Libusha Kelly - Publications

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26/48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2013 Kelly L, Ding H, Huang KH, Osburne MS, Chisholm SW. Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent. The Isme Journal. 7: 1827-41. PMID 23657361 DOI: 10.1038/Ismej.2013.58  0.56
2013 Labrie SJ, Frois-Moniz K, Osburne MS, Kelly L, Roggensack SE, Sullivan MB, Gearin G, Zeng Q, Fitzgerald M, Henn MR, Chisholm SW. Genomes of marine cyanopodoviruses reveal multiple origins of diversity. Environmental Microbiology. 15: 1356-76. PMID 23320838 DOI: 10.1111/1462-2920.12053  0.56
2013 Malmstrom RR, Rodrigue S, Huang KH, Kelly L, Kern SE, Thompson A, Roggensack S, Berube PM, Henn MR, Chisholm SW. Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis. The Isme Journal. 7: 184-98. PMID 22895163 DOI: 10.1038/Ismej.2012.89  0.56
2012 Kelly L, Huang KH, Ding H, Chisholm SW. ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage. Nucleic Acids Research. 40: D632-40. PMID 22102570 DOI: 10.1093/Nar/Gkr1022  0.56
2011 Thompson LR, Zeng Q, Kelly L, Huang KH, Singer AU, Stubbe J, Chisholm SW. Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism. Proceedings of the National Academy of Sciences of the United States of America. 108: E757-64. PMID 21844365 DOI: 10.1073/Pnas.1102164108  0.56
2011 Kelly L, Fukushima H, Karchin R, Gow JM, Chinn LW, Pieper U, Segal MR, Kroetz DL, Sali A. Letter to the editor Protein Science. 20: 4-5. DOI: 10.1002/Pro.555  0.56
2010 Kelly L, Fukushima H, Karchin R, Gow JM, Chinn LW, Pieper U, Segal MR, Kroetz DL, Sali A. Functional hot spots in human ATP-binding cassette transporter nucleotide binding domains. Protein Science : a Publication of the Protein Society. 19: 2110-21. PMID 20799350 DOI: 10.1002/Pro.491  0.56
2010 Sullivan MB, Huang KH, Ignacio-Espinoza JC, Berlin AM, Kelly L, Weigele PR, DeFrancesco AS, Kern SE, Thompson LR, Young S, Yandava C, Fu R, Krastins B, Chase M, Sarracino D, et al. Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments. Environmental Microbiology. 12: 3035-56. PMID 20662890 DOI: 10.1111/J.1462-2920.2010.02280.X  0.56
2010 Li B, Sher D, Kelly L, Shi Y, Huang K, Knerr PJ, Joewono I, Rusch D, Chisholm SW, van der Donk WA. Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America. 107: 10430-5. PMID 20479271 DOI: 10.1073/Pnas.0913677107  0.56
2010 Osburne MS, Holmbeck BM, Frias-Lopez J, Steen R, Huang K, Kelly L, Coe A, Waraska K, Gagne A, Chisholm SW. UV hyper-resistance in Prochlorococcus MED4 results from a single base pair deletion just upstream of an operon encoding nudix hydrolase and photolyase. Environmental Microbiology. 12: 1978-88. PMID 20345942 DOI: 10.1111/J.1462-2920.2010.02203.X  0.56
2010 Henn MR, Sullivan MB, Stange-Thomann N, Osburne MS, Berlin AM, Kelly L, Yandava C, Kodira C, Zeng Q, Weiand M, Sparrow T, Saif S, Giannoukos G, Young SK, Nusbaum C, et al. Analysis of high-throughput sequencing and annotation strategies for phage genomes. Plos One. 5: e9083. PMID 20140207 DOI: 10.1371/Journal.Pone.0009083  0.56
2010 Schlessinger A, Matsson P, Shima JE, Pieper U, Yee SW, Kelly L, Apeltsin L, Stroud RM, Ferrin TE, Giacomini KM, Sali A. Comparison of human solute carriers. Protein Science : a Publication of the Protein Society. 19: 412-28. PMID 20052679 DOI: 10.1002/Pro.320  0.56
