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Sean M. Gibbons, Ph.D. - Publications

Affiliations: 
2018- Institute for Systems Biology, Seattle, WA, United States 
 2019- Department of Bioengineering University of Washington, Seattle, Seattle, WA 
Area:
Ecology, Microbiology, Computational Biology, Systems Biology, Evolution
Website:
https://gibbons.isbscience.org/
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85 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Johnson-Martínez JP, Diener C, Levine AE, Wilmanski T, Suskind DL, Ralevski A, Hadlock J, Magis AT, Hood L, Rappaport N, Gibbons SM. Aberrant bowel movement frequencies coincide with increased microbe-derived blood metabolites associated with reduced organ function. Cell Reports. Medicine. 5: 101646. PMID 39019013 DOI: 10.1016/j.xcrm.2024.101646  0.683
2024 Kane AE, Chellappa K, Schultz MB, Arnold M, Li J, Amorim J, Diener C, Zhu D, Mitchell SJ, Griffin P, Tian X, Petty C, Conway R, Walsh K, Shelerud L, ... ... Gibbons SM, et al. Long-term NMN treatment increases lifespan and healthspan in mice in a sex dependent manner. Biorxiv : the Preprint Server For Biology. PMID 38979132 DOI: 10.1101/2024.06.21.599604  0.638
2024 Quinn-Bohmann N, Wilmanski T, Sarmiento KR, Levy L, Lampe JW, Gurry T, Rappaport N, Ostrem EM, Venturelli OS, Diener C, Gibbons SM. Microbial community-scale metabolic modelling predicts personalized short-chain fatty acid production profiles in the human gut. Nature Microbiology. 9: 1700-1712. PMID 38914826 DOI: 10.1038/s41564-024-01728-4  0.734
2024 Sarmiento KR, Carr A, Diener C, Locey KJ, Gibbons SM. Island biogeography theory provides a plausible explanation for why larger vertebrates and taller humans have more diverse gut microbiomes. The Isme Journal. PMID 38904949 DOI: 10.1093/ismejo/wrae114  0.785
2024 Sulaiman J, Thompson J, Qian Y, Vivas E, Diener C, Gibbons SM, Safdar N, Venturelli OS. Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes. Biorxiv : the Preprint Server For Biology. PMID 38659900 DOI: 10.1101/2024.04.13.589383  0.671
2024 Quinn-Bohmann N, Freixas-Coutin JA, Seo J, Simmons R, Diener C, Gibbons SM. Meta-analysis of the human upper respiratory tract microbiome reveals robust taxonomic associations with health and disease. Bmc Biology. 22: 93. PMID 38654335 DOI: 10.1186/s12915-024-01887-0  0.669
2024 Diener C, Gibbons SM. Metagenomic estimation of dietary intake from human stool. Biorxiv : the Preprint Server For Biology. PMID 38370672 DOI: 10.1101/2024.02.02.578701  0.658
2023 Marcelino VR, Welsh C, Diener C, Gulliver EL, Rutten EL, Young RB, Giles EM, Gibbons SM, Greening C, Forster SC. Disease-specific loss of microbial cross-feeding interactions in the human gut. Nature Communications. 14: 6546. PMID 37863966 DOI: 10.1038/s41467-023-42112-w  0.7
2023 Happel AU, Rametse L, Perumaul B, Diener C, Gibbons SM, Nyangahu DD, Donald KA, Gray C, Jaspan HB. Bifidobacterium infantis supplementation versus placebo in early life to improve immunity in infants exposed to HIV: a protocol for a randomized trial. Bmc Complementary Medicine and Therapies. 23: 367. PMID 37853370 DOI: 10.1186/s12906-023-04208-0  0.615
