 1996 |
Beelman CA, Stevens A, Caponigro G, LaGrandeur TE, Hatfield L, Fortner DM, Parker R. An essential component of the decapping enzyme required for normal rates of mRNA turnover. Nature. 382: 642-646. PMID 8757137 DOI: 10.1038/382642A0 |
0.601 |
|
| 1995 |
Mandart E, Parker R. Effects of mutations in the Saccharomyces cerevisiae RNA14, RNA15, and PAP1 genes on polyadenylation in vivo Molecular and Cellular Biology. 15: 6979-6986. PMID 8524265 DOI: 10.1128/Mcb.15.12.6979 |
0.482 |
|
| 1995 |
Muhlrad D, Decker CJ, Parker R. Turnover mechanisms of the stable yeast PGK1 mRNA Molecular and Cellular Biology. 15: 2145-2156. PMID 7891709 DOI: 10.1128/Mcb.15.4.2145 |
0.6 |
|
| 1995 |
Beelman CA, Parker R. Degradation of mRNA in eukaryotes. Cell. 81: 179-183. PMID 7736570 DOI: 10.1016/0092-8674(95)90326-7 |
0.574 |
|
| 1995 |
Decker CJ, Parker R. Diversity of cytoplasmic functions for the 3′ untranslated region of eukaryotic transcripts Current Opinion in Cell Biology. 7: 386-392. PMID 7662369 DOI: 10.1016/0955-0674(95)80094-8 |
0.539 |
|
| 1995 |
Caponigro G, Parker R. Multiple functions for the poly(A)-binding protein in mRNA decapping and deadenylation in yeast. Genes & Development. 9: 2421-2432. PMID 7557393 DOI: 10.1101/Gad.9.19.2421 |
0.584 |
|
| 1994 |
Muhlrad D, Parker R. Premature translational termination triggers mRNA decapping Nature. 370: 578-581. PMID 8052314 DOI: 10.1038/370578A0 |
0.606 |
|
| 1994 |
Decker CJ, Parker R. Mechanisms of mRNA degradation in eukaryotes Trends in Biochemical Sciences. 19: 336-340. PMID 7940679 DOI: 10.1016/0968-0004(94)90073-6 |
0.479 |
|
| 1994 |
Muhlrad D, Decker CJ, Parker R. Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5' → 3' digestion of the transcript Genes and Development. 8: 855-866. PMID 7926773 DOI: 10.1101/Gad.8.7.855 |
0.6 |
|
| 1993 |
Parker R, Siliciano PG. Evidence for an essential non-Watson-Crick interaction between the first and last nucleotides of a nuclear pre-mRNA intron. Nature. 361: 660-662. PMID 8437627 DOI: 10.1038/361660A0 |
0.825 |
|
| 1993 |
Decker CJ, Parker R. A turnover pathway for both stable and unstable mRNAs in yeast: Evidence for a requirement for deadenylation Genes and Development. 7: 1632-1643. PMID 8393418 DOI: 10.1101/Gad.7.8.1632 |
0.597 |
|
| 1993 |
Caponigro G, Muhlrad D, Parker R. A small segment of the MAT alpha 1 transcript promotes mRNA decay in Saccharomyces cerevisiae: a stimulatory role for rare codons. Molecular and Cellular Biology. 13: 5141-5148. PMID 8355674 DOI: 10.1128/Mcb.13.9.5141 |
0.435 |
|
| 1992 |
Heaton B, Decker C, Muhlrad D, Donahue J, Jacobson A, Parker R. Analysis of chimeric mRNAs derived from the STE3 mRNA identifies multiple regions within yeast mRNAs that modulate mRNA decay Nucleic Acids Research. 20: 5365-5373. PMID 1437553 DOI: 10.1093/Nar/20.20.5365 |
0.721 |
|
| 1992 |
Muhlrad D, Parker R. Mutations affecting stability and deadenylation of the yeast MFA2 transcript. Genes & Development. 6: 2100-2111. PMID 1427074 DOI: 10.1101/Gad.6.11.2100 |
0.544 |
|
| 1991 |
