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Joaquin Dopazo - Publications

Affiliations: 
CNIO (Spanish National Cancer Research Center) 
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Year Citation  Score
2020 Çubuk C, Can FE, Peña-Chilet M, Dopazo J. Mechanistic Models of Signaling Pathways Reveal the Drug Action Mechanisms behind Gender-Specific Gene Expression for Cancer Treatments. Cells. 9. PMID 32610626 DOI: 10.3390/Cells9071579  0.35
2020 Wang H, Azuaje F, Bodenreider O, Dopazo J. Gene Expression Correlation and Gene Ontology-Based Similarity: An Assessment of Quantitative Relationships. Proceedings of the ... Ieee Symposium On Computational Intelligence in Bioinformatics and Computational Biology : Cibcb. Ieee Symposium On Computational Intelligence in Bioinformatics and Computational Biology. 2004: 25-31. PMID 25664345 DOI: 10.1109/CIBCB.2004.1393927  0.317
2019 Peña-Chilet M, Esteban-Medina M, Falco MM, Rian K, Hidalgo MR, Loucera C, Dopazo J. Using mechanistic models for the clinical interpretation of complex genomic variation. Scientific Reports. 9: 18937. PMID 31831811 DOI: 10.1038/S41598-019-55454-7  0.408
2019 Esteban-Medina M, Peña-Chilet M, Loucera C, Dopazo J. Exploring the druggable space around the Fanconi anemia pathway using machine learning and mechanistic models. Bmc Bioinformatics. 20: 370. PMID 31266445 DOI: 10.1186/S12859-019-2969-0  0.383
2019 Amadoz A, Hidalgo MR, Çubuk C, Carbonell-Caballero J, Dopazo J. A comparison of mechanistic signaling pathway activity analysis methods. Briefings in Bioinformatics. 20: 1655-1668. PMID 29868818 DOI: 10.1093/Bib/Bby040  0.34
2018 Ibáñez M, Carbonell-Caballero J, Such E, García-Alonso L, Liquori A, López-Pavía M, Llop M, Alonso C, Barragán E, Gómez-Seguí I, Neef A, Hervás D, Montesinos P, Sanz G, Sanz MA, ... Dopazo J, et al. The modular network structure of the mutational landscape of Acute Myeloid Leukemia. Plos One. 13: e0202926. PMID 30303964 DOI: 10.1371/Journal.Pone.0202926  0.355
2018 Cubuk C, Hidalgo MR, Amadoz A, Pujana MA, Mateo F, Herranz C, Carbonell-Caballero J, Dopazo J. Gene Expression Integration into Pathway Modules Reveals a Pan-Cancer Metabolic Landscape. Cancer Research. 78: 6059-6072. PMID 30135189 DOI: 10.1158/0008-5472.Can-17-2705  0.314
2018 Ferreira PG, Muñoz-Aguirre M, Reverter F, Sá Godinho CP, Sousa A, Amadoz A, Sodaei R, Hidalgo MR, Pervouchine D, Carbonell-Caballero J, Nurtdinov R, Breschi A, Amador R, Oliveira P, Çubuk C, ... ... Dopazo J, et al. The effects of death and post-mortem cold ischemia on human tissue transcriptomes. Nature Communications. 9: 490. PMID 29440659 DOI: 10.1038/S41467-017-02772-X  0.344
2018 Wu GA, Terol J, Ibanez V, López-García A, Pérez-Román E, Borredá C, Domingo C, Tadeo FR, Carbonell-Caballero J, Alonso R, Curk F, Du D, Ollitrault P, Roose ML, Dopazo J, et al. Genomics of the origin and evolution of Citrus. Nature. PMID 29414943 DOI: 10.1038/Nature25447  0.312
2017 Dopazo J, Erten C. Graph-theoretical comparison of normal and tumor networks in identifying BRCA genes. Bmc Systems Biology. 11: 110. PMID 29166896 DOI: 10.1186/S12918-017-0495-0  0.376
2017 Carbonell-Caballero J, Amadoz A, Alonso R, Hidalgo MR, Çubuk C, Conesa D, López-Quílez A, Dopazo J. Reference genome assessment from a population scale perspective: an accurate profile of variability and noise. Bioinformatics (Oxford, England). 33: 3511-3517. PMID 28961772 DOI: 10.1093/Bioinformatics/Btx482  0.305
2017 Juanes JM, Gallego A, Tárraga J, Chaves FJ, Marín-Garcia P, Medina I, Arnau V, Dopazo J. VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy. Bmc Bioinformatics. 18: 421. PMID 28931371 DOI: 10.1186/S12859-017-1837-Z  0.323
2017 Moschen S, Di Rienzo JA, Higgins J, Tohge T, Watanabe M, González S, Rivarola M, García-García F, Dopazo J, Hopp HE, Hoefgen R, Fernie AR, Paniego N, Fernández P, Heinz RA. Integration of transcriptomic and metabolic data reveals hub transcription factors involved in drought stress response in sunflower (Helianthus annuus L.). Plant Molecular Biology. PMID 28639116 DOI: 10.1007/S11103-017-0625-5  0.301
2017 Lopez J, Coll J, Haimel M, Kandasamy S, Tarraga J, Furio-Tari P, Bari W, Bleda M, Rueda A, Gräf S, Rendon A, Dopazo J, Medina I. HGVA: the Human Genome Variation Archive. Nucleic Acids Research. PMID 28535294 DOI: 10.1093/Nar/Gkx445  0.338
2017 Gui H, Schriemer D, Cheng WW, Chauhan RK, Antiňolo G, Berrios C, Bleda M, Brooks AS, Brouwer RW, Burns AJ, Cherny SS, Dopazo J, Eggen BJ, Griseri P, Jalloh B, et al. Whole exome sequencing coupled with unbiased functional analysis reveals new Hirschsprung disease genes. Genome Biology. 18: 48. PMID 28274275 DOI: 10.1186/S13059-017-1174-6  0.319
2017 Gonzalez S, Clavijo B, Rivarola M, Moreno P, Fernandez P, Dopazo J, Paniego N. ATGC transcriptomics: a web-based application to integrate, explore and analyze de novo transcriptomic data. Bmc Bioinformatics. 18: 121. PMID 28222698 DOI: 10.1186/S12859-017-1494-2  0.369
2017 Hidalgo MR, Cubuk C, Amadoz A, Salavert F, Carbonell-Caballero J, Dopazo J. High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes. Oncotarget. 8: 5160-5178. PMID 28042959 DOI: 10.18632/Oncotarget.14107  0.356
2017 Puig-Butille JA, Gimenez-Xavier P, Visconti A, Nsengimana J, Garcia-García F, Tell-Marti G, Escamez MJ, Newton-Bishop J, Bataille V, Del Río M, Dopazo J, Falchi M, Puig S. Genomic expression differences between cutaneous cells from red hair color individuals and black hair color individuals based on bioinformatic analysis. Oncotarget. 8: 11589-11599. PMID 28030792 DOI: 10.18632/Oncotarget.14140  0.405
2016 Falco MM, Bleda M, Carbonell-Caballero J, Dopazo J. The pan-cancer pathological regulatory landscape. Scientific Reports. 6: 39709. PMID 28000771 DOI: 10.1038/Srep39709  0.303
2016 Corton M, Avila-Fernández A, Campello L, Sánchez M, Benavides B, López-Molina MI, Fernández-Sánchez L, Sánchez-Alcudia R, da Silva LR, Reyes N, Martín-Garrido E, Zurita O, Fernández-San José P, Pérez-Carro R, García-García F, ... Dopazo J, et al. Identification of the Photoreceptor Transcriptional Co-Repressor SAMD11 as Novel Cause of Autosomal Recessive Retinitis Pigmentosa. Scientific Reports. 6: 35370. PMID 27734943 DOI: 10.1038/Srep35370  0.302
2016 Lucariello M, Vidal E, Vidal S, Saez M, Roa L, Huertas D, Pineda M, Dalfó E, Dopazo J, Jurado P, Armstrong J, Esteller M. Whole exome sequencing of Rett syndrome-like patients reveals the mutational diversity of the clinical phenotype. Human Genetics. PMID 27541642 DOI: 10.1007/S00439-016-1721-3  0.334
2016 Lagarde J, Uszczynska-Ratajczak B, Santoyo-Lopez J, Gonzalez JM, Tapanari E, Mudge JM, Steward CA, Wilming L, Tanzer A, Howald C, Chrast J, Vela-Boza A, Rueda A, Lopez-Domingo FJ, Dopazo J, et al. Extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing (RACE-Seq). Nature Communications. 7: 12339. PMID 27531712 DOI: 10.1038/Ncomms12339  0.368
2016 Garcia-Garcia F, Panadero J, Dopazo J, Montaner D. Integrated Gene Set Analysis for microRNA Studies. Bioinformatics (Oxford, England). PMID 27324197 DOI: 10.1093/Bioinformatics/Btw334  0.346
2016 Salavert F, Hidago MR, Amadoz A, Çubuk C, Medina I, Crespo D, Carbonell-Caballero J, Dopazo J. Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models. Nucleic Acids Research. PMID 27137885 DOI: 10.1093/Nar/Gkw369  0.315
2016 Bravo-Gil N, Méndez-Vidal C, Romero-Pérez L, González-del Pozo M, Rodríguez-de la Rúa E, Dopazo J, Borrego S, Antiñolo G. Improving the management of Inherited Retinal Dystrophies by targeted sequencing of a population-specific gene panel. Scientific Reports. 6: 23910. PMID 27032803 DOI: 10.1038/Srep23910  0.333
2016 Ibáñez M, Carbonell-Caballero J, García-Alonso L, Such E, Jiménez-Almazán J, Vidal E, Barragán E, López-Pavía M, LLop M, Martín I, Gómez-Seguí I, Montesinos P, Sanz MA, Dopazo J, Cervera J. The Mutational Landscape of Acute Promyelocytic Leukemia Reveals an Interacting Network of Co-Occurrences and Recurrent Mutations. Plos One. 11: e0148346. PMID 26886259 DOI: 10.1371/Journal.Pone.0148346  0.363
2016 Lupo V, García-García F, Sancho P, Tello C, García-Romero M, Villarreal L, Alberti A, Sivera R, Dopazo J, Pascual-Pascual SI, Márquez-Infante C, Casasnovas C, Sevilla T, Espinós C. Assessment of Targeted Next-Generation Sequencing as a Tool for the Diagnosis of Charcot-Marie-Tooth Disease and Hereditary Motor Neuropathy. The Journal of Molecular Diagnostics : Jmd. 18: 225-34. PMID 26752306 DOI: 10.1016/J.Jmoldx.2015.10.005  0.348
2016 Alic AS, Ruzafa D, Dopazo J, Blanquer I. Objective review ofde novostand-alone error correction methods for NGS data Wiley Interdisciplinary Reviews: Computational Molecular Science. 6: 111-146. DOI: 10.1002/Wcms.1239  0.31
2015 Amadoz A, Sebastian-Leon P, Vidal E, Salavert F, Dopazo J. Using activation status of signaling pathways as mechanism-based biomarkers to predict drug sensitivity. Scientific Reports. 5: 18494. PMID 26678097 DOI: 10.1038/Srep18494  0.307
2015 Luzón-Toro B, Gui H, Ruiz-Ferrer M, Sze-Man Tang C, Fernández RM, Sham PC, Torroglosa A, Kwong-Hang Tam P, Espino-Paisán L, Cherny SS, Bleda M, Enguix-Riego Mdel V, Dopazo J, Antiñolo G, García-Barceló MM, et al. Exome sequencing reveals a high genetic heterogeneity on familial Hirschsprung disease. Scientific Reports. 5: 16473. PMID 26559152 DOI: 10.1038/Srep16473  0.392
2015 Gil-Ibañez P, García-García F, Dopazo J, Bernal J, Morte B. Global Transcriptome Analysis of Primary Cerebrocortical Cells: Identification of Genes Regulated by Triiodothyronine in Specific Cell Types. Cerebral Cortex (New York, N.Y. : 1991). PMID 26534908 DOI: 10.1093/Cercor/Bhv273  0.342
2015 Rodríguez-de la Rosa L, Sánchez-Calderón H, Contreras J, Murillo-Cuesta S, Falagan S, Avendaño C, Dopazo J, Varela-Nieto I, Milo M. Comparative gene expression study of the vestibular organ of the Igf1 deficient mouse using whole-transcript arrays. Hearing Research. PMID 26341476 DOI: 10.1016/J.Heares.2015.08.016  0.324
2015 Fonseca RF, de Carvalho FM, Poletta FA, Montaner D, Dopazo J, Mereb JC, Moreira MA, Seuanez HN, Vieira AR, Castilla EE, Orioli IM. Family-based genome-wide association study in Patagonia confirms the association of the DMD locus and cleft lip and palate. European Journal of Oral Sciences. PMID 26331285 DOI: 10.1111/Eos.12212  0.36
2015 Moschen S, Bengoa Luoni S, Di Rienzo JA, Caro MD, Tohge T, Watanabe M, Hollmann J, González S, Rivarola M, García-García F, Dopazo J, Hopp HE, Hoefgen R, Fernie AR, Paniego N, et al. Integrating transcriptomic and metabolomic analysis to understand natural leaf senescence in sunflower. Plant Biotechnology Journal. PMID 26132509 DOI: 10.1111/Pbi.12422  0.305
2015 Alvarez-Mora MI, Rodriguez-Revenga L, Madrigal I, Garcia-Garcia F, Duran M, Dopazo J, Estivill X, Milà M. Deregulation of key signaling pathways involved in oocyte maturation in FMR1 premutation carriers with Fragile X-associated primary ovarian insufficiency. Gene. 571: 52-7. PMID 26095811 DOI: 10.1016/J.Gene.2015.06.039  0.349
2015 Alonso R, Salavert F, Garcia-Garcia F, Carbonell-Caballero J, Bleda M, Garcia-Alonso L, Sanchis-Juan A, Perez-Gil D, Marin-Garcia P, Sanchez R, Cubuk C, Hidalgo MR, Amadoz A, Hernansaiz-Ballesteros RD, Alemán A, ... ... Dopazo J, et al. Babelomics 5.0: functional interpretation for new generations of genomic data. Nucleic Acids Research. 43: W117-21. PMID 25897133 DOI: 10.1093/Nar/Gkv384  0.396
2015 Hernansaiz-Ballesteros RD, Salavert F, Sebastián-León P, Alemán A, Medina I, Dopazo J. Assessing the impact of mutations found in next generation sequencing data over human signaling pathways. Nucleic Acids Research. 43: W270-5. PMID 25883139 DOI: 10.1093/Nar/Gkv349  0.421
2015 Avila-Fernandez A, Perez-Carro R, Corton M, Lopez-Molina MI, Campello L, Garanto A, Fernandez-Sanchez L, Duijkers L, Lopez-Martinez MA, Riveiro-Alvarez R, Da Silva LR, Sanchez-Alcudia R, Martin-Garrido E, Reyes N, Garcia-Garcia F, ... Dopazo J, et al. Whole-exome sequencing reveals ZNF408 as a new gene associated with autosomal recessive retinitis pigmentosa with vitreal alterations. Human Molecular Genetics. 24: 4037-48. PMID 25882705 DOI: 10.1093/Hmg/Ddv140  0.332
2015 Carbonell-Caballero J, Alonso R, Ibañez V, Terol J, Talon M, Dopazo J. A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the Genus Citrus. Molecular Biology and Evolution. 32: 2015-35. PMID 25873589 DOI: 10.1093/Molbev/Msv082  0.358
2015 Calzada D, Aguerri M, Baos S, Montaner D, Mata M, Dopazo J, Quiralte J, Florido F, Lahoz C, Cárdaba B. Therapeutic targets for olive pollen allergy defined by gene markers modulated by Ole e 1-derived peptides. Molecular Immunology. 64: 252-61. PMID 25553522 DOI: 10.1016/J.Molimm.2014.12.002  0.394
2014 Iglesias JM, Leis O, Pérez Ruiz E, Gumuzio Barrie J, Garcia-Garcia F, Aduriz A, Beloqui I, Hernandez-Garcia S, Lopez-Mato MP, Dopazo J, Pandiella A, Menendez JA, Martin AG. The Activation of the Sox2 RR2 Pluripotency Transcriptional Reporter in Human Breast Cancer Cell Lines is Dynamic and Labels Cells with Higher Tumorigenic Potential. Frontiers in Oncology. 4: 308. PMID 25414831 DOI: 10.3389/Fonc.2014.00308  0.302
2014 Sebastian-Leon P, Vidal E, Minguez P, Conesa A, Tarazona S, Amadoz A, Armero C, Salavert F, Vidal-Puig A, Montaner D, Dopazo J. Understanding disease mechanisms with models of signaling pathway activities. Bmc Systems Biology. 8: 121. PMID 25344409 DOI: 10.1186/S12918-014-0121-3  0.311
2014 Garcia-Alonso L, Jiménez-Almazán J, Carbonell-Caballero J, Vela-Boza A, Santoyo-López J, Antiñolo G, Dopazo J. The role of the interactome in the maintenance of deleterious variability in human populations. Molecular Systems Biology. 10: 752. PMID 25261458 DOI: 10.15252/Msb.20145222  0.364
2014 Munro SA, Lund SP, Pine PS, Binder H, Clevert DA, Conesa A, Dopazo J, Fasold M, Hochreiter S, Hong H, Jafari N, Kreil DP, ?abaj PP, Li S, Liao Y, et al. Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures. Nature Communications. 5: 5125. PMID 25254650 DOI: 10.1038/Ncomms6125  0.329
2014 Ponzoni I, Nueda M, Tarazona S, Götz S, Montaner D, Dussaut J, Dopazo J, Conesa A. Pathway network inference from gene expression data. Bmc Systems Biology. 8: S7. PMID 25032889 DOI: 10.1186/1752-0509-8-S2-S7  0.432
2014 Calpena E, Martínez-Rubio D, Arpa J, García-Peñas JJ, Montaner D, Dopazo J, Palau F, Espinós C. A novel locus for a hereditary recurrent neuropathy on chromosome 21q21. Neuromuscular Disorders. 24: 660-665. PMID 24878226 DOI: 10.1016/J.Nmd.2014.04.004  0.36
2014 Alemán A, Garcia-Garcia F, Medina I, Dopazo J. A web tool for the design and management of panels of genes for targeted enrichment and massive sequencing for clinical applications. Nucleic Acids Research. 42: W83-7. PMID 24861626 DOI: 10.1093/Nar/Gku472  0.353