2023 Lim JJ, Diener C, Wilson J, Valenzuela JJ, Baliga NS, Gibbons SM. Growth phase estimation for abundant bacterial populations sampled longitudinally from human stool metagenomes. Nature Communications. 14: 5682. PMID 37709733 DOI: 10.1038/s41467-023-41424-1  0.672
2023 Sarmiento KR, Carr A, Diener C, Locey KJ, Gibbons SM. Island biogeography theory and the gut: why taller people tend to harbor more diverse gut microbiomes. Biorxiv : the Preprint Server For Biology. PMID 37609334 DOI: 10.1101/2023.08.08.552554  0.781
2023 Diener C, Gibbons SM. Coarse graining the human gut microbiome. Cell Host & Microbe. 31: 1076-1078. PMID 37442093 DOI: 10.1016/j.chom.2023.06.001  0.69
2023 Carr A, Baliga NS, Diener C, Gibbons SM. Personalized engraftment risk prediction and probiotic therapy assessment in the human gut. Biorxiv : the Preprint Server For Biology. PMID 37162960 DOI: 10.1101/2023.04.28.538771  0.804
2023 Johnson JP, Diener C, Levine AE, Wilmanski T, Suskind DL, Ralevski A, Hadlock J, Magis AT, Hood L, Rappaport N, Gibbons SM. Generally-healthy individuals with aberrant bowel movement frequencies show enrichment for microbially-derived blood metabolites associated with impaired kidney function. Biorxiv : the Preprint Server For Biology. PMID 36945445 DOI: 10.1101/2023.03.04.531100  0.702
2023 Diener C, Gibbons SM. More is Different: Metabolic Modeling of Diverse Microbial Communities. Msystems. e0127022. PMID 36943046 DOI: 10.1128/msystems.01270-22  0.703
2023 Watanabe K, Wilmanski T, Diener C, Earls JC, Zimmer A, Lincoln B, Hadlock JJ, Lovejoy JC, Gibbons SM, Magis AT, Hood L, Price ND, Rappaport N. Multiomic signatures of body mass index identify heterogeneous health phenotypes and responses to a lifestyle intervention. Nature Medicine. PMID 36941332 DOI: 10.1038/s41591-023-02248-0  0.668
2023 Bohmann N, Wilmanski T, Levy L, Lampe JW, Gurry T, Rappaport N, Diener C, Gibbons SM. Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut. Biorxiv : the Preprint Server For Biology. PMID 36909644 DOI: 10.1101/2023.02.28.530516  0.763
2022 Diener C, Dai CL, Wilmanski T, Baloni P, Smith B, Rappaport N, Hood L, Magis AT, Gibbons SM. Genome-microbiome interplay provides insight into the determinants of the human blood metabolome. Nature Metabolism. PMID 36357685 DOI: 10.1038/s42255-022-00670-1  0.672
2022 Gibbons SM, Gurry T, Lampe JW, Chakrabarti A, Dam V, Everard A, Goas A, Gross G, Kleerebezem M, Lane J, Maukonen J, Penna ALB, Pot B, Valdes AM, Walton G, et al. Perspective: Leveraging the Gut Microbiota to Predict Personalized Responses to Dietary, Prebiotic, and Probiotic Interventions. Advances in Nutrition (Bethesda, Md.). 13: 1450-1461. PMID 35776947 DOI: 10.1093/advances/nmac075  0.314
2022 Wilmanski T, Kornilov SA, Diener C, Conomos MP, Lovejoy JC, Sebastiani P, Orwoll ES, Hood L, Price ND, Rappaport N, Magis AT, Gibbons SM. Heterogeneity in statin responses explained by variation in the human gut microbiome. Med (New York, N.Y.). 3: 388-405.e6. PMID 35690059 DOI: 10.1016/j.medj.2022.04.007  0.647