2009 Sullivan MB, Krastins B, Hughes JL, Kelly L, Chase M, Sarracino D, Chisholm SW. The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial 'mobilome'. Environmental Microbiology. 11: 2935-51. PMID 19840100 DOI: 10.1111/J.1462-2920.2009.02081.X  0.56
2009 Kelly L, Pieper U, Eswar N, Hays FA, Li M, Roe-Zurz Z, Kroetz DL, Giacomini KM, Stroud RM, Sali A. A survey of integral alpha-helical membrane proteins. Journal of Structural and Functional Genomics. 10: 269-80. PMID 19760129 DOI: 10.1007/S10969-009-9069-8  0.56
2009 Pieper U, Chiang R, Seffernick JJ, Brown SD, Glasner ME, Kelly L, Eswar N, Sauder JM, Bonanno JB, Swaminathan S, Burley SK, Zheng X, Chance MR, Almo SC, Gerlt JA, et al. Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies. Journal of Structural and Functional Genomics. 10: 107-25. PMID 19219566 DOI: 10.1007/S10969-008-9056-5  0.56
2009 Li M, Hays FA, Roe-Zurz Z, Vuong L, Kelly L, Ho CM, Robbins RM, Pieper U, O'Connell JD, Miercke LJ, Giacomini KM, Sali A, Stroud RM. Selecting optimum eukaryotic integral membrane proteins for structure determination by rapid expression and solubilization screening. Journal of Molecular Biology. 385: 820-30. PMID 19061901 DOI: 10.1016/J.Jmb.2008.11.021  0.56
2009 Hays FA, Roe-Zurz Z, Li M, Kelly L, Gruswitz F, Sali A, Stroud RM. Ratiocinative screen of eukaryotic integral membrane protein expression and solubilization for structure determination. Journal of Structural and Functional Genomics. 10: 9-16. PMID 19031011 DOI: 10.1007/S10969-008-9046-7  0.56
2009 Pieper U, Eswar N, Webb BM, Eramian D, Kelly L, Barkan DT, Carter H, Mankoo P, Karchin R, Marti-Renom MA, Davis FP, Sali A. MODBASE, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Research. 37: D347-54. PMID 18948282 DOI: 10.1093/nar/gkn791  0.56
2007 Kelly L, Karchin R, Sali A. Protein interactions and disease phenotypes in the ABC transporter superfamily. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 51-63. PMID 17990484  0.56
2007 Soranzo N, Kelly L, Martinian L, Burley MW, Thom M, Sali A, Kroetz DL, Goldstein DB, Sisodiya SM. Lack of support for a role for RLIP76 (RALBP1) in response to treatment or predisposition to epilepsy. Epilepsia. 48: 674-83. PMID 17437410 DOI: 10.1111/J.1528-1167.2007.00926.X  0.56
2006 Nguyen TD, Gow JM, Chinn LW, Kelly L, Jeong H, Huang CC, Stryke D, Kawamoto M, Johns SJ, Carlson E, Taylor T, Ferrin TE, Sali A, Giacomini KM, Kroetz DL. PharmGKB submission update: IV. PMT submissions of genetic variations in ATP-Binding cassette transporters to the PharmGKB network. Pharmacological Reviews. 58: 1-2. PMID 16507877 DOI: 10.1124/Pr.58.1.1  0.56
2006 Pieper U, Eswar N, Davis FP, Braberg H, Madhusudhan MS, Rossi A, Marti-Renom M, Karchin R, Webb BM, Eramian D, Shen MY, Kelly L, Melo F, Sali A. MODBASE: a database of annotated comparative protein structure models and associated resources. Nucleic Acids Research. 34: D291-5. PMID 16381869 DOI: 10.1093/nar/gkj059  0.56
2005 Karchin R, Diekhans M, Kelly L, Thomas DJ, Pieper U, Eswar N, Haussler D, Sali A. LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources. Bioinformatics (Oxford, England). 21: 2814-20. PMID 15827081 DOI: 10.1093/Bioinformatics/Bti442  0.56