2014 Alemán A, Garcia-Garcia F, Salavert F, Medina I, Dopazo J. A web-based interactive framework to assist in the prioritization of disease candidate genes in whole-exome sequencing studies. Nucleic Acids Research. 42: W88-93. PMID 24803668 DOI: 10.1093/Nar/Gku407  0.351
2014 Puig-Butille JA, Escámez MJ, Garcia-Garcia F, Tell-Marti G, Fabra À, Martínez-Santamaría L, Badenas C, Aguilera P, Pevida M, Dopazo J, del Río M, Puig S. Capturing the biological impact of CDKN2A and MC1R genes as an early predisposing event in melanoma and non melanoma skin cancer. Oncotarget. 5: 1439-51. PMID 24742402 DOI: 10.18632/Oncotarget.1444  0.375
2014 González-Del Pozo M, Méndez-Vidal C, Santoyo-Lopez J, Vela-Boza A, Bravo-Gil N, Rueda A, García-Alonso L, Vázquez-Marouschek C, Dopazo J, Borrego S, Antiñolo G. Deciphering intrafamilial phenotypic variability by exome sequencing in a Bardet-Biedl family. Molecular Genetics & Genomic Medicine. 2: 124-33. PMID 24689075 DOI: 10.1002/Mgg3.50  0.346
2014 López-Domingo FJ, Florido JP, Rueda A, Dopazo J, Santoyo-Lopez J. ngsCAT: a tool to assess the efficiency of targeted enrichment sequencing. Bioinformatics (Oxford, England). 30: 1767-8. PMID 24578402 DOI: 10.1093/Bioinformatics/Btu108  0.318
2014 Larriba E, Jaime MD, Carbonell-Caballero J, Conesa A, Dopazo J, Nislow C, Martín-Nieto J, Lopez-Llorca LV. Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia. Fungal Genetics and Biology : Fg & B. 65: 69-80. PMID 24530791 DOI: 10.1016/J.Fgb.2014.02.002  0.379
2014 de Castro-Miró M, Pomares E, Lorés-Motta L, Tonda R, Dopazo J, Marfany G, Gonzàlez-Duarte R. Combined genetic and high-throughput strategies for molecular diagnosis of inherited retinal dystrophies. Plos One. 9: e88410. PMID 24516651 DOI: 10.1371/Journal.Pone.0088410  0.355
2014 García-García F, Alemán A, Medina I, Dopazo J. TEAM: a web tool for the design, analysis and management of panels of genes for clinical applications F1000research. 5. DOI: 10.7490/F1000Research.1097156.1  0.314
2014 García-García F, Alemán A, Dopazo J. BIER platform: analyzing and understanding genomic and biomedical data F1000research. 5. DOI: 10.7490/F1000Research.1096997.1  0.325
2014 Alemán A, García-García F, Salavert F, Medina I, Dopazo J. BiERapp: a web-based interactive framework for the prioritization of disease candidate genes in whole exome sequencing studies F1000research. 5. DOI: 10.7490/F1000Research.1096994.1  0.37
2013 Fernández RM, Bleda M, Luzón-Toro B, García-Alonso L, Arnold S, Sribudiani Y, Besmond C, Lantieri F, Doan B, Ceccherini I, Lyonnet S, Hofstra RM, Chakravarti A, Antiñolo G, Dopazo J, et al. Pathways systematically associated to Hirschsprung's disease. Orphanet Journal of Rare Diseases. 8: 187. PMID 24289864 DOI: 10.1186/1750-1172-8-187  0.369
2013 Gonzalez-Tendero A, Torre I, Garcia-Canadilla P, Crispi F, García-García F, Dopazo J, Bijnens B, Gratacós E. Intrauterine growth restriction is associated with cardiac ultrastructural and gene expression changes related to the energetic metabolism in a rabbit model. American Journal of Physiology. Heart and Circulatory Physiology. 305: H1752-60. PMID 24097427 DOI: 10.1152/Ajpheart.00514.2013  0.317
2013 Sebastián-León P, Carbonell J, Salavert F, Sanchez R, Medina I, Dopazo J. Inferring the functional effect of gene expression changes in signaling pathways. Nucleic Acids Research. 41: W213-7. PMID 23748960 DOI: 10.1093/Nar/Gkt451  0.372
2013 Medina I, Salavert F, Sanchez R, de Maria A, Alonso R, Escobar P, Bleda M, Dopazo J. Genome Maps, a new generation genome browser. Nucleic Acids Research. 41: W41-6. PMID 23748955 DOI: 10.1093/Nar/Gkt530  0.336
2013 Tort F, García-Silva MT, Ferrer-Cortès X, Navarro-Sastre A, Garcia-Villoria J, Coll MJ, Vidal E, Jiménez-Almazán J, Dopazo J, Briones P, Elpeleg O, Ribes A. Exome sequencing identifies a new mutation in SERAC1 in a patient with 3-methylglutaconic aciduria. Molecular Genetics and Metabolism. 110: 73-7. PMID 23707711 DOI: 10.1016/J.Ymgme.2013.04.021  0.3
2013 Galan A, Diaz-Gimeno P, Poo ME, Valbuena D, Sanchez E, Ruiz V, Dopazo J, Montaner D, Conesa A, Simon C. Defining the genomic signature of totipotency and pluripotency during early human development. Plos One. 8: e62135. PMID 23614026 DOI: 10.1371/Journal.Pone.0062135  0.378
2013 Silbiger VN, Luchessi AD, Hirata RD, Lima-Neto LG, Cavichioli D, Carracedo A, Brión M, Dopazo J, García-García F, dos Santos ES, Ramos RF, Sampaio MF, Armaganijan D, Sousa AG, Hirata MH. Novel genes detected by transcriptional profiling from whole-blood cells in patients with early onset of acute coronary syndrome. Clinica Chimica Acta; International Journal of Clinical Chemistry. 421: 184-90. PMID 23535507 DOI: 10.1016/J.Cca.2013.03.011  0.335
2013 Ariño J, Casamayor A, Pérez JP, Pedrola L, Álvarez-Tejado M, Marbà M, Santoyo J, Dopazo J. Assessing differential expression measurements by highly parallel pyrosequencing and DNA microarrays: a comparative study. Omics : a Journal of Integrative Biology. 17: 53-9. PMID 21919703 DOI: 10.1089/Omi.2011.0065  0.387
2013 Rueda A, López FJ, Pérez J, Arce P, Cruz LM, Carbonell J, Jiménez-Almazán J, Vidal E, Antiñolo G, Dopazo J, Santoyo J. Analysis pipeline for the detection of mutations causative of rare diseases on whole exome sequencing data Embnet.Journal. 19: 79. DOI: 10.14806/Ej.19.A.647  0.336
2012 Carcel-Trullols J, Aguilar-Gallardo C, Garcia-Alcalde F, Pardo-Cea MA, Dopazo J, Conesa A, Simón C. Transdifferentiation of MALME-3M and MCF-7 Cells toward Adipocyte-like Cells is Dependent on Clathrin-mediated Endocytosis. Springerplus. 1: 44. PMID 23961369 DOI: 10.1186/2193-1801-1-44  0.336
2012 Fernández RM, Bleda M, Núñez-Torres R, Medina I, Luzón-Toro B, García-Alonso L, Torroglosa A, Marbà M, Enguix-Riego MV, Montaner D, Antiñolo G, Dopazo J, Borrego S. Four new loci associations discovered by pathway-based and network analyses of the genome-wide variability profile of Hirschsprung's disease. Orphanet Journal of Rare Diseases. 7: 103. PMID 23270508 DOI: 10.1186/1750-1172-7-103  0.414
2012 Fernandez P, Soria M, Blesa D, DiRienzo J, Moschen S, Rivarola M, Clavijo BJ, Gonzalez S, Peluffo L, Príncipi D, Dosio G, Aguirrezabal L, García-García F, Conesa A, Hopp E, ... Dopazo J, et al. Development, characterization and experimental validation of a cultivated sunflower (Helianthus annuus L.) gene expression oligonucleotide microarray. Plos One. 7: e45899. PMID 23110046 DOI: 10.1371/Journal.Pone.0045899  0.423
2012 García-Alonso L, Alonso R, Vidal E, Amadoz A, de María A, Minguez P, Medina I, Dopazo J. Discovering the hidden sub-network component in a ranked list of genes or proteins derived from genomic experiments. Nucleic Acids Research. 40: e158. PMID 22844098 DOI: 10.1093/Nar/Gks699  0.386
2012 Medina I, De Maria A, Bleda M, Salavert F, Alonso R, Gonzalez CY, Dopazo J. VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by Next-Generation Sequencing. Nucleic Acids Research. 40: W54-8. PMID 22693211 DOI: 10.1093/Nar/Gks572  0.345
2012 Bleda M, Medina I, Alonso R, De Maria A, Salavert F, Dopazo J. Inferring the regulatory network behind a gene expression experiment. Nucleic Acids Research. 40: W168-72. PMID 22693210 DOI: 10.1093/Nar/Gks573  0.379
2012 Heyn H, Vidal E, Sayols S, Sanchez-Mut JV, Moran S, Medina I, Sandoval J, Simó-Riudalbas L, Szczesna K, Huertas D, Gatto S, Matarazzo MR, Dopazo J, Esteller M. Whole-genome bisulfite DNA sequencing of a DNMT3B mutant patient. Epigenetics : Official Journal of the Dna Methylation Society. 7: 542-50. PMID 22595875 DOI: 10.4161/Epi.20523  0.346
2012 Rivarola M, Gonzalez S, Clavijo B, Fernandez P, Martinez M, Ceron-Cuchi M, Cravero S, Dopazo J, Farber M, Paniego N. Data Merge Annotation Pipeline (DMAP): utilizing an ontology driven database with a sequence coordinate based approach to prokaryotic annotation F1000research. 3. DOI: 10.7490/F1000Research.1090045.1  0.323
2012 Tarazona S, García F, Ferrer A, Dopazo J, Conesa A. NOIseq: a RNA-seq differential expression method robust for sequencing depth biases Embnet.Journal. 17: 18. DOI: 10.14806/Ej.17.B.265  0.391
2012 Tarazona S, Prado-López S, Dopazo J, Ferrer A, Conesa A. Variable selection for multifactorial genomic data Chemometrics and Intelligent Laboratory Systems. 110: 113-122. DOI: 10.1016/J.Chemolab.2011.10.012  0.388
2011 González-del Pozo M, Borrego S, Barragán I, Pieras JI, Santoyo J, Matamala N, Naranjo B, Dopazo J, Antiñolo G. Mutation screening of multiple genes in Spanish patients with autosomal recessive retinitis pigmentosa by targeted resequencing. Plos One. 6: e27894. PMID 22164218 DOI: 10.1371/Journal.Pone.0027894  0.352
2011 Khalaf AA, Gmitter FG, Conesa A, Dopazo J, Moore GA. Fortunella margarita transcriptional reprogramming triggered by Xanthomonas citri subsp. citri. Bmc Plant Biology. 11: 159. PMID 22078099 DOI: 10.1186/1471-2229-11-159  0.42
2011 Jimenez RC, Salazar GA, Gel B, Dopazo J, Mulder N, Corpas M. myKaryoView: a light-weight client for visualization of genomic data. Plos One. 6: e26345. PMID 22046276 DOI: 10.1371/Journal.Pone.0026345  0.355
2011 Sánchez R, Serra F, Tárraga J, Medina I, Carbonell J, Pulido L, de María A, Capella-Gutíerrez S, Huerta-Cepas J, Gabaldón T, Dopazo J, Dopazo H. Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. Nucleic Acids Research. 39: W470-4. PMID 21646336 DOI: 10.1093/Nar/Gkr408  0.32
2011 Durban J, Juárez P, Angulo Y, Lomonte B, Flores-Diaz M, Alape-Girón A, Sasa M, Sanz L, Gutiérrez JM, Dopazo J, Conesa A, Calvete JJ. Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing. Bmc Genomics. 12: 259. PMID 21605378 DOI: 10.1186/1471-2164-12-259  0.318
2011 Huerta-Cepas J, Dopazo J, Huynen MA, Gabaldón T. Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication. Briefings in Bioinformatics. 12: 442-8. PMID 21515902 DOI: 10.1093/Bib/Bbr022  0.403
2011 Trevino V, Tadesse MG, Vannucci M, Al-Shahrour F, Antczak P, Durant S, Bikfalvi A, Dopazo J, Campbell MJ, Falciani F. Analysis of normal-tumour tissue interaction in tumours: prediction of prostate cancer features from the molecular profile of adjacent normal cells. Plos One. 6: e16492. PMID 21479216 DOI: 10.1371/Journal.Pone.0016492  0.33
2011 Minguez P, Dopazo J. Assessing the biological significance of gene expression signatures and co-expression modules by studying their network properties. Plos One. 6: e17474. PMID 21408226 DOI: 10.1371/Journal.Pone.0017474  0.403
2011 Serra F, Arbiza L, Dopazo J, Dopazo H. Natural selection on functional modules, a genome-wide analysis. Plos Computational Biology. 7: e1001093. PMID 21390268 DOI: 10.1371/Journal.Pcbi.1001093  0.375
2011 Tarazona S, Garcia-Alcalde F, Dopazo J, Ferrer A, Conesa A. Differential expression in RNA-seq: A matter of depth Genome Research. 21: 2213-2223. DOI: 10.1101/Gr.124321.111  0.351
2011 Cárdaba B, Aguerri M, Florido F, Montaner D, Mata M, López-Cacho J, Gallardo S, Dopazo J, Lahoz C. Gene-expression Profiling And Differential Pathways In The Sensitization And Tolerance To Allergens Journal of Allergy and Clinical Immunology. 127: AB263-AB263. DOI: 10.1016/J.Jaci.2010.12.1049  0.365
2010 Bonifaci N, Górski B, Masojć B, Wokołorczyk D, Jakubowska A, Dębniak T, Berenguer A, Serra Musach J, Brunet J, Dopazo J, Narod SA, Lubiński J, Lázaro C, Cybulski C, Pujana MA. Exploring the link between germline and somatic genetic alterations in breast carcinogenesis. Plos One. 5: e14078. PMID 21124932 DOI: 10.1371/Journal.Pone.0014078  0.323
2010 García-Alcalde F, García-López F, Dopazo J, Conesa A. Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data. Bioinformatics (Oxford, England). 27: 137-9. PMID 21098431 DOI: 10.1093/Bioinformatics/Btq594  0.339
2010 Barragán I, Borrego S, Pieras JI, González-del Pozo M, Santoyo J, Ayuso C, Baiget M, Millan JM, Mena M, Abd El-Aziz MM, Audo I, Zeitz C, Littink KW, Dopazo J, Bhattacharya SS, et al. Mutation spectrum of EYS in Spanish patients with autosomal recessive retinitis pigmentosa. Human Mutation. 31: E1772-800. PMID 21069908 DOI: 10.1002/Humu.21334  0.317
2010 Galán A, Montaner D, Póo ME, Valbuena D, Ruiz V, Aguilar C, Dopazo J, Simón C. Functional genomics of 5- to 8-cell stage human embryos by blastomere single-cell cDNA analysis. Plos One. 5: e13615. PMID 21049019 DOI: 10.1371/Journal.Pone.0013615  0.325
2010 Al-Shahrour F, Minguez P, Marqués-Bonet T, Gazave E, Navarro A, Dopazo J. Selection upon genome architecture: conservation of functional neighborhoods with changing genes. Plos Computational Biology. 6: e1000953. PMID 20949098 DOI: 10.1371/Journal.Pcbi.1000953  0.402
2010 Shi L, Campbell G, Jones WD, Campagne F, Wen Z, Walker SJ, Su Z, Chu TM, Goodsaid FM, Pusztai L, Shaughnessy JD, Oberthuer A, Thomas RS, Paules RS, Fielden M, ... ... Dopazo J, et al. The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. Nature Biotechnology. 28: 827-38. PMID 20676074 DOI: 10.1038/Nbt.1665  0.331
2010 Shi W, Bessarabova M, Dosymbekov D, Dezso Z, Nikolskaya T, Dudoladova M, Serebryiskaya T, Bugrim A, Guryanov A, Brennan RJ, Shah R, Dopazo J, Chen M, Deng Y, Shi T, et al. Functional analysis of multiple genomic signatures demonstrates that classification algorithms choose phenotype-related genes. The Pharmacogenomics Journal. 10: 310-23. PMID 20676069 DOI: 10.1038/Tpj.2010.35  0.419
2010 Nueda MJ, Carbonell J, Medina I, Dopazo J, Conesa A. Serial Expression Analysis: a web tool for the analysis of serial gene expression data. Nucleic Acids Research. 38: W239-45. PMID 20525784 DOI: 10.1093/Nar/Gkq488  0.413
2010 Medina I, Carbonell J, Pulido L, Madeira SC, Goetz S, Conesa A, Tárraga J, Pascual-Montano A, Nogales-Cadenas R, Santoyo J, García F, Marbà M, Montaner D, Dopazo J. Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. Nucleic Acids Research. 38: W210-3. PMID 20478823 DOI: 10.1093/Nar/Gkq388  0.428
2010 Montaner D, Dopazo J. Multidimensional gene set analysis of genomic data. Plos One. 5: e10348. PMID 20436964 DOI: 10.1371/journal.pone.0010348  0.335
2010 Németh A, Conesa A, Santoyo-Lopez J, Medina I, Montaner D, Péterfia B, Solovei I, Cremer T, Dopazo J, Längst G. Initial genomics of the human nucleolus. Plos Genetics. 6: e1000889. PMID 20361057 DOI: 10.1371/Journal.Pgen.1000889  0.379
2010 Minguez P, Dopazo J. Functional genomics and networks: new approaches in the extraction of complex gene modules. Expert Review of Proteomics. 7: 55-63. PMID 20121476 DOI: 10.1586/Epr.09.103  0.366
2010 Huerta-Cepas J, Dopazo J, Gabaldón T. ETE: a python Environment for Tree Exploration. Bmc Bioinformatics. 11: 24. PMID 20070885 DOI: 10.1186/1471-2105-11-24  0.314