2021 Kordahi MC, Stanaway IB, Avril M, Chac D, Blanc MP, Ross B, Diener C, Jain S, McCleary P, Parker A, Friedman V, Huang J, Burke W, Gibbons SM, Willis AD, et al. Genomic and functional characterization of a mucosal symbiont involved in early-stage colorectal cancer. Cell Host & Microbe. PMID 34536346 DOI: 10.1016/j.chom.2021.08.013  0.658
2021 Diener C, Qin S, Zhou Y, Patwardhan S, Tang L, Lovejoy JC, Magis AT, Price ND, Hood L, Gibbons SM. Baseline Gut Metagenomic Functional Gene Signature Associated with Variable Weight Loss Responses following a Healthy Lifestyle Intervention in Humans. Msystems. e0096421. PMID 34519531 DOI: 10.1128/mSystems.00964-21  0.775
2021 Wilmanski T, Rappaport N, Diener C, Gibbons SM, Price ND. From taxonomy to metabolic output: what factors define gut microbiome health? Gut Microbes. 13: 1-20. PMID 33890557 DOI: 10.1080/19490976.2021.1907270  0.704
2021 Groussin M, Poyet M, Sistiaga A, Kearney SM, Moniz K, Noel M, Hooker J, Gibbons SM, Segurel L, Froment A, Mohamed RS, Fezeu A, Juimo VA, Lafosse S, Tabe FE, et al. Elevated rates of horizontal gene transfer in the industrialized human microbiome. Cell. PMID 33794144 DOI: 10.1016/j.cell.2021.02.052  0.766
2021 Diener C, Hoge ACH, Kearney SM, Kusebauch U, Patwardhan S, Moritz RL, Erdman SE, Gibbons SM. Non-responder phenotype reveals apparent microbiome-wide antibiotic tolerance in the murine gut. Communications Biology. 4: 316. PMID 33750910 DOI: 10.1038/s42003-021-01841-8  0.785
2021 Wilmanski T, Diener C, Rappaport N, Patwardhan S, Wiedrick J, Lapidus J, Earls JC, Zimmer A, Glusman G, Robinson M, Yurkovich JT, Kado DM, Cauley JA, Zmuda J, Lane NE, ... ... Gibbons SM, et al. Author Correction: Gut microbiome pattern reflects healthy ageing and predicts survival in humans. Nature Metabolism. PMID 33731896 DOI: 10.1038/s42255-021-00377-9  0.769
2021 Day JA, Diener C, Otwell AE, Tams KE, Bebout B, Detweiler AM, Lee MD, Scott MT, Ta W, Ha M, Carreon SA, Tong K, Ali AA, Gibbons SM, Baliga NS. Lettuce (Lactuca sativa) productivity influenced by microbial inocula under nitrogen-limited conditions in aquaponics. Plos One. 16: e0247534. PMID 33621265 DOI: 10.1371/journal.pone.0247534  0.661
2021 Wilmanski T, Diener C, Rappaport N, Patwardhan S, Wiedrick J, Lapidus J, Earls JC, Zimmer A, Glusman G, Robinson M, Yurkovich JT, Kado DM, Cauley JA, Zmuda J, Lane NE, ... ... Gibbons SM, et al. Gut microbiome pattern reflects healthy ageing and predicts survival in humans. Nature Metabolism. 3: 274-286. PMID 33619379 DOI: 10.1038/s42255-021-00348-0  0.789
2021 Otwell AE, Carr AV, Majumder ELW, Ruiz MK, Wilpiszeski RL, Hoang LT, Webb B, Turkarslan S, Gibbons SM, Elias DA, Stahl DA, Siuzdak G, Baliga NS. Sulfur Metabolites Play Key System-Level Roles in Modulating Denitrification. Msystems. 6. PMID 33563788 DOI: 10.1128/mSystems.01025-20  0.784
2021 Patwardhan S, Diener C, Swegle S, Howsmon B, Gibbons SM. What Are Poop Transplants and How Do They Work? Frontiers For Young Minds. 9. DOI: 10.3389/frym.2021.571389  0.769