2005 Karchin R, Kelly L, Sali A. Improving functional annotation of no n-s yno no mo us s nps with information theory Proceedings of the Pacific Symposium On Biocomputing 2005, Psb 2005. 397-408. PMID 15759645  0.56
2001 Olivier M, Bustos VI, Levy MR, Smick GA, Moreno I, Bushard JM, Almendras AA, Sheppard K, Zierten DL, Aggarwal A, Carlson CS, Foster BD, Vo N, Kelly L, Liu X, et al. Complex high-resolution linkage disequilibrium and haplotype patterns of single-nucleotide polymorphisms in 2.5 Mb of sequence on human chromosome 21. Genomics. 78: 64-72. PMID 11707074 DOI: 10.1006/Geno.2001.6646  0.56
2001 Olivier M, Aggarwal A, Allen J, Almendras AA, Bajorek ES, Beasley EM, Brady SD, Bushard JM, Bustos VI, Chu A, Chung TR, De Witte A, Denys ME, Dominguez R, Fang NY, ... ... Kelly L, et al. A high-resolution radiation hybrid map of the human genome draft sequence. Science (New York, N.Y.). 291: 1298-302. PMID 11181994 DOI: 10.1126/Science.1057437  0.56
Low-probability matches
2014 Biller SJ, Berube PM, Berta-Thompson JW, Kelly L, Roggensack SE, Awad L, Roache-Johnson KH, Ding H, Giovannoni SJ, Rocap G, Moore LR, Chisholm SW. Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus. Scientific Data. 1: 140034. PMID 25977791 DOI: 10.1038/Sdata.2014.34  0.28
2021 Htwe P, Aung HH, Kywe B, Niang PT, Oo TS, Monhandas S, Kelly L, Goldman DL. Endotoxin acts synergistically with C. difficile toxin B to increase IL-1 β production: A potential role for the intestinal biome in modifying the severity of C. difficile colitis. The Journal of Infectious Diseases. PMID 33780547 DOI: 10.1093/infdis/jiab165  0.01
2021 De A, Chen W, Li H, Wright JR, Lamendella R, Lukin DJ, Szymczak WA, Sun K, Kelly L, Ghosh S, Kearns DB, He Z, Jobin C, Luo X, Byju A, et al. Bacterial Swarmers Enriched during Intestinal Stress Ameliorate Damage. Gastroenterology. PMID 33741315 DOI: 10.1053/j.gastro.2021.03.017  0.01
2021 Fels JM, Khan S, Forster R, Skalina KA, Sirichand S, Fox AS, Bergman A, Mitchell WB, Wolgast LR, Szymczak WA, Bortz RH, Dieterle ME, Florez C, Haslwanter D, Jangra RK, ... ... Kelly L, et al. Genomic surveillance of SARS-CoV-2 in the Bronx enables clinical and epidemiological inference. Medrxiv : the Preprint Server For Health Sciences. PMID 33594384 DOI: 10.1101/2021.02.08.21250641  0.01
2020 Kelly L, Wolfson SJ. Finding phenazine. Elife. 9. PMID 33108273 DOI: 10.7554/eLife.62983  0.01
2020 Chang WK, VanInsberghe D, Kelly L. Topological analysis reveals state transitions in human gut and marine bacterial communities. Npj Biofilms and Microbiomes. 6: 41. PMID 33057043 DOI: 10.1038/s41522-020-00145-9  0.01
2020 Khan S, Hauptman R, Kelly L. Engineering the Microbiome to Prevent Adverse Events: Challenges and Opportunities. Annual Review of Pharmacology and Toxicology. PMID 33049161 DOI: 10.1146/annurev-pharmtox-031620-031509  0.01
2020 Xavier JB, Young VB, Skufca J, Ginty F, Testerman T, Pearson AT, Macklin P, Mitchell A, Shmulevich I, Xie L, Caporaso JG, Crandall KA, Simone NL, Godoy-Vitorino F, Griffin TJ, ... ... Kelly L, et al. The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View. Trends in Cancer. 6: 192-204. PMID 32101723 DOI: 10.1016/J.Trecan.2020.01.004  0.01