2010 Javierre BM, Fernandez AF, Richter J, Al-Shahrour F, Martin-Subero JI, Rodriguez-Ubreva J, Berdasco M, Fraga MF, O'Hanlon TP, Rider LG, Jacinto FV, Lopez-Longo FJ, Dopazo J, Forn M, Peinado MA, et al. Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus. Genome Research. 20: 170-9. PMID 20028698 DOI: 10.1101/Gr.100289.109  0.324
2010 Dopazo J. Functional profiling methods in cancer. Methods in Molecular Biology (Clifton, N.J.). 576: 363-74. PMID 19882272 DOI: 10.1007/978-1-59745-545-9_19  0.318
2010 Aggarwal M, Sánchez-Beato M, Gómez-López G, Al-Shahrour F, Martínez N, Rodríguez A, Ruiz-Ballesteros E, Camacho FI, Pérez-Rosado A, de la Cueva P, Artiga MJ, Pisano DG, Kimby E, Dopazo J, Villuendas R, et al. Functional signatures identified in B-cell non-Hodgkin lymphoma profiles. Leukemia & Lymphoma. 50: 1699-708. PMID 19863341 DOI: 10.1080/10428190903189035  0.351
2010 Montaner D, Dopazo J. Multidimensional Gene Set Analysis of Genomic Data Plos One. 5: e10348. DOI: 10.1371/Journal.Pone.0010348  0.443
2009 Nueda MJ, Sebastián P, Tarazona S, García-García F, Dopazo J, Ferrer A, Conesa A. Functional assessment of time course microarray data. Bmc Bioinformatics. 10: S9. PMID 19534758 DOI: 10.1186/1471-2105-10-S6-S9  0.405
2009 Medina I, Montaner D, Bonifaci N, Pujana MA, Carbonell J, Tarraga J, Al-Shahrour F, Dopazo J. Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies. Nucleic Acids Research. 37: W340-4. PMID 19502494 DOI: 10.1093/Nar/Gkp481  0.41
2009 Montaner D, Minguez P, Al-Shahrour F, Dopazo J. Gene set internal coherence in the context of functional profiling. Bmc Genomics. 10: 197. PMID 19397819 DOI: 10.1186/1471-2164-10-197  0.425
2009 Nobre LS, Al-Shahrour F, Dopazo J, Saraiva LM. Exploring the antimicrobial action of a carbon monoxide-releasing compound through whole-genome transcription profiling of Escherichia coli. Microbiology (Reading, England). 155: 813-824. PMID 19246752 DOI: 10.1099/Mic.0.023911-0  0.339
2009 Jantus Lewintre E, Reinoso Martín C, Montaner D, Marín M, José Terol M, Farrás R, Benet I, Calvete JJ, Dopazo J, García-Conde J. Analysis of chronic lymphotic leukemia transcriptomic profile: differences between molecular subgroups. Leukemia & Lymphoma. 50: 68-79. PMID 19127482 DOI: 10.1080/10428190802541807  0.376
2009 Dopazo J. Formulating and testing hypotheses in functional genomics Artificial Intelligence in Medicine. 45: 97-107. PMID 18789659 DOI: 10.1016/J.Artmed.2008.08.003  0.415
2009 Rocke DM, Ideker T, Troyanskaya O, Quackenbush J, Dopazo J. Papers on normalization, variable selection, classification or clustering of microarray data Bioinformatics. 25: 701-702. DOI: 10.1093/Bioinformatics/Btp038  0.372
2008 Bonifaci N, Berenguer A, Díez J, Reina O, Medina I, Dopazo J, Moreno V, Pujana MA. Biological processes, properties and molecular wiring diagrams of candidate low-penetrance breast cancer susceptibility genes. Bmc Medical Genomics. 1: 62. PMID 19094230 DOI: 10.1186/1755-8794-1-62  0.39
2008 Dopazo J, Al-Shahrour F. Expression and microarrays. Methods in Molecular Biology (Clifton, N.J.). 453: 245-55. PMID 18712307 DOI: 10.1007/978-1-60327-429-6_12  0.409
2008 Horcajadas JA, Mínguez P, Dopazo J, Esteban FJ, Domínguez F, Giudice LC, Pellicer A, Simón C. Controlled ovarian stimulation induces a functional genomic delay of the endometrium with potential clinical implications. The Journal of Clinical Endocrinology and Metabolism. 93: 4500-10. PMID 18697870 DOI: 10.1210/Jc.2008-0588  0.35
2008 Conesa A, Bro R, García-García F, Prats JM, Götz S, Kjeldahl K, Montaner D, Dopazo J. Direct functional assessment of the composite phenotype through multivariate projection strategies. Genomics. 92: 373-83. PMID 18652888 DOI: 10.1016/J.Ygeno.2008.05.015  0.368
2008 Al-Shahrour F, Carbonell J, Minguez P, Goetz S, Conesa A, Tárraga J, Medina I, Alloza E, Montaner D, Dopazo J. Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. Nucleic Acids Research. 36: W341-6. PMID 18515841 DOI: 10.1093/Nar/Gkn318  0.393
2008 Tárraga J, Medina I, Carbonell J, Huerta-Cepas J, Minguez P, Alloza E, Al-Shahrour F, Vegas-Azcárate S, Goetz S, Escobar P, Garcia-Garcia F, Conesa A, Montaner D, Dopazo J. GEPAS, a web-based tool for microarray data analysis and interpretation. Nucleic Acids Research. 36: W308-14. PMID 18508806 DOI: 10.1093/Nar/Gkn303  0.394
2008 Götz S, García-Gómez JM, Terol J, Williams TD, Nagaraj SH, Nueda MJ, Robles M, Talón M, Dopazo J, Conesa A. High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Research. 36: 3420-35. PMID 18445632 DOI: 10.1093/Nar/Gkn176  0.399
2008 Huerta-Cepas J, Bueno A, Dopazo J, Gabaldón T. PhylomeDB: a database for genome-wide collections of gene phylogenies. Nucleic Acids Research. 36: D491-6. PMID 17962297 DOI: 10.1093/Nar/Gkm899  0.391
2008 Capriotti E, Arbiza L, Casadio R, Dopazo J, Dopazo H, Marti-Renom MA. Use of estimated evolutionary strength at the codon level improves the prediction of disease-related protein mutations in humans Human Mutation. 29: 198-204. PMID 17935148 DOI: 10.1002/Humu.20628  0.326
2008 Montero-Conde C, Martín-Campos JM, Lerma E, Gimenez G, Martínez-Guitarte JL, Combalía N, Montaner D, Matías-Guiu X, Dopazo J, de Leiva A, Robledo M, Mauricio D. Molecular profiling related to poor prognosis in thyroid carcinoma. Combining gene expression data and biological information. Oncogene. 27: 1554-61. PMID 17873908 DOI: 10.1038/Sj.Onc.1210792  0.354
2007 Ruiz-Llorente S, Montero-Conde C, Milne RL, Moya CM, Cebrián A, Letón R, Cascón A, Mercadillo F, Landa I, Borrego S, Pérez de Nanclares G, Alvarez-Escolá C, Díaz-Pérez JA, Carracedo A, Urioste M, ... ... Dopazo J, et al. Association study of 69 genes in the ret pathway identifies low-penetrance loci in sporadic medullary thyroid carcinoma. Cancer Research. 67: 9561-7. PMID 17909067 DOI: 10.1158/0008-5472.Can-07-1638  0.346
2007 Minguez P, Al-Shahrour F, Montaner D, Dopazo J. Functional profiling of microarray experiments using text-mining derived bioentities. Bioinformatics (Oxford, England). 23: 3098-9. PMID 17855415 DOI: 10.1093/Bioinformatics/Btm445  0.395
2007 Valls J, Grau M, Solé X, Hernández P, Montaner D, Dopazo J, Peinado MA, Capellá G, Moreno V, Pujana MA. CLEAR-test: combining inference for differential expression and variability in microarray data analysis. Journal of Biomedical Informatics. 41: 33-45. PMID 17597009 DOI: 10.1016/J.Jbi.2007.05.005  0.351
2007 Huerta-Cepas J, Dopazo H, Dopazo J, Gabaldón T. The human phylome. Genome Biology. 8: R109. PMID 17567924 DOI: 10.1186/Gb-2007-8-6-R109  0.395
2007 Al-Shahrour F, Minguez P, Tárraga J, Medina I, Alloza E, Montaner D, Dopazo J. FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments. Nucleic Acids Research. 35: W91-6. PMID 17478504 DOI: 10.1093/Nar/Gkm260  0.407
2007 Conde L, Montaner D, Burguet-Castell J, Tárraga J, Medina I, Al-Shahrour F, Dopazo J. ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling. Nucleic Acids Research. 35: W81-5. PMID 17468499 DOI: 10.1093/Nar/Gkm257  0.435
2007 Tárraga J, Medina I, Arbiza L, Huerta-Cepas J, Gabaldón T, Dopazo J, Dopazo H. Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics. Nucleic Acids Research. 35: W38-42. PMID 17452346 DOI: 10.1093/Nar/Gkm224  0.38
2007 Al-Shahrour F, Arbiza L, Dopazo H, Huerta-Cepas J, Mínguez P, Montaner D, Dopazo J. From genes to functional classes in the study of biological systems. Bmc Bioinformatics. 8: 114. PMID 17407596 DOI: 10.1186/1471-2105-8-114  0.427
2007 Medina I, Montaner D, Tárraga J, Dopazo J. Prophet, a web-based tool for class prediction using microarray data Bioinformatics. 23: 390-391. PMID 17138587 DOI: 10.1093/Bioinformatics/Btl602  0.357
2007 Milne RL, Ribas G, González-Neira A, Fagerholm R, Salas A, González E, Dopazo J, Nevanlinna H, Robledo M, Benítez J. ERCC4 associated with breast cancer risk: a two-stage case-control study using high-throughput genotyping. Cancer Research. 66: 9420-7. PMID 17018596 DOI: 10.1158/0008-5472.Can-06-1418  0.311
2007 Horcajadas J, Minguez P, Dopazo J, Esteban F, Pellicer A, Simon C. Gene expression analysis of the endometrium reveals that controlled ovarian stimulation induces a genomic delay with potential clinical implications Fertility and Sterility. 88: S43-S44. DOI: 10.1016/J.Fertnstert.2007.07.153  0.366
2006 Dopazo J. Functional interpretation of microarray experiments. Omics : a Journal of Integrative Biology. 10: 398-410. PMID 17069516 DOI: 10.1089/Omi.2006.10.398  0.407
2006 Montaner D, Tárraga J, Huerta-Cepas J, Burguet J, Vaquerizas JM, Conde L, Minguez P, Vera J, Mukherjee S, Valls J, Pujana MA, Alloza E, Herrero J, Al-Shahrour F, Dopazo J. Next station in microarray data analysis: GEPAS. Nucleic Acids Research. 34: W486-91. PMID 16845056 DOI: 10.1093/Nar/Gkl197  0.633
2006 Al-Shahrour F, Minguez P, Tárraga J, Montaner D, Alloza E, Vaquerizas JM, Conde L, Blaschke C, Vera J, Dopazo J. BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. Nucleic Acids Research. 34: W472-6. PMID 16845052 DOI: 10.1093/Nar/Gkl172  0.388
2006 Arbiza L, Dopazo J, Dopazo H. Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome Plos Computational Biology. 2: 288-300. PMID 16683019 DOI: 10.1371/Journal.Pcbi.0020038  0.364
2006 Azuaje F, Al-Shahrour F, Dopazo J. Ontology-driven approaches to analyzing data in functional genomics. Methods in Molecular Biology (Clifton, N.J.). 316: 67-86. PMID 16671401 DOI: 10.1385/1-59259-964-8:67  0.421
2006 Arbiza L, Duchi S, Montaner D, Burguet J, Pantoja-Uceda D, Pineda-Lucena A, Dopazo J, Dopazo H. Selective Pressures at a Codon-level Predict Deleterious Mutations in Human Disease Genes Journal of Molecular Biology. 358: 1390-1404. PMID 16584746 DOI: 10.1016/J.Jmb.2006.02.067  0.352
2006 Aggarwal M, Villuendas R, Al-Shahrour F, Aguilera AS, Martinez N, Ballesteros ER, Camacho FI, Perez A, Artiga MJ, Garcia-Marco JA, Dopazo J, Piris MA. Transcriptome Classification of B-Cell Non-Hodgkins Lymphoma. Blood. 108: 819-819. DOI: 10.1182/Blood.V108.11.819.819  0.399
2006 Lewintre EJ, Marin M, Reinoso C, Montaner D, Dopazo J, Calvete JJ, Garcia-Conde J. Analysis of B-CLL Transcriptomic and Proteomic Profiles: Differences between Molecular Subgroups. Blood. 108: 2088-2088. DOI: 10.1182/Blood.V108.11.2088.2088  0.399
2006 Minguez P, Al-Shahrour F, Dopazo J. A function-centric approach to the biological interpretation of microarray time-series. Genome Informatics. 17: 57-66. DOI: 10.11234/Gi1990.17.2_57  0.392
2005 Vaquerizas JM, Conde L, Yankilevich P, Cabezón A, Minguez P, Díaz-Uriarte R, Al-Shahrour F, Herrero J, Dopazo J. GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data. Nucleic Acids Research. 33: W616-20. PMID 15980548 DOI: 10.1093/Nar/Gki500  0.623
2005 Conde L, Vaquerizas JM, Ferrer-Costa C, de la Cruz X, Orozco M, Dopazo J. PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes. Nucleic Acids Research. 33: W501-5. PMID 15980522 DOI: 10.1093/Nar/Gki476  0.34
2005 Al-Shahrour F, Minguez P, Vaquerizas JM, Conde L, Dopazo J. BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments. Nucleic Acids Research. 33: W460-4. PMID 15980512 DOI: 10.1093/Nar/Gki456  0.418
2005 Dopazo H, Dopazo J. Genome-scale evidence of the nematode-arthropod clade Genome Biology. 6: R41. PMID 15892869 DOI: 10.1186/Gb-2005-6-5-R41  0.349
2005 Al-Shahrour F, Díaz-Uriarte R, Dopazo J. Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information. Bioinformatics (Oxford, England). 21: 2988-93. PMID 15840702 DOI: 10.1093/Bioinformatics/Bti457  0.446
2005 Cascón A, Ruiz-Llorente S, Rodríguez-Perales S, Honrado E, Martínez-Ramírez A, Letón R, Montero-Conde C, Benítez J, Dopazo J, Cigudosa JC, Robledo M. A novel candidate region linked to development of both pheochromocytoma and head/neck paraganglioma. Genes, Chromosomes & Cancer. 42: 260-8. PMID 15609347 DOI: 10.1002/Gcc.20139  0.332
2005 Hoffmann R, Dopazo J, Cigudosa JC, Valencia A. HCAD, closing the gap between breakpoints and genes. Nucleic Acids Research. 33: D511-3. PMID 15608250 DOI: 10.1093/Nar/Gki061  0.377
2005 Marin M, Jantus-Lewintre E, Sanz L, Garcia-Martin A, Reinoso C, Benet I, Montaner D, Vaquerizas JM, Dopazo J, Calvete JJ, Garcia-Conde J. Characterization of the Proteomic and Genomic Profiles of Chronic Lymphocytic Leukemia Patients with Distinct Clinical Prognosis According to the Mutational Status of the IgVH and BCL6 and Expression Level of CD38 and ZAP70. Blood. 106: 3272-3272. DOI: 10.1182/Blood.V106.11.3272.3272  0.405
2004 Santoyo J, Vaquerizas JM, Dopazo J. Highly specific and accurate selection of siRNAs for high-throughput functional assays. Bioinformatics (Oxford, England). 21: 1376-82. PMID 15591357 DOI: 10.1093/Bioinformatics/Bti196  0.367
2004 Meléndez B, Díaz-Uriarte R, Cuadros M, Martínez-Ramírez A, Fernández-Piqueras J, Dopazo A, Cigudosa JC, Rivas C, Dopazo J, Martínez-Delgado B, Benítez J. Gene expression analysis of chromosomal regions with gain or loss of genetic material detected by comparative genomic hybridization. Genes, Chromosomes & Cancer. 41: 353-65. PMID 15382261 DOI: 10.1002/Gcc.20105  0.409
2004 Vaquerizas JM, Dopazo J, Díaz-Uriarte R. DNMAD: web-based diagnosis and normalization for microarray data. Bioinformatics (Oxford, England). 20: 3656-8. PMID 15247094 DOI: 10.1093/Bioinformatics/Bth401  0.35
2004 Herrero J, Vaquerizas JM, Al-Shahrour F, Conde L, Mateos A, Díaz-Uriarte JS, Dopazo J. New challenges in gene expression data analysis and the extended GEPAS. Nucleic Acids Research. 32: W485-91. PMID 15215434 DOI: 10.1093/Nar/Gkh421  0.643
2004 Conde L, Vaquerizas JM, Santoyo J, Al-Shahrour F, Ruiz-Llorente S, Robledo M, Dopazo J. PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level. Nucleic Acids Research. 32: W242-8. PMID 15215388 DOI: 10.1093/Nar/Gkh438  0.353
2004 Al-Shahrour F, Díaz-Uriarte R, Dopazo J. FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinformatics (Oxford, England). 20: 578-80. PMID 14990455 DOI: 10.1093/Bioinformatics/Btg455  0.406
2003 Herrero J, Díaz-Uriarte R, Dopazo J. An approach to inferring transcriptional regulation among genes from large-scale expression data. Comparative and Functional Genomics. 4: 148-54. PMID 18629097 DOI: 10.1002/Cfg.237  0.605
2003 Herrero J, Al-Shahrour F, Díaz-Uriarte R, Mateos A, Vaquerizas JM, Santoyo J, Dopazo J. GEPAS: A web-based resource for microarray gene expression data analysis. Nucleic Acids Research. 31: 3461-7. PMID 12824345 DOI: 10.1093/Nar/Gkg591  0.624
2003 Martin MJ, Herrero J, Mateos A, Dopazo J. Comparing bacterial genomes through conservation profiles. Genome Research. 13: 991-8. PMID 12695324 DOI: 10.1101/Gr.678303  0.619
2003 Herrero J, Díaz-Uriarte R, Dopazo J. Gene expression data preprocessing. Bioinformatics (Oxford, England). 19: 655-6. PMID 12651726 DOI: 10.1093/Bioinformatics/Btg040  0.58