2020 Manor O, Dai CL, Kornilov SA, Smith B, Price ND, Lovejoy JC, Gibbons SM, Magis AT. Health and disease markers correlate with gut microbiome composition across thousands of people. Nature Communications. 11: 5206. PMID 33060586 DOI: 10.1038/s41467-020-18871-1  0.31
2020 Gibbons SM. Keystone taxa indispensable for microbiome recovery. Nature Microbiology. 5: 1067-1068. PMID 32839573 DOI: 10.1038/S41564-020-0783-0  0.371
2020 Levy R, Magis AT, Earls JC, Manor O, Wilmanski T, Lovejoy J, Gibbons SM, Omenn GS, Hood L, Price ND. Longitudinal analysis reveals transition barriers between dominant ecological states in the gut microbiome. Proceedings of the National Academy of Sciences of the United States of America. PMID 32471946 DOI: 10.1073/Pnas.1922498117  0.411
2020 Diener C, Gibbons SM, Resendis-Antonio O. MICOM: Metagenome-Scale Modeling To Infer Metabolic Interactions in the Gut Microbiota. Msystems. 5. PMID 31964767 DOI: 10.1128/mSystems.00606-19  0.734
2019 Wilmanski T, Rappaport N, Earls JC, Magis AT, Manor O, Lovejoy J, Omenn GS, Hood L, Gibbons SM, Price ND. Blood metabolome predicts gut microbiome α-diversity in humans. Nature Biotechnology. PMID 31477923 DOI: 10.1038/S41587-019-0233-9  0.382
2019 Poyet M, Groussin M, Gibbons SM, Avila-Pacheco J, Jiang X, Kearney SM, Perrotta AR, Berdy B, Zhao S, Lieberman TD, Swanson PK, Smith M, Roesemann S, Alexander JE, Rich SA, et al. A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research. Nature Medicine. PMID 31477907 DOI: 10.1038/S41591-019-0559-3  0.788
2019 Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, ... ... Gibbons SM, et al. Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology. PMID 31399723 DOI: 10.1038/S41587-019-0252-6  0.704
2019 Xiang X, Gibbons SM, Li H, Shen H, Chu H. Proximate grassland and shrub-encroached sites show dramatic restructuring of soil bacterial communities. Peerj. 7: e7304. PMID 31355057 DOI: 10.7717/Peerj.7304  0.351
2019 Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, ... ... Gibbons SM, et al. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology. PMID 31341288 DOI: 10.1038/S41587-019-0209-9  0.697
2019 Carr A, Diener C, Baliga NS, Gibbons SM. Use and abuse of correlation analyses in microbial ecology. The Isme Journal. PMID 31253856 DOI: 10.1038/S41396-019-0459-Z  0.761
2019 Zhao S, Lieberman TD, Poyet M, Kauffman KM, Gibbons SM, Groussin M, Xavier RJ, Alm EJ. Adaptive Evolution within Gut Microbiomes of Healthy People. Cell Host & Microbe. PMID 31028005 DOI: 10.1016/J.Chom.2019.03.007  0.592
2018 Rocca JD, Simonin M, Blaszczak JR, Ernakovich JG, Gibbons SM, Midani FS, Washburne AD. The Microbiome Stress Project: Toward a Global Meta-Analysis of Environmental Stressors and Their Effects on Microbial Communities. Frontiers in Microbiology. 9: 3272. PMID 30687263 DOI: 10.3389/Fmicb.2018.03272  0.39
2018 Gurry T, Gibbons SM, Nguyen LTT, Kearney SM, Ananthakrishnan A, Jiang X, Duvallet C, Kassam Z, Alm EJ. Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort. Scientific Reports. 8: 12699. PMID 30139999 DOI: 10.1038/S41598-018-30783-1  0.787