Parker R, Herrick D, Peltz SW, Jacobson A. Measurement of mRNA decay rates in Saccharomyces cerevisiae. Methods in Enzymology. 194: 415-23. PMID 2005800 DOI: 10.1016/0076-6879(91)94032-8 |
0.834 |
|
| 1990 |
Herrick D, Parker R, Jacobson A. Identification and comparison of stable and unstable mRNAs in Saccharomyces cerevisiae. Molecular and Cellular Biology. 10: 2269-84. PMID 2183028 DOI: 10.1128/Mcb.10.5.2269 |
0.835 |
|
| 1990 |
Parker R, Jacobson A. Translation and a 42-nucleotide segment within the coding region of the mRNA encoded by the MAT alpha 1 gene are involved in promoting rapid mRNA decay in yeast Proceedings of the National Academy of Sciences of the United States of America. 87: 2780-2784. PMID 2181450 DOI: 10.1073/Pnas.87.7.2780 |
0.655 |
|
| 1989 |
Parker R. Genetic methods for identification and characterization of RNA-RNA and RNA-protein interactions Methods in Enzymology. 180: 510-517. PMID 2482431 DOI: 10.1016/0076-6879(89)80120-X |
0.412 |
|
| 1988 |
Parker R, Simmons T, Shuster EO, Siliciano PG, Guthrie C. Genetic analysis of small nuclear RNAs in Saccharomyces cerevisiae: viable sextuple mutant. Molecular and Cellular Biology. 8: 3150-9. PMID 2905424 DOI: 10.1128/Mcb.8.8.3150 |
0.811 |
|
| 1988 |
Ruohola H, Baker SM, Parker R, Platt T. Orientation-dependent function of a short CYC1 DNA fragment in directing mRNA 3' end formation in yeast Proceedings of the National Academy of Sciences of the United States of America. 85: 5041-5045. PMID 2839828 DOI: 10.1073/Pnas.85.14.5041 |
0.519 |
|
| 1987 |
Parker R, Siliciano PG, Guthrie C. Recognition of the TACTAAC box during mRNA splicing in yeast involves base pairing to the U2-like snRNA. Cell. 49: 229-39. PMID 3552247 DOI: 10.1016/0092-8674(87)90564-2 |
0.805 |
|
| 1987 |
Couto JR, Tamm J, Parker R, Guthrie C. A trans-acting suppressor restores splicing of a yeast intron with a branch point mutation. Genes & Development. 1: 445-55. PMID 2890553 DOI: 10.1101/Gad.1.5.445 |
0.655 |
|
| 1986 |
Cellini A, Parker R, McMahon J, Guthrie C, Rossi J. Activation of a cryptic TACTAAC box in the Saccharomyces cerevisiae actin intron. Molecular and Cellular Biology. 6: 1571-8. PMID 3023896 DOI: 10.1128/Mcb.6.5.1571 |
0.571 |
|
| 1986 |
Vijayraghavan U, Parker R, Tamm J, Iimura Y, Rossi J, Abelson J, Guthrie C. Mutations in conserved intron sequences affect multiple steps in the yeast splicing pathway, particularly assembly of the spliceosome. The Embo Journal. 5: 1683-95. PMID 3017708 |
0.585 |
|
| 1986 |
Vijayraghavan U, Parker R, Tamm J, Iimura Y, Rossi J, Abelson J, Guthrie C. Mutations in conserved intron sequences affect multiple steps in the yeast splicing pathway, particularly assembly of the spliceosome. The Embo Journal. 5: 1683-1695. DOI: 10.1002/J.1460-2075.1986.Tb04412.X |
0.455 |
|
| 1985 |
Parker R, Guthrie C. A point mutation in the conserved hexanucleotide at a yeast 5' splice junction uncouples recognition, cleavage, and ligation. Cell. 41: 107-18. PMID 2986840 DOI: 10.1016/0092-8674(85)90065-0 |
0.601 |
|
| Show low-probability matches. |