2003 Karzynski M, Mateos Á, Herrero J, Dopazo J. Using a Genetic Algorithm and a Perceptron forFeature Selection and Supervised Class Learningin DNA Microarray Data Artificial Intelligence Review. 20: 39-51. DOI: 10.1023/A:1026032530166  0.569
2002 Herrero J, Dopazo J. Combining hierarchical clustering and self-organizing maps for exploratory analysis of gene expression patterns. Journal of Proteome Research. 1: 467-70. PMID 12645919 DOI: 10.1021/Pr025521V  0.539
2002 Mateos A, Dopazo J, Jansen R, Tu Y, Gerstein M, Stolovitzky G. Systematic learning of gene functional classes from DNA array expression data by using multilayer perceptrons. Genome Research. 12: 1703-15. PMID 12421757 DOI: 10.1101/Gr.192502  0.35
2002 Tracey L, Villuendas R, Ortiz P, Dopazo A, Spiteri I, Lombardia L, Rodríguez-Peralto JL, Fernández-Herrera J, Hernández A, Fraga J, Dominguez O, Herrero J, Alonso MA, Dopazo J, Piris MA. Identification of genes involved in resistance to interferon-alpha in cutaneous T-cell lymphoma. The American Journal of Pathology. 161: 1825-37. PMID 12414529 DOI: 10.1016/S0002-9440(10)64459-8  0.562
2002 Tamames J, Clark D, Herrero J, Dopazo J, Blaschke C, Fernández JM, Oliveros JC, Valencia A. Bioinformatics methods for the analysis of expression arrays: data clustering and information extraction. Journal of Biotechnology. 98: 269-83. PMID 12141992 DOI: 10.1016/S0168-1656(02)00137-2  0.583
2001 Dopazo J, Mendoza A, Herrero J, Caldara F, Humbert Y, Friedli L, Guerrier M, Grand-Schenk E, Gandin C, de Francesco M, Polissi A, Buell G, Feger G, García E, Peitsch M, et al. Annotated draft genomic sequence from a Streptococcus pneumoniae type 19F clinical isolate. Microbial Drug Resistance (Larchmont, N.Y.). 7: 99-125. PMID 11442348 DOI: 10.1089/10766290152044995  0.51
2001 Dopazo J, Zanders E, Dragoni I, Amphlett G, Falciani F. Methods and approaches in the analysis of gene expression data. Journal of Immunological Methods. 250: 93-112. PMID 11251224 DOI: 10.1016/S0022-1759(01)00307-6  0.44
2001 Herrero J, Valencia A, Dopazo J. A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics (Oxford, England). 17: 126-36. PMID 11238068 DOI: 10.1093/Bioinformatics/17.2.126  0.524
2000 Oliveros JC, Blaschke C, Herrero J, Dopazo J, Valencia A. Expression profiles and biological function. Genome Informatics. Workshop On Genome Informatics. 11: 106-17. PMID 11700592  0.566
2000 Oliveros JC, Blaschke C, Herrero J, Dopazo J, Valencia A. Expression profiles and biological function. Genome Informatics. 11: 106-117. DOI: 10.11234/Gi1990.11.106  0.404
1998 Martín MJ, Núñez JI, Sobrino F, Dopazo J. A procedure for detecting selection in highly variable viral genomes: evidence of positive selection in antigenic regions of capsid protein VP1 of foot-and-mouth disease virus. Journal of Virological Methods. 74: 215-21. PMID 9779622 DOI: 10.1016/S0166-0934(98)00088-3  0.301
1994 Dopazo J, Sobrino F, López-Galíndez C. Estimates by computer simulation of genetic distances from comparisons of RNAse A mismatch cleavage patterns. Journal of Virological Methods. 45: 73-82. PMID 8270657 DOI: 10.1016/0166-0934(93)90141-D  0.326
1991 Peñalva MA, Moya A, Dopazo J, Ramón D. Sequences of isopenicillin N synthetase genes suggest horizontal gene transfer from prokaryotes to eukaryotes. Proceedings. Biological Sciences. 241: 164-9. PMID 1979440 DOI: 10.1098/Rspb.1990.0081  0.373
1991 Villaverde A, Martínez MA, Sobrino F, Dopazo J, Moya A, Domingo E. Fixation of mutations at the VP1 gene of foot-and-mouth disease virus. Can quasispecies define a transient molecular clock? Gene. 103: 147-53. PMID 1653754 DOI: 10.1016/0378-1119(91)90267-F  0.331
1988 Dopazo J, Sobrino F, Palma EL, Domingo E, Moya A. Gene encoding capsid protein VP1 of foot-and-mouth disease virus: a quasispecies model of molecular evolution. Proceedings of the National Academy of Sciences of the United States of America. 85: 6811-5. PMID 2842792 DOI: 10.1073/Pnas.85.18.6811  0.356
Low-probability matches (unlikely to be authored by this person)
2016 Hillung J, García-García F, Dopazo J, Cuevas JM, Elena SF. The transcriptomics of an experimentally evolved plant-virus interaction. Scientific Reports. 6: 24901. PMID 27113435 DOI: 10.1038/Srep24901  0.3
2010 Prado-Lopez S, Conesa A, Armiñán A, Martínez-Losa M, Escobedo-Lucea C, Gandia C, Tarazona S, Melguizo D, Blesa D, Montaner D, Sanz-González S, Sepúlveda P, Götz S, O'Connor JE, Moreno R, ... Dopazo J, et al. Hypoxia promotes efficient differentiation of human embryonic stem cells to functional endothelium. Stem Cells (Dayton, Ohio). 28: 407-18. PMID 20049902 DOI: 10.1002/Stem.295  0.299
1992 Rodríguez A, Martínez-Salas E, Dopazo J, Dávila M, Sáiz JC, Sobrino F. Primer design for specific diagnosis by PCR of highly variable RNA viruses: Typing of foot-and-mouth disease virus Virology. 189: 363-367. DOI: 10.1016/0042-6822(92)90717-4  0.298
1999 Wang HC, Dopazo J, de la Fraga LG, Zhu YP, Carazo JM. Self-organizing tree-growing network for the classification of protein sequences. Protein Science : a Publication of the Protein Society. 7: 2613-22. PMID 9865956 DOI: 10.1002/Pro.5560071215  0.298
2013 Puig-Butillé JA, Malvehy J, Potrony M, Trullas C, Garcia-García F, Dopazo J, Puig S. Role of CPI-17 in restoring skin homoeostasis in cutaneous field of cancerization: effects of topical application of a film-forming medical device containing photolyase and UV filters. Experimental Dermatology. 22: 494-6. PMID 23800065 DOI: 10.1111/Exd.12177  0.297
2016 Martínez H, Barrachina S, Castillo M, Tárraga J, Medina I, Dopazo J, Quintana-Ortí ES. A framework for genomic sequencing on clusters of multicore and manycore processors The International Journal of High Performance Computing Applications. 32: 393-406. DOI: 10.1177/1094342016653243  0.297
2015 Porta-Pardo E, Garcia-Alonso L, Hrabe T, Dopazo J, Godzik A. A Pan-Cancer Catalogue of Cancer Driver Protein Interaction Interfaces. Plos Computational Biology. 11: e1004518. PMID 26485003 DOI: 10.1371/Journal.Pcbi.1004518  0.297
2016 Sevilla T, Lupo V, Martínez-Rubio D, Sancho P, Sivera R, Chumillas MJ, García-Romero M, Pascual-Pascual SI, Muelas N, Dopazo J, Vílchez JJ, Palau F, Espinós C. Mutations in the MORC2 gene cause axonal Charcot-Marie-Tooth disease. Brain : a Journal of Neurology. 139: 62-72. PMID 26497905 DOI: 10.1093/Brain/Awv311  0.297
2014 Carmona FJ, Davalos V, Vidal E, Gomez A, Heyn H, Hashimoto Y, Vizoso M, Martinez-Cardus A, Sayols S, Ferreira HJ, Sánchez-Mut JV, Morán S, Margelí M, Castella E, Berdasco M, ... ... Dopazo J, et al. A comprehensive DNA methylation profile of epithelial-to-mesenchymal transition. Cancer Research. 74: 5608-19. PMID 25106427 DOI: 10.1158/0008-5472.Can-13-3659  0.294
2018 Matalonga L, Serf A, Martinez O, Piscia D, Camacho F, Dopazo J, Capella-Gutierrez S, Valencia A, Keane T, Rambla J, Beltran S. ELIXIR Implementation Study End Report: Remote real-time visualization of human rare disease genomics data (RD-Connect) stored at the EGA F1000research. 7. DOI: 10.7490/F1000Research.1115872.1  0.293
2006 Conde L, Vaquerizas JM, Dopazo H, Arbiza L, Reumers J, Rousseau F, Schymkowitz J, Dopazo J. PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes. Nucleic Acids Research. 34: W621-5. PMID 16845085 DOI: 10.1093/Nar/Gkl071  0.293
2014 Desoignies N, Carbonell J, Moreau J, Conesa A, Dopazo J, Legrève A. Molecular interactions between sugar beet andPolymyxa betaeduring its life cycle Annals of Applied Biology. 164: 244-256. DOI: 10.1111/Aab.12095  0.293
2001 Elena SF, Dopazo J, Peña M, Flores R, Diener TO, Moya A. Phylogenetic analysis of viroid and viroid-like satellite RNAs from plants: A reassessment Journal of Molecular Evolution. 53: 155-159. PMID 11479686 DOI: 10.1007/S002390010203  0.293
2012 Bleda M, Tarraga J, de Maria A, Salavert F, Garcia-Alonso L, Celma M, Martin A, Dopazo J, Medina I. CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources. Nucleic Acids Research. 40: W609-14. PMID 22693220 DOI: 10.1093/Nar/Gks575  0.292
2009 Minguez P, Götz S, Montaner D, Al-Shahrour F, Dopazo J. SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks. Nucleic Acids Research. 37: W109-14. PMID 19454602 DOI: 10.1093/Nar/Gkp402  0.291
1998 Núñez JI, Blanco E, Hernández T, Gómez-Tejedor C, Martín MJ, Dopazo J, Sobrino F. A RT-PCR assay for the differential diagnosis of vesicular viral diseases of swine. Journal of Virological Methods. 72: 227-35. PMID 9694330 DOI: 10.1016/S0166-0934(98)00032-9  0.29
2012 Minguez P, Dopazo J. Protein Interactions for Functional Genomics International Journal of Knowledge Discovery in Bioinformatics. 3: 15-30. DOI: 10.4018/Ijkdb.2012100102  0.29
2015 Luzón-Toro B, Bleda M, Navarro E, García-Alonso L, Ruiz-Ferrer M, Medina I, Martín-Sánchez M, Gonzalez CY, Fernández RM, Torroglosa A, Antiñolo G, Dopazo J, Borrego S. Identification of epistatic interactions through genome-wide association studies in sporadic medullary and juvenile papillary thyroid carcinomas. Bmc Medical Genomics. 8: 83. PMID 26690675 DOI: 10.1186/S12920-015-0160-7  0.29
1997 Dopazo J, Carazo JM. Phylogenetic reconstruction using an unsupervised growing neural network that adopts the topology of a phylogenetic tree. Journal of Molecular Evolution. 44: 226-33. PMID 9069183 DOI: 10.1007/Pl00006139  0.289
2010 Moreno-Manzano V, Rodríguez-Jiménez FJ, Aceña-Bonilla JL, Fustero-Lardíes S, Erceg S, Dopazo J, Montaner D, Stojkovic M, Sánchez-Puelles JM. FM19G11, a New Hypoxia-inducible Factor (HIF) Modulator, Affects Stem Cell Differentiation Status* Journal of Biological Chemistry. 285: 1333-1342. DOI: 10.1074/Jbc.M109.008326  0.289
2020 Bojic S, Falco MM, Stojkovic P, Ljujic B, Gazdic Jankovic M, Armstrong L, Markovic N, Dopazo J, Lako M, Bauer R, Stojkovic M. Platform to study intracellular polystyrene nanoplastic pollution and clinical outcomes. Stem Cells (Dayton, Ohio). PMID 32614127 DOI: 10.1002/Stem.3244  0.289
2020 Puerto-Camacho P, Amaral AT, Diaz-Martin J, Bolado-Carrancio A, Jordan-Perez C, Salguero-Aranda C, Esteban-Medina M, Alamo-Alvarez I, Dopazo J, Bernabeu C, Byron A, Brunton VG, Álava Ed. Abstract 6158: The relevance of endoglin and MMP14 to the metastatic potential of Ewing sarcoma cells Cancer Research. 80: 6158-6158. DOI: 10.1158/1538-7445.Am2020-6158  0.289
2012 García-Alcalde F, Okonechnikov K, Carbonell J, Cruz LM, Götz S, Tarazona S, Dopazo J, Meyer TF, Conesa A. Qualimap: evaluating next-generation sequencing alignment data. Bioinformatics (Oxford, England). 28: 2678-9. PMID 22914218 DOI: 10.1093/Bioinformatics/Bts503  0.288
2020 Peña-Chilet M, Roldan G, Pérez-Florido J, Ortuño FM, Carmona R, Aquino-Quintans V, López-López D, Navarro A, Fernández-Rueda JL, Dopazo J. The database of Spanish population variability: a crowdsourcing resource for collecting local genomic data F1000research. 9. DOI: 10.7490/F1000Research.1117944.1  0.287
2016 Urreizti R, Roca-Ayats N, Trepat J, Garcia-Garcia F, Aleman A, Orteschi D, Marangi G, Neri G, Opitz JM, Dopazo J, Cormand B, Vilageliu L, Balcells S, Grinberg D. Screening of CD96 and ASXL1 in 11 patients with Opitz C or Bohring-Opitz syndromes. American Journal of Medical Genetics. Part A. 170: 24-31. PMID 26768331 DOI: 10.1002/Ajmg.A.37418  0.287
1993 Dopazo J, Rodríguez A, Sáiz JC, Sobrino F. Design of primers for PCR amplification of highly variable genomes. Computer Applications in the Biosciences : Cabios. 9: 123-5. PMID 8386978 DOI: 10.1093/Bioinformatics/9.2.123  0.285
2019 Perez-Gil D, Lopez FJ, Dopazo J, Marin-Garcia P, Rendon A, Medina I. PyCellBase, an efficient python package for easy retrieval of biological data from heterogeneous sources. Bmc Bioinformatics. 20: 159. PMID 30922213 DOI: 10.1186/S12859-019-2726-4  0.284
1993 Sáiz JC, Sobrino F, Dopazo J. Molecular epidemiology of foot-and-mouth disease virus type O. The Journal of General Virology. 2281-5. PMID 8409952 DOI: 10.1099/0022-1317-74-10-2281  0.284
1996 Quiñones-Mateu ME, Holguín A, Dopazo J, Nájera I, Domingo E. Point mutant frequencies in the pol gene of human immunodeficiency virus type 1 are two- to threefold lower than those of env. Aids Research and Human Retroviruses. 12: 1117-28. PMID 8844016 DOI: 10.1089/Aid.1996.12.1117  0.283
2006 Goñi JR, Vaquerizas JM, Dopazo J, Orozco M. Exploring the reasons for the large density of triplex-forming oligonucleotide target sequences in the human regulatory regions. Bmc Genomics. 7: 63. PMID 16566817 DOI: 10.1186/1471-2164-7-63  0.283
2007 Hernández P, Huerta-Cepas J, Montaner D, Al-Shahrour F, Valls J, Gómez L, Capellá G, Dopazo J, Pujana MA. Evidence for systems-level molecular mechanisms of tumorigenesis. Bmc Genomics. 8: 185. PMID 17584915 DOI: 10.1186/1471-2164-8-185  0.283
2011 Yung S, Ledran M, Moreno-Gimeno I, Conesa A, Montaner D, Dopazo J, Dimmick I, Slater NJ, Marenah L, Real PJ, Paraskevopoulou I, Bisbal V, Burks D, Santibanez-Koref M, Moreno R, et al. Large-scale transcriptional profiling and functional assays reveal important roles for Rho-GTPase signalling and SCL during haematopoietic differentiation of human embryonic stem cells. Human Molecular Genetics. 20: 4932-46. PMID 21937587 DOI: 10.1093/Hmg/Ddr431  0.281
2010 Peña A, Teeling H, Huerta-Cepas J, Santos F, Yarza P, Brito-Echeverría J, Lucio M, Schmitt-Kopplin P, Meseguer I, Schenowitz C, Dossat C, Barbe V, Dopazo J, Rosselló-Mora R, Schüler M, et al. Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains. The Isme Journal. 4: 882-95. PMID 20164864 DOI: 10.1038/Ismej.2010.6  0.276
1993 Dopazo J, Sobrino F. A computer program for the design of PCR primers for diagnosis of highly variable genomes. Journal of Virological Methods. 41: 157-65. PMID 8388397 DOI: 10.1016/0166-0934(93)90123-9  0.275
2005 Palacios J, Honrado E, Osorio A, Cazorla A, Sarrió D, Barroso A, Rodríguez S, Cigudosa JC, Diez O, Alonso C, Lerma E, Dopazo J, Rivas C, Benítez J. Phenotypic characterization of BRCA1 and BRCA2 tumors based in a tissue microarray study with 37 immunohistochemical markers. Breast Cancer Research and Treatment. 90: 5-14. PMID 15770521 DOI: 10.1007/S10549-004-1536-0  0.274
1990 Dopazo J. Multiple sequence editing by spreadsheet. Bioinformatics. 6: 401-402. PMID 2257503 DOI: 10.1093/Bioinformatics/6.4.401  0.274
2007 Marti-Renom MA, Rossi A, Al-Shahrour F, Davis FP, Pieper U, Dopazo J, Sali A. The AnnoLite and AnnoLyze programs for comparative annotation of protein structures. Bmc Bioinformatics. 8: S4. PMID 17570147 DOI: 10.1186/1471-2105-8-S4-S4  0.274
2014 González-del Pozo M, Méndez-Vidal C, Bravo-Gil N, Vela-Boza A, Dopazo J, Borrego S, Antiñolo G. Exome sequencing reveals novel and recurrent mutations with clinical significance in inherited retinal dystrophies. Plos One. 9: e116176. PMID 25544989 DOI: 10.1371/Journal.Pone.0116176  0.273