2020 Khan S, Kelly L. Multiclass Disease Classification from Microbial Whole-Community Metagenomes. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 25: 55-66. PMID 31797586  0.01
2019 Hitchings R, Kelly L. Drug Metabolism as a Community Effort. Cell Metabolism. 30: 235-237. PMID 31390549 DOI: 10.1016/j.cmet.2019.07.005  0.01
2019 Kelly L. Harnessing the Microbiome to Improve Drug Therapy. Clinical Pharmacology and Therapeutics. 106: 287-289. PMID 31355459 DOI: 10.1002/cpt.1510  0.01
2019 Guthrie L, Wolfson S, Kelly L. The human gut chemical landscape predicts microbe-mediated biotransformation of foods and drugs. Elife. 8. PMID 31184303 DOI: 10.7554/eLife.42866  0.01
2019 Hitchings R, Kelly L. Predicting and Understanding the Human Microbiome's Impact on Pharmacology. Trends in Pharmacological Sciences. 40: 495-505. PMID 31171383 DOI: 10.1016/j.tips.2019.04.014  0.01
2019 Guthrie L, Kelly L. Bringing microbiome-drug interaction research into the clinic. Ebiomedicine. PMID 31151933 DOI: 10.1016/j.ebiom.2019.05.009  0.01
2019 Khan S, Kelly L. Fireworks: Reproducible Machine Learning and Preprocessing with PyTorch Journal of Open Source Software. 4: 1478. DOI: 10.21105/JOSS.01478  0.01
2018 Berube PM, Biller SJ, Hackl T, Hogle SL, Satinsky BM, Becker JW, Braakman R, Collins SB, Kelly L, Berta-Thompson J, Coe A, Bergauer K, Bouman HA, Browning TJ, De Corte D, et al. Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments. Scientific Data. 5: 180154. PMID 30179231 DOI: 10.1038/Sdata.2018.154  0.24
2018 Kauffman KM, Brown JM, Sharma RS, VanInsberghe D, Elsherbini J, Polz M, Kelly L. Viruses of the Nahant Collection, characterization of 251 marine Vibrionaceae viruses. Scientific Data. 5: 180114. PMID 29969110 DOI: 10.1038/sdata.2018.114  0.01
2018 Kauffman KM, Hussain FA, Yang J, Arevalo P, Brown JM, Chang WK, VanInsberghe D, Elsherbini J, Sharma RS, Cutler MB, Kelly L, Polz MF. A major lineage of non-tailed dsDNA viruses as unrecognized killers of marine bacteria. Nature. PMID 29364876 DOI: 10.1038/nature25474  0.01
2017 Guthrie L, Gupta S, Daily J, Kelly L. Human microbiome signatures of differential colorectal cancer drug metabolism. Npj Biofilms and Microbiomes. 3: 27. PMID 29104759 DOI: 10.1038/s41522-017-0034-1  0.01
2017 Downs IA, Aroniadis OC, Kelly L, Brandt LJ. Postinfection Irritable Bowel Syndrome: The Links Between Gastroenteritis, Inflammation, the Microbiome, and Functional Disease. Journal of Clinical Gastroenterology. PMID 28885302 DOI: 10.1097/MCG.0000000000000924  0.01
2015 Wallace BD, Roberts AB, Pollet RM, Ingle JD, Biernat KA, Pellock SJ, Venkatesh MK, Guthrie L, O'Neal SK, Robinson SJ, Dollinger M, Figueroa E, McShane SR, Cohen RD, Jin J, ... Kelly L, et al. Structure and Inhibition of Microbiome β-Glucuronidases Essential to the Alleviation of Cancer Drug Toxicity. Chemistry & Biology. 22: 1238-49. PMID 26364932 DOI: 10.1016/J.Chembiol.2015.08.005  0.01
2015 Smith VH, Rubinstein RJ, Park S, Kelly L, Klepac-Ceraj V. Microbiology and ecology are vitally important to premedical curricula. Evolution, Medicine, and Public Health. 2015: 179-92. PMID 26198190 DOI: 10.1093/emph/eov014  0.01
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