2018 Kearney SM, Gibbons SM, Erdman SE, Alm EJ. Orthogonal Dietary Niche Enables Reversible Engraftment of a Gut Bacterial Commensal. Cell Reports. 24: 1842-1851. PMID 30110640 DOI: 10.1016/J.Celrep.2018.07.032  0.774
2018 Otwell AE, López García de Lomana A, Gibbons SM, Orellana MV, Baliga NS. Systems biology approaches towards predictive microbial ecology. Environmental Microbiology. PMID 30106224 DOI: 10.1111/1462-2920.14378  0.371
2018 Kearney SM, Gibbons SM, Poyet M, Gurry T, Bullock K, Allegretti JR, Clish CB, Alm EJ. Endospores and other lysis-resistant bacteria comprise a widely shared core community within the human microbiota. The Isme Journal. PMID 29899513 DOI: 10.1038/S41396-018-0192-Z  0.79
2018 Gibbons SM, Duvallet C, Alm EJ. Correcting for batch effects in case-control microbiome studies. Plos Computational Biology. 14: e1006102. PMID 29684016 DOI: 10.1371/Journal.Pcbi.1006102  0.53
2018 Kearney SM, Gibbons SM. Designing synbiotics for improved human health. Microbial Biotechnology. 11: 141-144. PMID 29205932 DOI: 10.1111/1751-7915.12885  0.695
2018 Xiang X, Gibbons SM, Li H, Shen H, Fang J, Chu H. Shrub encroachment is associated with changes in soil bacterial community composition in a temperate grassland ecosystem Plant and Soil. 425: 539-551. DOI: 10.1007/S11104-018-3605-X  0.315
2017 Duvallet C, Gibbons SM, Gurry T, Irizarry RA, Alm EJ. Meta-analysis of gut microbiome studies identifies disease-specific and shared responses. Nature Communications. 8: 1784. PMID 29209090 DOI: 10.1038/S41467-017-01973-8  0.576
2017 Pakpour S, Bhanvadia A, Zhu R, Amarnani A, Gibbons SM, Gurry T, Alm EJ, Martello LA. Identifying predictive features of Clostridium difficile infection recurrence before, during, and after primary antibiotic treatment. Microbiome. 5: 148. PMID 29132405 DOI: 10.1186/S40168-017-0368-1  0.587
2017 Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, et al. A communal catalogue reveals Earth's multiscale microbial diversity. Nature. PMID 29088705 DOI: 10.1038/Nature24621  0.539
2017 Gibbons SM. Microbial community ecology: Function over phylogeny. Nature Ecology & Evolution. 1: 32. PMID 28812558 DOI: 10.1038/S41559-016-0032  0.408
2017 Califf KJ, Schwarzberg-Lipson K, Garg N, Gibbons SM, Caporaso JG, Slots J, Cohen C, Dorrestein PC, Kelley ST. Multi-omics Analysis of Periodontal Pocket Microbial Communities Pre- and Posttreatment. Msystems. 2. PMID 28744486 DOI: 10.1128/mSystems.00016-17  0.303
2017 Gibbons SM, Lekberg Y, Mummey DL, Sangwan N, Ramsey PW, Gilbert JA. Invasive Plants Rapidly Reshape Soil Properties in a Grassland Ecosystem. Msystems. 2. PMID 28289729 DOI: 10.1128/mSystems.00178-16  0.426
2017 Gibbons SM, Kearney SM, Smillie CS, Alm EJ. Two dynamic regimes in the human gut microbiome. Plos Computational Biology. 13: e1005364. PMID 28222117 DOI: 10.1371/Journal.Pcbi.1005364  0.788
2016 Gibbons SM, Scholz M, Hutchison AL, Dinner AR, Gilbert JA, Coleman ML. Disturbance Regimes Predictably Alter Diversity in an Ecologically Complex Bacterial System. Mbio. 7. PMID 27999158 DOI: 10.1128/Mbio.01372-16  0.765