2016 Salavert F, García-Alonso L, Sánchez R, Alonso R, Bleda M, Medina I, Dopazo J. Web-based network analysis and visualization using CellMaps. Bioinformatics (Oxford, England). PMID 27296979 DOI: 10.1093/Bioinformatics/Btw332  0.273
2011 González-Pérez S, Gutiérrez J, García-García F, Osuna D, Dopazo J, Lorenzo Ó, Revuelta JL, Arellano JB. Early transcriptional defense responses in Arabidopsis cell suspension culture under high-light conditions. Plant Physiology. 156: 1439-56. PMID 21531897 DOI: 10.1104/Pp.111.177766  0.271
1992 Sánchez CM, Gebauer F, Suñé C, Mendez A, Dopazo J, Enjuanes L. Genetic evolution and tropism of transmissible gastroenteritis coronaviruses. Virology. 190: 92-105. PMID 1326823 DOI: 10.1016/0042-6822(92)91195-Z  0.271
2019 Casimiro-Soriguer CS, Loucera C, Perez Florido J, López-López D, Dopazo J. Antibiotic resistance and metabolic profiles as functional biomarkers that accurately predict the geographic origin of city metagenomics samples. Biology Direct. 14: 15. PMID 31429791 DOI: 10.1186/S13062-019-0246-9  0.269
2007 Conde L, Montaner D, Burguet-Castell J, Tárraga J, Al-Shahrour F, Dopazo J. Functional profiling and gene expression analysis of chromosomal copy number alterations. Bioinformation. 1: 432-5. PMID 17597935 DOI: 10.6026/97320630001432  0.269
2007 Conde L, Montaner D, Burguet-Castell J, Tárraga J, Al-Shahrour F, Dopazo J. Functional profiling and gene expression analysis of chromosomal copy number alterations. Bioinformation. 1: 432-5. PMID 17597935 DOI: 10.6026/97320630001432  0.269
2015 Pozo MG, Bravo-Gil N, Méndez-Vidal C, Montero-de-Espinosa I, Millán JM, Dopazo J, Borrego S, Antiñolo G. Re-evaluation casts doubt on the pathogenicity of homozygous USH2A p.C759F. American Journal of Medical Genetics. Part A. 167: 1597-600. PMID 25823529 DOI: 10.1002/Ajmg.A.37003  0.268
1994 García O, Martín M, Dopazo J, Arbiza J, Frabasile S, Russi J, Hortal M, Perez-Breña P, Martínez I, García-Barreno B. Evolutionary pattern of human respiratory syncytial virus (subgroup A): cocirculating lineages and correlation of genetic and antigenic changes in the G glycoprotein. Journal of Virology. 68: 5448-59. PMID 8057427 DOI: 10.1128/Jvi.68.9.5448-5459.1994  0.268
2016 Sanchez-Mut JV, Heyn H, Vidal E, Moran S, Sayols S, Delgado-Morales R, Schultz MD, Ansoleaga B, Garcia-Esparcia P, Pons-Espinal M, de Lagran MM, Dopazo J, Rabano A, Avila J, Dierssen M, et al. Human DNA methylomes of neurodegenerative diseases show common epigenomic patterns. Translational Psychiatry. 6: e718. PMID 26784972 DOI: 10.1038/Tp.2015.214  0.267
2014 García-Cazorla A, Oyarzabal A, Fort J, Robles C, Castejón E, Ruiz-Sala P, Bodoy S, Merinero B, Lopez-Sala A, Dopazo J, Nunes V, Ugarte M, Artuch R, Palacín M, Rodríguez-Pombo P, et al. Two novel mutations in the BCKDK (branched-chain keto-acid dehydrogenase kinase) gene are responsible for a neurobehavioral deficit in two pediatric unrelated patients. Human Mutation. 35: 470-7. PMID 24449431 DOI: 10.1002/Humu.22513  0.266
2014 Méndez-Vidal C, Bravo-Gil N, González-Del Pozo M, Vela-Boza A, Dopazo J, Borrego S, Antiñolo G. Novel RP1 mutations and a recurrent BBS1 variant explain the co-existence of two distinct retinal phenotypes in the same pedigree. Bmc Genetics. 15: 143. PMID 25494902 DOI: 10.1186/S12863-014-0143-2  0.266
2012 Carbonell J, Alloza E, Arce P, Borrego S, Santoyo J, Ruiz-Ferrer M, Medina I, Jiménez-Almazán J, Méndez-Vidal C, González-Del Pozo M, Vela A, Bhattacharya SS, Antiñolo G, Dopazo J. A map of human microRNA variation uncovers unexpectedly high levels of variability. Genome Medicine. 4: 62. PMID 22906193 DOI: 10.1186/Gm363  0.265
1997 Taberner A, Dopazo J, Castañera P. Genetic characterization of populations of a de novo arisen sugar beet pest, Aubeonymus mariaefranciscae (Coleoptera, Curculionidae), by RAPD analysis. Journal of Molecular Evolution. 45: 24-31. PMID 9211731 DOI: 10.1007/Pl00006195  0.265
2015 Martinez H, Tarraga J, Medina I, Barrachina S, Castillo M, Dopazo J, Quintana-Orti ES. Concurrent and Accurate Short Read Mapping on Multicore Processors. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 995-1007. PMID 26451814 DOI: 10.1109/Tcbb.2015.2392077  0.265
2016 Dopazo J, Amadoz A, Bleda M, Garcia-Alonso L, Alemán A, García-García F, Rodriguez JA, Daub JT, Muntané G, Rueda A, Vela-Boza A, López-Domingo FJ, Florido JP, Arce P, Ruiz-Ferrer M, et al. 267 Spanish exomes reveal population-specific differences in disease-related genetic variation. Molecular Biology and Evolution. PMID 26764160 DOI: 10.1093/Molbev/Msw005  0.264
2016 Matalonga L, Bravo M, Peinado CS, García-Pelegrí E, Ugarteburu O, Vidal S, Llambrich M, Quintana E, Fuster-Jorge P, Gonzalez-Bravo MN, Beltran S, Dopazo J, Garcia-Garcia F, Foulquier F, Matthijs G, et al. Mutations in TRAPPC11 are Associated with a Congenital Disorder of Glycosylation. Human Mutation. PMID 27862579 DOI: 10.1002/Humu.23145  0.264
1994 Enjuanes L, Sánchez C, Gebauer F, Méndez A, Dopazo J, Ballesteros ML. Evolution and tropism of transmissible gastroenteritis coronavirus. Advances in Experimental Medicine and Biology. 342: 35-42. PMID 8209753 DOI: 10.1007/978-1-4615-2996-5_6  0.264
2016 Carretero M, Guerrero-Aspizua S, Illera N, Galvez V, Navarro M, García-García F, Dopazo J, Jorcano JL, Larcher F, Del Rio M. Differential Features between Chronic Skin Inflammatory Diseases Revealed in Skin-Humanized Psoriasis and Atopic Dermatitis Mouse Models. The Journal of Investigative Dermatology. 136: 136-45. PMID 26763433 DOI: 10.1038/Jid.2015.362  0.264
2015 Minguez P, Letunic I, Parca L, Garcia-Alonso L, Dopazo J, Huerta-Cepas J, Bork P. PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins. Nucleic Acids Research. 43: D494-502. PMID 25361965 DOI: 10.1093/Nar/Gku1081  0.264
2018 Hidalgo MR, Amadoz A, Çubuk C, Carbonell-Caballero J, Dopazo J. Models of cell signaling uncover molecular mechanisms of high-risk neuroblastoma and predict disease outcome. Biology Direct. 13: 16. PMID 30134948 DOI: 10.1186/S13062-018-0219-4  0.263
2016 Puchades-Carrasco L, Jantus-Lewintre E, Pérez-Rambla C, García-García F, Lucas R, Calabuig S, Blasco A, Dopazo J, Camps C, Pineda-Lucena A. Serum metabolomic profiling facilitates the non-invasive identification of metabolic biomarkers associated with the onset and progression of non-small cell lung cancer. Oncotarget. 7: 12904-16. PMID 26883203 DOI: 10.18632/Oncotarget.7354  0.263
2015 Sevilla T, Sivera R, Martínez-Rubio D, Lupo V, Chumillas MJ, Calpena E, Dopazo J, Vílchez JJ, Palau F, Espinós C. The EGR2 gene is involved in axonal Charcot-Marie-Tooth disease. European Journal of Neurology. 22: 1548-55. PMID 26204789 DOI: 10.1111/Ene.12782  0.262
1990 Carrillo C, Dopazo J, Moya A, Gonzalez M, Martínez MA, Saiz JC, Sobrino F. Comparison of vaccine strains and the virus causing the 1986 foot-and-mouth disease outbreak in Spain: epizootiological analysis. Virus Research. 15: 45-55. PMID 2156389 DOI: 10.1016/0168-1702(90)90012-Z  0.262
2011 Götz S, Arnold R, Sebastián-León P, Martín-Rodríguez S, Tischler P, Jehl MA, Dopazo J, Rattei T, Conesa A. B2G-FAR, a species-centered GO annotation repository. Bioinformatics (Oxford, England). 27: 919-24. PMID 21335611 DOI: 10.1093/bioinformatics/btr059  0.262
2008 Wilkinson MD, Senger M, Kawas E, Bruskiewich R, Gouzy J, Noirot C, Bardou P, Ng A, Haase D, Saiz Ede A, Wang D, Gibbons F, Gordon PM, Sensen CW, ... ... Dopazo J, et al. Interoperability with Moby 1.0--it's better than sharing your toothbrush! Briefings in Bioinformatics. 9: 220-31. PMID 18238804 DOI: 10.1093/Bib/Bbn003  0.261
2011 Alloza E, Al-Shahrour F, Cigudosa JC, Dopazo J. A large scale survey reveals that chromosomal copy-number alterations significantly affect gene modules involved in cancer initiation and progression. Bmc Medical Genomics. 4: 37. PMID 21548942 DOI: 10.1186/1755-8794-4-37  0.261
2011 Alloza E, Al-Shahrour F, Cigudosa JC, Dopazo J. A large scale survey reveals that chromosomal copy-number alterations significantly affect gene modules involved in cancer initiation and progression. Bmc Medical Genomics. 4: 37. PMID 21548942 DOI: 10.1186/1755-8794-4-37  0.261
2017 Gómez-López G, Dopazo J, Cigudosa JC, Valencia A, Al-Shahrour F. Precision medicine needs pioneering clinical bioinformaticians. Briefings in Bioinformatics. PMID 29077790 DOI: 10.1093/Bib/Bbx144  0.261
1993 Dopazo J, Dress A, Haeseler Av. Split decomposition: a technique to analyze viral evolution. Proceedings of the National Academy of Sciences of the United States of America. 90: 10320-10324. PMID 8234292 DOI: 10.1073/Pnas.90.21.10320  0.259
2018 Rodríguez Hernáez J, Cerón Cucchi ME, Cravero S, Martinez MC, Gonzalez S, Puebla A, Dopazo J, Farber M, Paniego N, Rivarola M. The first complete genomic structure of Butyrivibrio fibrisolvens and its chromid. Microbial Genomics. PMID 30216146 DOI: 10.1099/mgen.0.000216  0.259
2010 Bediaga NG, Acha-Sagredo A, Guerra I, Viguri A, Albaina C, Ruiz Diaz I, Rezola R, Alberdi MJ, Dopazo J, Montaner D, Renobales M, Fernández AF, Field JK, Fraga MF, Liloglou T, et al. DNA methylation epigenotypes in breast cancer molecular subtypes. Breast Cancer Research : Bcr. 12: R77. PMID 20920229 DOI: 10.1186/Bcr2721  0.257
2019 Pérez-Gutiérrez AM, Carmona R, Aquino-Quintans V, Pérez-Florido J, Peña-Chilet M, Dopazo J. Functional variant prioritization in rare diseases using a mechanistic approach F1000research. 8. DOI: 10.7490/F1000Research.1117737.1  0.257
2020 Palomero L, Galván-Femenía I, de Cid R, Espín R, Barnes DR, Cimba, Blommaert E, Gil-Gil M, Falo C, Stradella A, Ouchi D, Roso-Llorach A, Violan C, Peña-Chilet M, Dopazo J, et al. Immune Cell Associations with Cancer Risk. Iscience. 23: 101296. PMID 32622267 DOI: 10.1016/J.Isci.2020.101296  0.256
2019 Chacón-Solano E, León C, Díaz F, García-García F, García M, Escámez MJ, Guerrero-Aspizua S, Conti CJ, Mencía Á, Martínez-Santamaría L, Llames S, Pévida M, Carbonell-Caballero J, Puig-Butillé JA, Maseda R, ... ... Dopazo J, et al. Fibroblasts activation and abnormal extracellular matrix remodelling as common hallmarks in three cancer-prone genodermatoses. The British Journal of Dermatology. PMID 30693469 DOI: 10.1111/Bjd.17698  0.254
1995 Quiñones-Mateu ME, Dopazo J, Esté JA, Rota TR, Domingo E. Molecular characterization of human immunodeficiency virus type 1 isolates from Venezuela. Aids Research and Human Retroviruses. 11: 605-16. PMID 7576917 DOI: 10.1089/Aid.1995.11.605  0.254
1998 Trelles O, Ceron C, Wang HC, Dopazo J, Carazo JM. New phylogenetic venues opened by a novel implementation of the DNAml algorithm. Bioinformatics (Oxford, England). 14: 544-5. PMID 9694996 DOI: 10.1093/Bioinformatics/14.6.544  0.252
2013 Sánchez-Tena S, Reyes-Zurita FJ, Díaz-Moralli S, Vinardell MP, Reed M, García-García F, Dopazo J, Lupiáñez JA, Günther U, Cascante M. Maslinic acid-enriched diet decreases intestinal tumorigenesis in Apc(Min/+) mice through transcriptomic and metabolomic reprogramming. Plos One. 8: e59392. PMID 23527181 DOI: 10.1371/Journal.Pone.0059392  0.25
2013 Manuel Iglesias J, Beloqui I, Garcia-Garcia F, Leis O, Vazquez-Martin A, Eguiara A, Cufi S, Pavon A, Menendez JA, Dopazo J, Martin AG. Mammosphere formation in breast carcinoma cell lines depends upon expression of E-cadherin. Plos One. 8: e77281. PMID 24124614 DOI: 10.1371/Journal.Pone.0077281  0.25
2014 Torre I, González-Tendero A, García-Cañadilla P, Crispi F, García-García F, Bijnens B, Iruretagoyena I, Dopazo J, Amat-Roldán I, Gratacós E. Permanent cardiac sarcomere changes in a rabbit model of intrauterine growth restriction. Plos One. 9: e113067. PMID 25402351 DOI: 10.1371/Journal.Pone.0113067  0.249
2013 Sánchez-Tena S, Lizárraga D, Miranda A, Vinardell MP, García-García F, Dopazo J, Torres JL, Saura-Calixto F, Capellà G, Cascante M. Grape antioxidant dietary fiber inhibits intestinal polyposis in ApcMin/+ mice: relation to cell cycle and immune response. Carcinogenesis. 34: 1881-8. PMID 23615403 DOI: 10.1093/Carcin/Bgt140  0.247
1997 Martínez I, Dopazo J, Melero JA. Antigenic structure of the human respiratory syncytial virus G glycoprotein and relevance of hypermutation events for the generation of antigenic variants. The Journal of General Virology. 2419-29. PMID 9349460 DOI: 10.1099/0022-1317-78-10-2419  0.247
2021 Garrido-Rodriguez M, Lopez-Lopez D, Ortuno FM, Peña-Chilet M, Muñoz E, Calzado MA, Dopazo J. A versatile workflow to integrate RNA-seq genomic and transcriptomic data into mechanistic models of signaling pathways. Plos Computational Biology. 17: e1008748. PMID 33571195 DOI: 10.1371/journal.pcbi.1008748  0.246
2021 Moura DS, Peña-Chilet M, Cordero Varela JA, Alvarez-Alegret R, Agra-Pujol C, Izquierdo F, Ramos R, Ortega-Medina L, Martin-Davila F, Castilla-Ramirez C, Hernandez-Leon CN, Romagosa C, Vaz Salgado MA, Lavernia J, Bagué S, ... ... Dopazo J, et al. A DNA damage repair gene-associated signature predicts responses of patients with advanced soft-tissue sarcoma to treatment with trabectedin. Molecular Oncology. PMID 33983674 DOI: 10.1002/1878-0261.12996  0.246
2016 Prieto J, León M, Ponsoda X, García-García F, Bort R, Serna E, Barneo-Muñoz M, Palau F, Dopazo J, López-García C, Torres J. Dysfunctional mitochondrial fission impairs cell reprogramming. Cell Cycle (Georgetown, Tex.). 0. PMID 27753531 DOI: 10.1080/15384101.2016.1241930  0.243
2001 N��ez JI, Mart�n MJ, Piccone ME, Carrillo E, Palma EL, Dopazo J, Sobrino F. Identification of optimal regions for phylogenetic studies on VP1 gene of foot-and-mouth disease virus: analysis of types A and O Argentinean viruses Veterinary Research. 32: 31-45. DOI: 10.1051/Vetres:2001107  0.242
1994 Adell JC, Dopazo J. Monte Carlo simulation in phylogenies: an application to test the constancy of evolutionary rates. Journal of Molecular Evolution. 38: 305-9. PMID 8006998 DOI: 10.1007/Bf00176093  0.241
1994 Dopazo J. Estimating errors and confidence intervals for branch lengths in phylogenetic trees by a bootstrap approach Journal of Molecular Evolution. 38. DOI: 10.1007/Bf00176092  0.24
2015 Romero A, García-García F, López-Perolio I, Ruiz de Garibay G, García-Sáenz JA, Garre P, Ayllón P, Benito E, Dopazo J, Díaz-Rubio E, Caldés T, de la Hoya M. BRCA1 Alternative splicing landscape in breast tissue samples. Bmc Cancer. 15: 219. PMID 25884417 DOI: 10.1186/S12885-015-1145-9  0.239
2011 De Baets G, Reumers J, Delgado Blanco J, Dopazo J, Schymkowitz J, Rousseau F. An evolutionary trade-off between protein turnover rate and protein aggregation favors a higher aggregation propensity in fast degrading proteins. Plos Computational Biology. 7: e1002090. PMID 21731483 DOI: 10.1371/Journal.Pcbi.1002090  0.238
2012 Ventoso I, Kochetov A, Montaner D, Dopazo J, Santoyo J. Extensive translatome remodeling during ER stress response in mammalian cells Plos One. 7. PMID 22574127 DOI: 10.1371/Journal.Pone.0035915  0.238
1998 Sáiz J, López-Labrador F, Ampurdanés S, Dopazo J, Forns X, Sánchez-Tapias J, Rodés J. The Prognostic Relevance of the Nonstructural 5A Gene Interferon Sensitivity Determining Region Is Different in Infections with Genotype 1b and 3a Isolates of Hepatitis C Virus The Journal of Infectious Diseases. 177: 839-847. PMID 9534954 DOI: 10.1086/515243  0.237
2011 Vivas Y, Martínez-García C, Izquierdo A, Garcia-Garcia F, Callejas S, Velasco I, Campbell M, Ros M, Dopazo A, Dopazo J, Vidal-Puig A, Medina-Gomez G. Early peroxisome proliferator-activated receptor gamma regulated genes involved in expansion of pancreatic beta cell mass. Bmc Medical Genomics. 4: 86. PMID 22208362 DOI: 10.1186/1755-8794-4-86  0.235
2017 Roca-Ayats N, Balcells S, Garcia-Giralt N, Falcó-Mascaró M, Martínez-Gil N, Abril JF, Urreizti R, Dopazo J, Quesada-Gómez JM, Nogués X, Mellibovsky L, Prieto-Alhambra D, Dunford JE, Javaid MK, Russell RG, et al. GGPS1 Mutation and Atypical Femoral Fractures with Bisphosphonates. The New England Journal of Medicine. 376: 1794-1795. PMID 28467865 DOI: 10.1056/Nejmc1612804  0.234
1994 Taberner A, Castañera P, Silvestre E, Dopazo J. Estimation of the intrinsic rate of natural increase and its error by both algebraic and resampling approaches. Computer Applications in the Biosciences : Cabios. 9: 535-40. PMID 8293326 DOI: 10.1093/Bioinformatics/9.5.535  0.233
2012 Carrero R, Cerrada I, Lledó E, Dopazo J, García-García F, Rubio MP, Trigueros C, Dorronsoro A, Ruiz-Sauri A, Montero JA, Sepúlveda P. IL1β induces mesenchymal stem cells migration and leucocyte chemotaxis through NF-κB. Stem Cell Reviews. 8: 905-16. PMID 22467443 DOI: 10.1007/S12015-012-9364-9  0.233
1988 Dopazo J. Reducing the effect of the data order in algorithms for constructing phylogenetic trees Bioinformatics. 4: 307-307. PMID 3167606 DOI: 10.1093/Bioinformatics/4.2.307  0.233
2020 Ostaszewski M, Mazein A, Gillespie ME, Kuperstein I, Niarakis A, Hermjakob H, Pico AR, Willighagen EL, Evelo CT, Hasenauer J, Schreiber F, Dräger A, Demir E, Wolkenhauer O, Furlong LI, ... ... Dopazo J, et al. Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms. Scientific Data. 7: 247. PMID 32678106 DOI: 10.1038/S41597-020-00589-W  0.232
2015 Terol J, Ibañez V, Carbonell J, Alonso R, Estornell LH, Licciardello C, Gut IG, Dopazo J, Talon M. Involvement of a citrus meiotic recombination TTC-repeat motif in the formation of gross deletions generated by ionizing radiation and MULE activation. Bmc Genomics. 16: 69. PMID 25758634 DOI: 10.1186/S12864-015-1280-3  0.23
2016 Sanghez V, Cubuk C, Sebastián-Leon P, Carobbio S, Dopazo J, Vidal-Puig A, Bartolomucci A. Chronic subordination stress selectively downregulates the insulin signaling pathway in liver and skeletal muscle but not in adipose tissue of male mice. Stress (Amsterdam, Netherlands). 1-11. PMID 26946982 DOI: 10.3109/10253890.2016.1151491  0.229
1993 Dopazo J, Taberner A, Moya A. Quantitative characterization of antigens using monoclonal antibody reactivities. Bioinformatics. 9: 101-107. PMID 7679608 DOI: 10.1093/Bioinformatics/9.1.101  0.228
1995 Calvo D, Dopazo J, Vega MA. The CD36, CLA-1 (CD36L1), and LIMPII (CD36L2) gene family: cellular distribution, chromosomal location, and genetic evolution. Genomics. 25: 100-6. PMID 7539776 DOI: 10.1016/0888-7543(95)80114-2  0.228
2012 Koziol A, Gonzalo P, Mota A, Pollán Á, Lorenzo C, Colomé N, Montaner D, Dopazo J, Arribas J, Canals F, Arroyo AG. The protease MT1‐MMP drives a combinatorial proteolytic program in activated endothelial cells The Faseb Journal. 26: 4481-4494. DOI: 10.1096/Fj.12-205906  0.227
2020 Ostaszewski M, Mazein A, Gillespie ME, Kuperstein I, Niarakis A, Hermjakob H, Pico AR, Willighagen EL, Evelo CT, Hasenauer J, Schreiber F, Dräger A, Demir E, Wolkenhauer O, Furlong LI, ... ... Dopazo J, et al. COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms. Scientific Data. 7: 136. PMID 32371892 DOI: 10.1038/S41597-020-0477-8  0.227
2011 Tarazona S, García-Alcalde F, Dopazo J, Ferrer A, Conesa A. Differential expression in RNA-seq: a matter of depth. Genome Research. 21: 2213-23. PMID 21903743 DOI: 10.1101/gr.124321.111  0.226
2017 Díaz F, León C, García-García F, Chacón-Solano E, Larcher F, Carbonell J, Puig J, Puig S, Dopazo J, del Río M. 601 Common mechanisms and signaling pathways in fibroblasts of cancer-prone genodermatoses Journal of Investigative Dermatology. 137: S295. DOI: 10.1016/J.Jid.2017.07.798  0.224
2020 Martin-Broto J, Cruz J, Penel N, Le Cesne A, Hindi N, Luna P, Moura DS, Bernabeu D, de Alava E, Lopez-Guerrero JA, Dopazo J, Peña-Chilet M, Gutierrez A, Collini P, Karanian M, et al. Pazopanib for treatment of typical solitary fibrous tumours: a multicentre, single-arm, phase 2 trial. The Lancet. Oncology. PMID 32066540 DOI: 10.1016/S1470-2045(19)30826-5  0.223
2021 Rian K, Hidalgo MR, Çubuk C, Falco MM, Loucera C, Esteban-Medina M, Alamo-Alvarez I, Peña-Chilet M, Dopazo J. Genome-scale mechanistic modeling of signaling pathways made easy: A bioconductor/cytoscape/web server framework for the analysis of omic data. Computational and Structural Biotechnology Journal. 19: 2968-2978. PMID 34136096 DOI: 10.1016/j.csbj.2021.05.022  0.223
2011 Prieur X, Mok CY, Velagapudi VR, Núñez V, Fuentes L, Montaner D, Ishikawa K, Camacho A, Barbarroja N, O'Rahilly S, Sethi JK, Dopazo J, OreÅ¡ič M, Ricote M, Vidal-Puig A. Differential lipid partitioning between adipocytes and tissue macrophages modulates macrophage lipotoxicity and M2/M1 polarization in obese mice. Diabetes. 60: 797-809. PMID 21266330 DOI: 10.2337/Db10-0705  0.223
2005 Arbiza L, Dopazo J, Dopazo HJ. Differentiating Positive Selection from Acceleration and Relaxation in Human and Chimp Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.0020038.Eor  0.221
2013 Lopez F, Rueda A, Perez-Florido J, Arce P, Cruz L, Carbonell J, Jimenez-Almazan J, Vidal E, Antiñolo G, Dopazo J, Santoyo J. Detecting high quality variants from color-space data F1000research. 4. DOI: 10.7490/F1000Research.1094092.1  0.221
2013 Cardaba B, Aguerri M, Calzada D, Montaner D, Mata M, Florido F, Dopazo J, Lahoz C. Molecular Pattern in Olive Pollen Response Journal of Allergy and Clinical Immunology. 131: AB44. DOI: 10.1016/J.Jaci.2012.12.841  0.221
2006 Dopazo J, Aloy P. Discovery and hypothesis generation through bioinformatics. Genome Biology. 7: 307. PMID 16522224 DOI: 10.1186/Gb-2006-7-2-307  0.217
2023 Nunez-Torres R, Pita G, Peña-Chilet M, López-López D, Zamora J, Roldán G, Herráez B, Álvarez N, Alonso MR, Dopazo J, Gonzalez-Neira A. A Comprehensive Analysis of 21 Actionable Pharmacogenes in the Spanish Population: From Genetic Characterisation to Clinical Impact. Pharmaceutics. 15. PMID 37111771 DOI: 10.3390/pharmaceutics15041286  0.216
2006 Largo C, Alvarez S, Saez B, Blesa D, Martin-Subero JI, González-García I, Brieva JA, Dopazo J, Siebert R, Calasanz MJ, Cigudosa JC. Identification of overexpressed genes in frequently gained/amplified chromosome regions in multiple myeloma. Haematologica. 91: 184-91. PMID 16461302  0.215
1991 Elena SF, Dopazo J, Flores R, Diener TO, Moya A. Phylogeny of viroids, viroidlike satellite RNAs, and the viroidlike domain of hepatitis δ virus RNA Proceedings of the National Academy of Sciences of the United States of America. 88: 5631-5634. PMID 1712103 DOI: 10.1073/Pnas.88.13.5631  0.214
1995 Martin MJ, González-Candelas F, Sobrino F, Dopazo J. A method for determining the position and size of optimal sequence regions for phylogenetic analysis. Journal of Molecular Evolution. 41: 1128-38. PMID 8587110  0.212
2019 Bogliolo M, Pujol R, Aza-Carmona M, Muñoz-Subirana N, Rodriguez-Santiago B, Casado JA, Rio P, Bauser C, Reina-Castillón J, Lopez-Sanchez M, Gonzalez-Quereda L, Gallano P, Catalá A, Ruiz-Llobet A, Badell I, ... ... Dopazo J, et al. Optimised molecular genetic diagnostics of Fanconi anaemia by whole exome sequencing and functional studies. Journal of Medical Genetics. PMID 31586946 DOI: 10.1136/jmedgenet-2019-106249  0.21
2014 Amadoz A, Sebastián-León P, Dopazo J. Drug activity prediction using mechanism-based biomarkers F1000research. 5. DOI: 10.7490/F1000Research.1096964.1  0.209
2021 Millán-Esteban D, Peña-Chilet M, García-Casado Z, Manrique-Silva E, Requena C, Bañuls J, López-Guerrero JA, Rodríguez-Hernández A, Traves V, Dopazo J, Virós A, Kumar R, Nagore E. Mutational Characterization of Cutaneous Melanoma Supports Divergent Pathways Model for Melanoma Development. Cancers. 13. PMID 34680367 DOI: 10.3390/cancers13205219  0.208
1998 Wang HC, Dopazo J, Carazo JM. Self-organizing tree growing network for classifying amino acids. Bioinformatics (Oxford, England). 14: 376-7. PMID 9632835 DOI: 10.1093/Bioinformatics/14.4.376  0.208
2004 Dopazo H, Santoyo J, Dopazo J. Phylogenomics and the number of characters required for obtaining an accurate phylogeny of eukaryote model species Bioinformatics. 20: i116-i121. PMID 15262789 DOI: 10.1093/bioinformatics/bth902  0.208
2016 Razzoli M, Frontini A, Gurney A, Mondini E, Cubuk C, Katz LS, Cero C, Bolan PJ, Dopazo J, Vidal-Puig A, Cinti S, Bartolomucci A. Stress-induced activation of brown adipose tissue prevents obesity in conditions of low adaptive thermogenesis. Molecular Metabolism. 5: 19-33. PMID 26844204 DOI: 10.1016/J.Molmet.2015.10.005  0.207
2023 Gawron P, Hoksza D, Piñero J, Peña-Chilet M, Esteban-Medina M, Fernandez-Rueda JL, Colonna V, Smula E, Heirendt L, Ancien F, Groues V, Satagopam VP, Schneider R, Dopazo J, Furlong LI, et al. Visualization of automatically combined disease maps and pathway diagrams for rare diseases. Frontiers in Bioinformatics. 3: 1101505. PMID 37502697 DOI: 10.3389/fbinf.2023.1101505  0.206
1995 Rojas JM, Dopazo J, Santana M, López-Galíndez C, Tabarés E. Comparative study of the genetic variability in thymidine kinase and glycoprotein B genes of herpes simplex viruses by the RNase A mismatch cleavage method. Virus Research. 35: 205-14. PMID 7762293 DOI: 10.1016/0168-1702(94)00097-V  0.206
2016 Maroñas O, Latorre A, Dopazo J, Pirmohamed M, Rodríguez-Antona C, Siest G, Carracedo Á, LLerena A. Progress in pharmacogenetics: consortiums and new strategies. Drug Metabolism and Personalized Therapy. 31: 17-23. PMID 26913460 DOI: 10.1515/dmpt-2015-0039  0.205
2019 Petkevicius K, Virtue S, Bidault G, Jenkins B, Çubuk C, Morgantini C, Aouadi M, Dopazo J, Serlie M, Koulman A, Vidal-Puig A. Accelerated phosphatidylcholine turnover in macrophages promotes adipose tissue inflammation in obesity. Elife. 8. PMID 31418690 DOI: 10.7554/Elife.47990  0.205
2020 Peña-Chilet M, Roldán G, Perez-Florido J, Ortuño FM, Carmona R, Aquino V, Lopez-Lopez D, Loucera C, Fernandez-Rueda JL, Gallego A, García-Garcia F, González-Neira A, Pita G, Núñez-Torres R, Santoyo-López J, ... ... Dopazo J, et al. CSVS, a crowdsourcing database of the Spanish population genetic variability. Nucleic Acids Research. PMID 32990755 DOI: 10.1093/nar/gkaa794  0.204
2014 García-García F, Fernández P, Conesa A, Paniego N, Heinz R, Peluffo L, Lia V, Canal Ldl, Ribichich KF, Chan R, Rienzo JD, Dopazo J. Using high-throughput technologies to improve stress tolerance characteristics in sunflower F1000research. 5. DOI: 10.7490/F1000Research.1097168.1  0.204
2020 Lopez-Lopez D, Loucera C, Carmona R, Aquino V, Salgado J, Pasalodos S, Miranda M, Alonso Á, Dopazo J. SMN1 copy-number and sequence variant analysis from next-generation sequencing data. Human Mutation. PMID 33058415 DOI: 10.1002/humu.24120  0.202
2014 Amadoz A, Sebastián-León P, Salavert F, Dopazo J. PATHiPRED: prediction models using the activation status of stimulus-response signaling circuits F1000research. 5. DOI: 10.7490/F1000Research.1096796.1  0.202
2022 López-Sánchez M, Loucera C, Peña-Chilet M, Dopazo J. Discovering potential interactions between rare diseases and COVID-19 by combining mechanistic models of viral infection with statistical modeling. Human Molecular Genetics. PMID 35022696 DOI: 10.1093/hmg/ddac007  0.2
2021 López MG, Fass M, Rivas JG, Carbonell-Caballero J, Vera P, Puebla A, Defacio R, Dopazo J, Paniego N, Hopp HE, Lia VV. Plastome genomics in South American maize landraces: chloroplast lineages parallel the geographic structuring of nuclear gene pools. Annals of Botany. PMID 33693521 DOI: 10.1093/aob/mcab038  0.196
2022 Degenhardt F, Ellinghaus D, Juzenas S, Lerga-Jaso J, Wendorff M, Maya-Miles D, Uellendahl-Werth F, ElAbd H, Rühlemann MC, Arora J, Özer O, Lenning OB, Myhre R, Vadla MS, Wacker EM, ... ... Dopazo J, et al. Detailed stratified GWAS analysis for severe COVID-19 in four European populations. Human Molecular Genetics. PMID 35848942 DOI: 10.1093/hmg/ddac158  0.196
1997 Aranda MA, Fraile A, Dopazo J, Malpica JM, García-Arenal F. Contribution of mutation and RNA recombination to the evolution of a plant pathogenic RNA. Journal of Molecular Evolution. 44: 81-8. PMID 9010139 DOI: 10.1007/PL00006124  0.195
2020 Salgado D, Armean IM, Baudis M, Beltran S, Capella-Gutierrez S, Carvalho-Silva D, Dominguez Del Angel V, Dopazo J, Furlong LI, Gao B, Garcia L, Gerloff D, Gut I, Gyenesei A, Habermann N, et al. The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research. F1000research. 9. PMID 34367618 DOI: 10.12688/f1000research.24887.1  0.191
1996 Suárez P, Zardoya R, Martín MJ, Prieto C, Dopazo J, Solana A, Castro JM. Phylogenetic relationships of european strains of porcine reproductive and respiratory syndrome virus (PRRSV) inferred from DNA sequences of putative ORF-5 and ORF-7 genes. Virus Research. 42: 159-65. PMID 8806183 DOI: 10.1016/0168-1702(95)01305-9  0.19
2019 Petkevicius K, Virtue S, Bidault G, Jenkins B, Çubuk C, Morgantini C, Aouadi M, Dopazo J, Serlie MJ, Koulman A, Vidal-Puig A. Author response: Accelerated phosphatidylcholine turnover in macrophages promotes adipose tissue inflammation in obesity Elife. DOI: 10.7554/Elife.47990.039  0.189
2008 Reumers J, Conde L, Medina I, Maurer-Stroh S, Van Durme J, Dopazo J, Rousseau F, Schymkowitz J. Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases. Nucleic Acids Research. 36: D825-9. PMID 18086700 DOI: 10.1093/nar/gkm979  0.188
2019 Çubuk C, Hidalgo MR, Amadoz A, Rian K, Salavert F, Pujana MA, Mateo F, Herranz C, Carbonell-Caballero J, Dopazo J. Differential metabolic activity and discovery of therapeutic targets using summarized metabolic pathway models. Npj Systems Biology and Applications. 5: 7. PMID 30854222 DOI: 10.1038/s41540-019-0087-2  0.186
2012 Martínez-Koziol A, Gonzalo P, Pollán Á, Mota A, Colomé N, Montaner D, Dopazo J, Arribas J, Canals F, Arroyo AG. A SILAC approach to MT1-MMP degradome in inflammatory angiogenesis Vascular Pharmacology. 56: 382. DOI: 10.1016/J.Vph.2011.08.207  0.185
2012 De Baets G, Van Durme J, Reumers J, Maurer-Stroh S, Vanhee P, Dopazo J, Schymkowitz J, Rousseau F. SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants. Nucleic Acids Research. 40: D935-9. PMID 22075996 DOI: 10.1093/nar/gkr996  0.185
2003 Conde L, Mateos Á, Herrero J, Dopazo J. Improved Class Prediction in DNA Microarray Gene Expression Data by Unsupervised Reduction of the Dimensionality followed by Supervised Learning with a Perceptron The Journal of Vlsi Signal Processing-Systems For Signal, Image, and Video Technology. 35: 245-253. DOI: 10.1023/B:VLSI.0000003023.90210.C8  0.184
2019 Chacón‐Solano E, León C, Díaz F, García‐García F, García M, Escámez M, Guerrero‐Aspizua S, Conti C, Mencía Á, Martínez‐Santamaría L, Llames S, Pévida M, Carbonell‐Caballero J, Puig‐Butillé J, Maseda R, ... ... Dopazo J, et al. Fibroblast activation and ECM remodelling in genodermatoses British Journal of Dermatology. 181. DOI: 10.1111/Bjd.18271  0.183
2019 Esteban-Medina M, Loucera C, Dopazo J, Peña-Chilet M. Mechanistic models and machine learning for drug repositioning in juvenile idiopathic arthritis F1000research. 8. DOI: 10.7490/F1000Research.1117756.1  0.183
2021 Villalba-Benito L, López-López D, Torroglosa A, Casimiro-Soriguer CS, Luzón-Toro B, Fernández RM, Moya-Jiménez MJ, Antiñolo G, Dopazo J, Borrego S. Genome-wide analysis of DNA methylation in Hirschsprung enteric precursor cells: unraveling the epigenetic landscape of enteric nervous system development. Clinical Epigenetics. 13: 51. PMID 33750457 DOI: 10.1186/s13148-021-01040-6  0.183
1992 Martínez MA, Dopazo J, Hernández J, Mateu MG, Sobrino F, Domingo E, Knowles NJ. Evolution of the capsid protein genes of foot-and-mouth disease virus: antigenic variation without accumulation of amino acid substitutions over six decades. Journal of Virology. 66: 3557-65. PMID 1316467 DOI: 10.1128/JVI.66.6.3557-3565.1992  0.181
2006 Dopazo J. Bioinformatics and cancer: an essential alliance. Clinical & Translational Oncology : Official Publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico. 8: 409-15. PMID 16790393 DOI: 10.1007/s12094-006-0194-6  0.18
2022 Ortiz-Aljaro P, Montes-Cano MA, García-Lozano JR, Aquino V, Carmona R, Perez-Florido J, García-Hernández FJ, Dopazo J, González-Escribano MF. Protein and functional isoform levels and genetic variants of the BAFF and APRIL pathway components in systemic lupus erythematosus. Scientific Reports. 12: 11219. PMID 35780200 DOI: 10.1038/s41598-022-15549-0  0.179
1994 Sáiz M, Dopazo J, Castro S, Romero J. Evolutionary relationships among bean common mosaic virus strains and closely related potyviruses. Virus Research. 31: 39-48. PMID 8165868 DOI: 10.1016/0168-1702(94)90069-8  0.179
2020 Falco MM, Peña-Chilet M, Loucera C, Hidalgo MR, Dopazo J. Mechanistic models of signaling pathways deconvolute the glioblastoma single-cell functional landscape. Nar Cancer. 2: zcaa011. PMID 34316686 DOI: 10.1093/narcan/zcaa011  0.179
2020 Salgado D, Armean IM, Baudis M, Beltran S, Capella-Gutierrez S, Carvalho-Silva D, Dominguez Del Angel V, Dopazo J, Furlong LI, Gao B, Garcia L, Gerloff D, Gut I, Gyenesei A, Habermann N, et al. The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research F1000research. 9: 1229. DOI: 10.12688/f1000research.24887.1  0.179
2020 Falco MM, Peña-Chilet M, Loucera C, Hidalgo MR, Dopazo J. Mechanistic models of signaling pathways deconvolute the glioblastoma single-cell functional landscape Nar Cancer. 2. DOI: 10.1093/narcan/zcaa011  0.178
2021 Rian K, Esteban-Medina M, Hidalgo MR, Çubuk C, Falco MM, Loucera C, Gunyel D, Ostaszewski M, Peña-Chilet M, Dopazo J. Mechanistic modeling of the SARS-CoV-2 disease map. Biodata Mining. 14: 5. PMID 33478554 DOI: 10.1186/s13040-021-00234-1  0.175
2014 Dopazo J. Genomics and transcriptomics in drug discovery. Drug Discovery Today. 19: 126-32. PMID 23773860 DOI: 10.1016/j.drudis.2013.06.003  0.175
2006 Horcajadas J, Mı́nguez P, Riesewijk A, Dopazo J, Pellicer A, Simón C. O-93 Fertility and Sterility. 86: S40. DOI: 10.1016/J.Fertnstert.2006.07.109  0.174
2010 Eixarch E, Torre I, Illa M, Iruretagoyena I, Amat-Roldan I, Crispi F, Figueras F, Garcia F, Dopazo J, Gratacós E. OC26.03: Bioinformatic analysis of genes regulating myocardiocyte contractile function in a rabbit model of cardiac dysfunction due to intrauterine growth restriction Ultrasound in Obstetrics and Gynecology. 36: 46-47. DOI: 10.1002/uog.7911  0.174
2019 Chacón‐Solano E, León C, Díaz F, García‐García F, García M, Escámez M, Guerrero‐Aspizua S, Conti C, Mencía Á, Martínez‐Santamaría L, Llames S, Pévida M, Carbonell‐Caballero J, Puig‐Butillé J, Maseda R, ... ... Dopazo J, et al. 遗传性皮肤病中的纤维母细胞活化和 ECM 重塑 British Journal of Dermatology. 181. DOI: 10.1111/Bjd.18285  0.173
2021 Ortuño FM, Loucera C, Casimiro-Soriguer CS, Lepe JA, Camacho Martinez P, Merino Diaz L, de Salazar A, Chueca N, García F, Perez-Florido J, Dopazo J. Highly accurate whole-genome imputation of SARS-CoV-2 from partial or low-quality sequences. Gigascience. 10. PMID 34865008 DOI: 10.1093/gigascience/giab078  0.173
2022 Stojkovic M, Ortuño Guzmán FM, Han D, Stojkovic P, Dopazo J, Stankovic KM. Polystyrene nanoplastics affect transcriptomic and epigenomic signatures of human fibroblasts and derived induced pluripotent stem cells: Implications for human health. Environmental Pollution (Barking, Essex : 1987). 320: 120849. PMID 36509347 DOI: 10.1016/j.envpol.2022.120849  0.171
2020 Sundesha V, Garrayo J, Fernández JM, Codó L, Repchevsky D, Haas J, Altenhoff A, Dessimoz C, Cuesta I, Monzon S, López D, Florido JP, Dopazo J, Valencia A, Gelpi JL, et al. Scientific Communities in OpenEBench F1000research. 9. DOI: 10.7490/F1000Research.1117991.1  0.17
1995 Rodrigo MJ, Dopazo J. Evolutionary analysis of the picornavirus family. Journal of Molecular Evolution. 40: 362-71. PMID 7769613 DOI: 10.1007/BF00164022  0.168
2022 Gundogdu P, Loucera C, Alamo-Alvarez I, Dopazo J, Nepomuceno I. Integrating pathway knowledge with deep neural networks to reduce the dimensionality in single-cell RNA-seq data. Biodata Mining. 15: 1. PMID 34980200 DOI: 10.1186/s13040-021-00285-4  0.167
2013 Lorente-Galdos B, Medina I, Morcillo-Suarez C, Heredia T, Carreño-Torres A, Sangrós R, Alegre J, Pita G, Vellalta G, Malats N, Pisano DG, Dopazo J, Navarro A. Select your SNPs (SYSNPs): a web tool for automatic and massive selection of SNPs. International Journal of Data Mining and Bioinformatics. 6: 324-34. PMID 23155765 DOI: 10.1504/IJDMB.2012.049249  0.164
2023 Payá-Milans M, Peña-Chilet M, Loucera C, Esteban-Medina M, Dopazo J. Functional Profiling of Soft Tissue Sarcoma Using Mechanistic Models. International Journal of Molecular Sciences. 24. PMID 37834179 DOI: 10.3390/ijms241914732  0.161
2013 Méndez-Vidal C, González-Del Pozo M, Vela-Boza A, Santoyo-López J, López-Domingo FJ, Vázquez-Marouschek C, Dopazo J, Borrego S, Antiñolo G. Whole-exome sequencing identifies novel compound heterozygous mutations in USH2A in Spanish patients with autosomal recessive retinitis pigmentosa. Molecular Vision. 19: 2187-95. PMID 24227914  0.161
2023 Gundogdu P, Alamo I, Nepomuceno-Chamorro IA, Dopazo J, Loucera C. SigPrimedNet: A Signaling-Informed Neural Network for scRNA-seq Annotation of Known and Unknown Cell Types. Biology. 12. PMID 37106779 DOI: 10.3390/biology12040579  0.16
1995 Olivares I, Menéndez-Arias L, Rodríguez-Bernabé A, Martin MJ, Dopazo J, López-Galíndez C. Sequence analysis of HIV-1vif gene in Spanish isolates Virus Genes. 9: 283-288. DOI: 10.1007/BF01702884  0.16
1995 Escarmís C, Dopazo J, Dávila M, Palma EL, Domingo E. Large deletions in the 5'-untranslated region of foot-and-mouth disease virus of serotype C. Virus Research. 35: 155-67. PMID 7762289 DOI: 10.1016/0168-1702(94)00091-P  0.156
2021 Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, Singh V, Aghamiri SS, Acencio ML, Glaab E, Ruepp A, Fobo G, Montrone C, Brauner B, Frishman G, ... ... Dopazo J, et al. COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular Systems Biology. 17: e10387. PMID 34664389 DOI: 10.15252/msb.202110387  0.154
2021 Casimiro-Soriguer CS, Perez-Florido J, Fernandez-Rueda JL, Pedrosa-Corral I, Guillot-Sulay V, Lorusso N, Martinez-Gonzalez LJ, Navarro-Marí JM, Dopazo J, Sanbonmatsu-Gámez S. Phylogenetic Analysis of the 2020 West Nile Virus (WNV) Outbreak in Andalusia (Spain). Viruses. 13. PMID 34063166 DOI: 10.3390/v13050836  0.153
2023 Perez-Florido J, Casimiro-Soriguer CS, Ortuño F, Fernandez-Rueda JL, Aguado A, Lara M, Riazzo C, Rodriguez-Iglesias MA, Camacho-Martinez P, Merino-Diaz L, Pupo-Ledo I, de Salazar A, Viñuela L, Fuentes A, Chueca N, ... ... Dopazo J, et al. Detection of High Level of Co-Infection and the Emergence of Novel SARS CoV-2 Delta-Omicron and Omicron-Omicron Recombinants in the Epidemiological Surveillance of Andalusia. International Journal of Molecular Sciences. 24. PMID 36768752 DOI: 10.3390/ijms24032419  0.152
2009 Moreno-Manzano V, Rodríguez-Jiménez FJ, Aceña-Bonilla JL, Fustero-Lardíes S, Erceg S, Dopazo J, Montaner D, Stojkovic M, Sánchez-Puelles JM. FM19G11, a new hypoxia-inducible factor (HIF) modulator, affects stem cell differentiation status. The Journal of Biological Chemistry. 285: 1333-42. PMID 19897487 DOI: 10.1074/jbc.M109.008326  0.15
2015 Tárraga J, Pérez M, Orduña JM, Duato J, Medina I, Dopazo J. A parallel and sensitive software tool for methylation analysis on multicore platforms. Bioinformatics (Oxford, England). PMID 26069264 DOI: 10.1093/bioinformatics/btv357  0.15
2021 Martorell-Marugán J, López-Domínguez R, García-Moreno A, Toro-Domínguez D, Villatoro-García JA, Barturen G, Martín-Gómez A, Troule K, Gómez-López G, Al-Shahrour F, González-Rumayor V, Peña-Chilet M, Dopazo J, Sáez-Rodríguez J, Alarcón-Riquelme ME, et al. A comprehensive database for integrated analysis of omics data in autoimmune diseases. Bmc Bioinformatics. 22: 343. PMID 34167460 DOI: 10.1186/s12859-021-04268-4  0.15
1992 Igual JC, González-Bosch C, Dopazo J, Pérez-Ortín JE. Phylogenetic analysis of the thiolase family. Implications for the evolutionary origin of peroxisomes. Journal of Molecular Evolution. 35: 147-55. PMID 1354266 DOI: 10.1007/BF00183226  0.149
1996 Blanco-Urgoiti B, Sánchez F, Dopazo J, Ponz F. A strain-type clustering of potato virus Y based on the genetic distance between isolates calculated by RFLP analysis of the amplified coat protein gene. Archives of Virology. 141: 2425-42. PMID 9526547 DOI: 10.1007/bf01718641  0.147
2017 Olanda R, Pérez M, Orduña JM, Tárraga J, Dopazo J. A new parallel pipeline for DNA methylation analysis of long reads datasets. Bmc Bioinformatics. 18: 161. PMID 28274198 DOI: 10.1186/s12859-017-1574-3  0.146
2012 Sundaram AY, Kiron V, Dopazo J, Fernandes JM. Diversification of the expanded teleost-specific toll-like receptor family in Atlantic cod, Gadus morhua Bmc Evolutionary Biology. 12. PMID 23273344 DOI: 10.1186/1471-2148-12-256  0.143
2016 Tarraga J, Gallego A, Arnau V, Medina I, Dopazo J. HPG pore: an efficient and scalable framework for nanopore sequencing data. Bmc Bioinformatics. 17: 107. PMID 26921234 DOI: 10.1186/s12859-016-0966-0  0.143
2005 Alvarez S, Diaz-Uriarte R, Osorio A, Barroso A, Melchor L, Paz MF, Honrado E, Rodríguez R, Urioste M, Valle L, Díez O, Cigudosa JC, Dopazo J, Esteller M, Benitez J. A predictor based on the somatic genomic changes of the BRCA1/BRCA2 breast cancer tumors identifies the non-BRCA1/BRCA2 tumors with BRCA1 promoter hypermethylation. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 11: 1146-53. PMID 15709182  0.142
1996 Sánchez-Palomino S, Dopazo J, Olivares I, Martin MJ, López-Galíndez C. Primary genetic characterization of HIV-1 isolates from WHO-sponsored vaccine evaluation sites by the RNase-A mismatch method. Virus Research. 39: 251-9. PMID 8837888 DOI: 10.1016/0168-1702(95)00096-8  0.141
2018 Peña-Chilet M, Oltra S, Falco M, Dopazo J, Ribas G. PO-157 Estimation of functional effector genes reveals disease mechanisms in breast cancer in very young women Esmo Open. 3: A288. DOI: 10.1136/esmoopen-2018-EACR25.679  0.138
2016 Medina I, Tárraga J, Martínez H, Barrachina S, Castillo MI, Paschall J, Salavert-Torres J, Blanquer-Espert I, Hernández-García V, Quintana-Ortí ES, Dopazo J. Highly sensitive and ultrafast read mapping for RNA-seq analysis. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 23: 93-100. PMID 26740642 DOI: 10.1093/dnares/dsv039  0.136
2023 León M, Prieto J, Molina-Navarro MM, García-García F, Barneo-Muñoz M, Ponsoda X, Sáez R, Palau F, Dopazo J, Izpisua Belmonte JC, Torres J. Rapid degeneration of iPSC-derived motor neurons lacking Gdap1 engages a mitochondrial-sustained innate immune response. Cell Death Discovery. 9: 217. PMID 37393339 DOI: 10.1038/s41420-023-01531-w  0.136
2021 Mirzayi C, Renson A, Zohra F, Elsafoury S, Geistlinger L, Kasselman LJ, Eckenrode K, van de Wijgert J, Loughman A, Marques FZ, MacIntyre DA, Arumugam M, Azhar R, ... ... Dopazo J, et al. Reporting guidelines for human microbiome research: the STORMS checklist. Nature Medicine. PMID 34789871 DOI: 10.1038/s41591-021-01552-x  0.135
2015 Salavert J, Tomás A, Tárraga J, Medina I, Dopazo J, Blanquer I. Fast inexact mapping using advanced tree exploration on backward search methods. Bmc Bioinformatics. 16: 18. PMID 25626517 DOI: 10.1186/s12859-014-0438-3  0.134
2014 Tenorio J, Mansilla A, Valencia M, Martínez-Glez V, Romanelli V, Arias P, Castrejón N, Poletta F, Guillén-Navarro E, Gordo G, Mansilla E, García-Santiago F, González-Casado I, Vallespín E, Palomares M, ... ... Dopazo J, et al. A new overgrowth syndrome is due to mutations in RNF125. Human Mutation. 35: 1436-41. PMID 25196541 DOI: 10.1002/humu.22689  0.134
2006 Minguez P, Al-Shahrour F, Dopazo J. A function-centric approach to the biological interpretation of microarray time-series. Genome Informatics. International Conference On Genome Informatics. 17: 57-66. PMID 17503379  0.134
2022 Casimiro-Soriguer CS, Loucera C, Peña-Chilet M, Dopazo J. Towards a metagenomics machine learning interpretable model for understanding the transition from adenoma to colorectal cancer. Scientific Reports. 12: 450. PMID 35013454 DOI: 10.1038/s41598-021-04182-y  0.128
1995 Trelles-Salazar O, Zapata EL, Dopazo J, Coulson AF, Carazo JM. An image-processing approach to dotplots: an X-Window-based program for interactive analysis of dotplots derived from sequence and structural data. Computer Applications in the Biosciences : Cabios. 11: 301-8. PMID 7583699 DOI: 10.1093/bioinformatics/11.3.301  0.127
2008 Saar K, Beck A, Bihoreau MT, Birney E, Brocklebank D, Chen Y, Cuppen E, Demonchy S, Dopazo J, Flicek P, Foglio M, Fujiyama A, Gut IG, Gauguier D, et al. SNP and haplotype mapping for genetic analysis in the rat. Nature Genetics. 40: 560-6. PMID 18443594 DOI: 10.1038/Ng.124  0.126
2019 Díez-Fuertes F, Erick de la Torre-Tarazona H, Calonge E, Pernas M, Bermejo M, García-Pérez J, Álvarez A, Capa L, García-García F, Saumoy M, Riera M, Boland-Auge A, López-Galíndez C, Lathrop M, Dopazo J, et al. Association of a single nucleotide polymorphism in ubxn6 gene with long term non progression phenotype in hiv-positive individuals. Clinical Microbiology and Infection : the Official Publication of the European Society of Clinical Microbiology and Infectious Diseases. PMID 31158522 DOI: 10.1016/j.cmi.2019.05.015  0.12
2024 Mavillard F, Perez-Florido J, Ortuño FM, Valladares A, Álvarez-Villegas ML, Roldán G, Carmona R, Soriano M, Susarte S, Fuentes P, López-López D, Nuñez-Negrillo AM, Carvajal A, Morgado Y, Arteaga D, ... ... Dopazo J, et al. IRPVS, the Iberian Roma genetic database. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 38548101 DOI: 10.1016/j.jgg.2024.03.006  0.12
2024 Casimiro-Soriguer CS, Perez-Florido J, Lara M, Camacho-Martinez P, Merino-Diaz L, Pupo-Ledo I, de Salazar A, Fuentes A, Viñuela L, Chueca N, Martinez-Martinez L, Lorusso N, Lepe JA, Dopazo J, Garcia F. Molecular and phylogenetic characterization of the monkeypox outbreak in the South of Spain. Health Science Reports. 7: e1965. PMID 38524774 DOI: 10.1002/hsr2.1965  0.12
2024 Esteban-Medina M, de la Oliva Roque VM, Herráiz-Gil S, Peña-Chilet M, Dopazo J, Loucera C. drexml: A command line tool and Python package for drug repurposing. Computational and Structural Biotechnology Journal. 23: 1129-1143. PMID 38510973 DOI: 10.1016/j.csbj.2024.02.027  0.12
2024 Esteban-Medina M, Loucera C, Rian K, Velasco S, Olivares-González L, Rodrigo R, Dopazo J, Peña-Chilet M. The mechanistic functional landscape of retinitis pigmentosa: a machine learning-driven approach to therapeutic target discovery. Journal of Translational Medicine. 22: 139. PMID 38321543 DOI: 10.1186/s12967-024-04911-7  0.12
2020 León C, García-García F, Llames S, García-Pérez E, Carretero M, Arriba MDC, Dopazo J, Del Río M, Escámez MJ, Martínez-Santamaría L. Transcriptomic Analysis of a Diabetic Skin-Humanized Mouse Model Dissects Molecular Pathways Underlying the Delayed Wound Healing Response. Genes. 12. PMID 33396192 DOI: 10.3390/genes12010047  0.12
2016 Puchades-Carrasco L, Jantus-Lewintre E, Pérez-Rambla C, García-García F, Lucas R, Calabuig S, Blasco A, Dopazo J, Camps C, Pineda-Lucena A. Serum metabolomic profiling facilitates the non-invasive identification of metabolic biomarkers associated with the onset and progression of non-small cell lung cancer Oncotarget. 7: 12904-12916. DOI: 10.18632/oncotarget.7354  0.119
2022 Puerto-Camacho P, Díaz-Martín J, Olmedo-Pelayo J, Bolado-Carrancio A, Salguero-Aranda C, Jordán-Pérez C, Esteban-Medina M, Álamo-Álvarez I, Delgado-Bellido D, Lobo-Selma L, Dopazo J, Sastre A, Alonso J, Grünewald TGP, Bernabeu C, et al. Endoglin and MMP14 Contribute to Ewing Sarcoma Spreading by Modulation of Cell-Matrix Interactions. International Journal of Molecular Sciences. 23. PMID 35955799 DOI: 10.3390/ijms23158657  0.118
2020 García-León FJ, Villegas-Portero R, Goicoechea-Salazar JA, Muñoyerro-Muñiz D, Dopazo J. [Impact assessment on data protection in research projects]. Gaceta Sanitaria. 34: 521-523. PMID 31980148 DOI: 10.1016/j.gaceta.2019.10.006  0.114
2023 López-López D, Roldán G, Fernández-Rueda JL, Bostelmann G, Carmona R, Aquino V, Perez-Florido J, Ortuño F, Pita G, Núñez-Torres R, González-Neira A, Peña-Chilet M, Dopazo J. A crowdsourcing database for the copy-number variation of the Spanish population. Human Genomics. 17: 20. PMID 36894999 DOI: 10.1186/s40246-023-00466-8  0.113
2015 Luzón-Toro B, Bleda M, Navarro E, García-Alonso L, Ruiz-Ferrer M, Medina I, Martín-Sánchez M, Gonzalez CY, Fernández RM, Torroglosa A, Antiñolo G, Dopazo J, Borrego S. Identification of epistatic interactions through genome-wide association studies in sporadic medullary and juvenile papillary thyroid carcinomas Bmc Medical Genomics. DOI: 10.1186/s12920-015-0160-7  0.112
1998 Blanco-Urgoiti B, Sánchez F, Pérez de San Román C, Dopazo J, Ponz F. Potato virus Y group C isolates are a homogeneous pathotype but two different genetic strains. The Journal of General Virology. 79: 2037-42. PMID 9714255 DOI: 10.1099/0022-1317-79-8-2037  0.112
2007 Marti-Renom MA, Pieper U, Madhusudhan MS, Rossi A, Eswar N, Davis FP, Al-Shahrour F, Dopazo J, Sali A. DBAli tools: mining the protein structure space. Nucleic Acids Research. 35: W393-7. PMID 17478513 DOI: 10.1093/Nar/Gkm236  0.112
2021 Dopazo J, Maya-Miles D, García F, Lorusso N, Calleja MÁ, Pareja MJ, López-Miranda J, Rodríguez-Baño J, Padillo J, Túnez I, Romero-Gómez M. Implementing Personalized Medicine in COVID-19 in Andalusia: An Opportunity to Transform the Healthcare System. Journal of Personalized Medicine. 11. PMID 34073493 DOI: 10.3390/jpm11060475  0.111
2014 Tárraga J, Arnau V, Martínez H, Moreno R, Cazorla D, Salavert-Torres J, Blanquer-Espert I, Dopazo J, Medina I. Acceleration of short and long DNA read mapping without loss of accuracy using suffix array. Bioinformatics (Oxford, England). 30: 3396-8. PMID 25143289 DOI: 10.1093/bioinformatics/btu553  0.111
2023 Łabaj PP, Dopazo J, Xiao W, Kreil DP. Editorial: Critical assessment of massive data analysis (CAMDA) annual conference 2021. Frontiers in Genetics. 14: 1154398. PMID 36873943 DOI: 10.3389/fgene.2023.1154398  0.111
2021 Martin-Broto J, Lopez-Alvarez M, Moura DS, Ramos R, Collini P, Romagosa C, Bagué S, Renne SL, Barisella M, Velasco V, Coindre JM, Lopez-Lopez D, Dopazo J, Gambarotti M, Braglia L, et al. Predictive Value of MRP-1 in Localized High-Risk Soft Tissue Sarcomas: A Translational Research Associated to ISG-STS 1001 Randomized Phase III Trial. Molecular Cancer Therapeutics. PMID 34552008 DOI: 10.1158/1535-7163.MCT-21-0315  0.105
2024 Niarakis A, Ostaszewski M, Mazein A, Kuperstein I, Kutmon M, Gillespie ME, Funahashi A, Acencio ML, Hemedan A, Aichem M, Klein K, Czauderna T, Burtscher F, Yamada TG, Hiki Y, ... ... Dopazo J, et al. Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches. Frontiers in Immunology. 14: 1282859. PMID 38414974 DOI: 10.3389/fimmu.2023.1282859  0.098
1993 Rojas JM, Dopazo J, Martín-Blanco E, López-Galíndez C, Tabarés E. Analysis of genetic variability of populations of herpes simplex viruses. Virus Research. 28: 249-61. PMID 8394041 DOI: 10.1016/0168-1702(93)90025-I  0.097
2023 Corrales P, Martin-Taboada M, Vivas-García Y, Torres L, Ramirez-Jimenez L, Lopez Y, Horrillo D, Vila-Bedmar R, Barber-Cano E, Izquierdo-Lahuerta A, Peña-Chilet M, Martínez C, Dopazo J, Ros M, Medina-Gomez G. microRNAs-mediated regulation of insulin signaling in white adipose tissue during aging: Role of caloric restriction. Aging Cell. e13919. PMID 37403257 DOI: 10.1111/acel.13919  0.094
2023 Sola-García A, Cáliz-Molina MÁ, Espadas I, Petr M, Panadero-Morón C, González-Morán D, Martín-Vázquez ME, Narbona-Pérez ÁJ, López-Noriega L, Martínez-Corrales G, López-Fernández-Sobrino R, Carmona-Marin LM, Martínez-Force E, Yanes O, Vinaixa M, ... ... Dopazo J, et al. Metabolic reprogramming by Acly inhibition using SB-204990 alters glucoregulation and modulates molecular mechanisms associated with aging. Communications Biology. 6: 250. PMID 36890357 DOI: 10.1038/s42003-023-04625-4  0.093
2023 Çubuk C, Loucera C, Peña-Chilet M, Dopazo J. Crosstalk between Metabolite Production and Signaling Activity in Breast Cancer. International Journal of Molecular Sciences. 24. PMID 37108611 DOI: 10.3390/ijms24087450  0.092
1995 de la Fraga LG, Dopazo J, Carazo J. Confidence limits for resolution estimation in image averaging by random subsampling Ultramicroscopy. 60: 385-391. DOI: 10.1016/0304-3991(95)00080-1  0.09
2023 Chaves-Blanco L, Salazar A, Fuentes A, Viñuela L, Perez-Florido J, Dopazo J, García F. Evaluation of a combined detection of SARS-CoV-2 and its variants using real-time allele-specific PCR strategy: an advantage for clinical practice. Epidemiology and Infection. 1-16. PMID 37997654 DOI: 10.1017/S095026882300184X  0.085
2021 Méndez-Salazar EO, Vázquez-Mellado J, Casimiro-Soriguer CS, Dopazo J, Çubuk C, Zamudio-Cuevas Y, Francisco-Balderas A, Martínez-Flores K, Fernández-Torres J, Lozada-Pérez C, Pineda C, Sánchez-González A, Silveira LH, Burguete-García AI, Orbe-Orihuela C, et al. Taxonomic variations in the gut microbiome of gout patients with and without tophi might have a functional impact on urate metabolism. Molecular Medicine (Cambridge, Mass.). 27: 50. PMID 34030623 DOI: 10.1186/s10020-021-00311-5  0.078
2022 Loucera C, Perez-Florido J, Casimiro-Soriguer CS, Ortuño FM, Carmona R, Bostelmann G, Martínez-González LJ, Muñoyerro-Muñiz D, Villegas R, Rodriguez-Baño J, Romero-Gomez M, Lorusso N, Garcia-León J, Navarro-Marí JM, Camacho-Martinez P, ... ... Dopazo J, et al. Assessing the Impact of SARS-CoV-2 Lineages and Mutations on Patient Survival. Viruses. 14. PMID 36146700 DOI: 10.3390/v14091893  0.077
1994 Rodríguez A, Dopazo J, Sáiz JC, Sobrino F. Immunogenicity of non-structural proteins of foot-and-mouth disease virus: differences between infected and vaccinated swine. Archives of Virology. 136: 123-31. PMID 8002780 DOI: 10.1007/BF01538822  0.076
2012 Koziol A, Gonzalo P, Mota A, Pollán Á, Lorenzo C, Colomé N, Montaner D, Dopazo J, Arribas J, Canals F, Arroyo AG. The protease MT1-MMP drives a combinatorial proteolytic program in activated endothelial cells. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 26: 4481-94. PMID 22859368 DOI: 10.1096/fj.12-205906  0.072
2021 Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, Singh V, Aghamiri SS, Acencio ML, Glaab E, Ruepp A, Fobo G, Montrone C, Brauner B, Frishman G, ... ... Dopazo J, et al. COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular Systems Biology. 17: e10851. PMID 34939300 DOI: 10.15252/msb.202110851  0.069
2019 Martin-Broto J, Stacchiotti S, Lopez-Pousa A, Redondo A, Bernabeu D, de Alava E, Casali PG, Italiano A, Gutierrez A, Moura DS, Peña-Chilet M, Diaz-Martin J, Biscuola M, Taron M, Collini P, ... ... Dopazo J, et al. Pazopanib for treatment of advanced malignant and dedifferentiated solitary fibrous tumour: a multicentre, single-arm, phase 2 trial. The Lancet. Oncology. 20: 134-144. PMID 30578023 DOI: 10.1016/S1470-2045(18)30676-4  0.062
2023 Loucera C, Carmona R, Esteban-Medina M, Bostelmann G, Muñoyerro-Muñiz D, Villegas R, Peña-Chilet M, Dopazo J. Real-world evidence with a retrospective cohort of 15,968 COVID-19 hospitalized patients suggests 21 new effective treatments. Virology Journal. 20: 226. PMID 37803348 DOI: 10.1186/s12985-023-02195-9  0.061
2015 Carretero M, Guerrero-Aspizua S, Illera N, Galvez V, Navarro M, García-García F, Dopazo J, Jorcano JL, Larcher F, Del Rio M. Differential Features Between Chronic Skin Inflammatory Diseases Revealed in Skin-Humanized Psoriasis and Atopic Dermatitis Mouse Models. The Journal of Investigative Dermatology. PMID 26398345 DOI: 10.1038/jid.2015.362  0.06
2006 Dopazo J. Bioinformatics and cancer: an essential alliance Clinical and Translational Oncology. 8: 409-415. DOI: 10.1007/S12094-006-0194-6  0.059
2016 Maroñas O, Latorre A, Dopazo J, Pirmohamed M, Rodríguez-Antona C, Siest G, Carracedo Á, Llerena A. Progress in pharmacogenetics: Consortiums and new strategies Drug Metabolism and Personalized Therapy. 31: 17-23. DOI: 10.1515/dmpt-2015-0039  0.058
2020 Martin-Broto J, Hindi N, Grignani G, Martinez-Trufero J, Redondo A, Valverde C, Stacchiotti S, Lopez-Pousa A, D'Ambrosio L, Gutierrez A, Perez-Vega H, Encinas-Tobajas V, de Alava E, Collini P, Peña-Chilet M, ... Dopazo J, et al. Nivolumab and sunitinib combination in advanced soft tissue sarcomas: a multicenter, single-arm, phase Ib/II trial. Journal For Immunotherapy of Cancer. 8. PMID 33203665 DOI: 10.1136/jitc-2020-001561  0.051
2021 Torrent-Vernetta A, Gaboli M, Castillo-Corullón S, Mondéjar-López P, Sanz Santiago V, Costa-Colomer J, Osona B, Torres-Borrego J, de la Serna-Blázquez O, Bellón Alonso S, Caro Aguilera P, Gimeno-Díaz de Atauri Á, Valenzuela Soria A, Ayats R, Martin de Vicente C, ... ... Dopazo J, et al. Incidence and Prevalence of Children's Diffuse Lung Disease in Spain. Archivos De Bronconeumologia. 58: 22-29. PMID 35249699 DOI: 10.1016/j.arbres.2021.06.001  0.05
1998 Núñez JI, Blanco E, Hernández T, Dopazo J, Sobrino F. RT-PCR in foot-and-mouth. The Veterinary Quarterly. 20: 34-36. PMID 22077295 DOI: 10.1080/01652176.1998.9694963  0.05
2023 Loucera C, Carmona R, Bostelmann G, Muñoyerro-Muñiz D, Villegas R, Gonzalez-Manzanares R, Dopazo J, Anguita M. Evidence of the association between increased use of direct oral anticoagulants and a reduction in the rate of atrial fibrillation-related stroke and major bleeding at the population level (2012-2019). Medicina Clinica. PMID 37989706 DOI: 10.1016/j.medcli.2023.10.008  0.042
2021 Loucera C, Peña-Chilet M, Esteban-Medina M, Muñoyerro-Muñiz D, Villegas R, Lopez-Miranda J, Rodriguez-Baño J, Túnez I, Bouillon R, Dopazo J, Quesada Gomez JM. Real world evidence of calcifediol or vitamin D prescription and mortality rate of COVID-19 in a retrospective cohort of hospitalized Andalusian patients. Scientific Reports. 11: 23380. PMID 34862422 DOI: 10.1038/s41598-021-02701-5  0.04
2020 Loucera C, Esteban-Medina M, Rian K, Falco MM, Dopazo J, Peña-Chilet M. Drug repurposing for COVID-19 using machine learning and mechanistic models of signal transduction circuits related to SARS-CoV-2 infection. Signal Transduction and Targeted Therapy. 5: 290. PMID 33311438 DOI: 10.1038/s41392-020-00417-y  0.036
1998 Ceron C, Dopazo J, Zapata E, Carazo J, Trelles O. Parallel implementation of DNAml program on message-passing architectures Parallel Computing. 24: 701-716. DOI: 10.1016/S0167-8191(98)00002-7  0.035
2015 Pozo MGd, Bravo-Gil N, Méndez-Vidal C, Montero-de-Espinosa I, Millán JM, Dopazo J, Borrego S, Antiñolo G. Re-evaluation casts doubt on the pathogenicity of homozygous USH2A p.C759F American Journal of Medical Genetics, Part A. 167: 1597-1600. DOI: 10.1002/ajmg.a.37003  0.03
1994 Rojas J, Dopazo J, Nájera I, Sánchez-Palomino S, Olivares I, Martin M, Bernal A, Saiz A, Nájera R, López-Galíndez C. Molecular epidemiology of HIV-1 in Madrid Virus Research. 31: 331-342. DOI: 10.1016/0168-1702(94)90026-4  0.025
2012 Nanka O, Krejci E, Pesevski Z, Sedmera D, Smart N, Rossdeutsch A, Dube KN, Riegler J, Price AN, Taylor A, Muthurangu V, Turner M, Lythgoe MF, Riley PR, Kryvorot S, ... ... Dopazo J, et al. Poster session 3 Cardiovascular Research. 93: S92-S127. DOI: 10.1093/Cvr/Cvr336  0.014
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