2016 Xiang X, Gibbons SM, He JS, Wang C, He D, Li Q, Ni Y, Chu H. Rapid response of arbuscular mycorrhizal fungal communities to short-term fertilization in an alpine grassland on the Qinghai-Tibet Plateau. Peerj. 4: e2226. PMID 27478711 DOI: 10.7717/Peerj.2226  0.337
2016 O'Brien SL, Gibbons SM, Owens SM, Hampton-Marcell J, Johnston ER, Jastrow JD, Gilbert JA, Meyer F, Antonopoulos DA. Spatial scale drives patterns in soil bacterial diversity. Environmental Microbiology. PMID 26914164 DOI: 10.1111/1462-2920.13231  0.529
2015 Gibbons SM, Gilbert JA. Microbial diversity-exploration of natural ecosystems and microbiomes. Current Opinion in Genetics & Development. 35: 66-72. PMID 26598941 DOI: 10.1016/J.Gde.2015.10.003  0.549
2015 Fuller M, Priyadarshini M, Gibbons SM, Angueira AR, Brodsky M, Hayes MG, Kovatcheva-Datchary P, Backhed F, Gilbert JA, Lowe WL, Layden BT. The Short Chain Fatty Acid Receptor, FFA2, contributes to gestational glucose homeostasis. American Journal of Physiology. Endocrinology and Metabolism. ajpendo.00171.2015. PMID 26394664 DOI: 10.1152/Ajpendo.00171.2015  0.472
2015 Wood M, Gibbons SM, Lax S, Eshoo-Anton TW, Owens SM, Kennedy S, Gilbert JA, Hampton-Marcell JT. Athletic equipment microbiota are shaped by interactions with human skin. Microbiome. 3: 25. PMID 26113975 DOI: 10.1186/S40168-015-0088-3  0.55
2015 Van Bonn W, LaPointe A, Gibbons SM, Frazier A, Hampton-Marcell J, Gilbert J. Aquarium microbiome response to ninety-percent system water change: Clues to microbiome management. Zoo Biology. 34: 360-7. PMID 26031788 DOI: 10.1002/Zoo.21220  0.489
2015 Lax S, Hampton-Marcell JT, Gibbons SM, Colares GB, Smith D, Eisen JA, Gilbert JA. Forensic analysis of the microbiome of phones and shoes. Microbiome. 3: 21. PMID 25969737 DOI: 10.1186/S40168-015-0082-9  0.539
2015 Leone V, Gibbons SM, Martinez K, Hutchison AL, Huang EY, Cham CM, Pierre JF, Heneghan AF, Nadimpalli A, Hubert N, Zale E, Wang Y, Huang Y, Theriault B, Dinner AR, et al. Effects of diurnal variation of gut microbes and high-fat feeding on host circadian clock function and metabolism. Cell Host & Microbe. 17: 681-9. PMID 25891358 DOI: 10.1016/J.Chom.2015.03.006  0.528
2015 Vitaglione P, Mennella I, Ferracane R, Rivellese AA, Giacco R, Ercolini D, Gibbons SM, La Storia A, Gilbert JA, Jonnalagadda S, Thielecke F, Gallo MA, Scalfi L, Fogliano V. Whole-grain wheat consumption reduces inflammation in a randomized controlled trial on overweight and obese subjects with unhealthy dietary and lifestyle behaviors: Role of polyphenols bound to cereal dietary fiber American Journal of Clinical Nutrition. 101: 251-261. PMID 25646321 DOI: 10.3945/Ajcn.114.088120  0.462
2015 Gibbons SM, Schwartz T, Fouquier J, Mitchell M, Sangwan N, Gilbert JA, Kelley ST. Ecological succession and viability of human-associated microbiota on restroom surfaces. Applied and Environmental Microbiology. 81: 765-73. PMID 25398865 DOI: 10.1128/Aem.03117-14  0.585
2015 Gibbons SM, Schwartz T, Fouquier J, Mitchell M, Sangwan N, Gilbert JA, Kelley ST. Ecological succession and viability of human-associated microbiota on restroom surfaces Applied and Environmental Microbiology. 81: 765-773. DOI: 10.1128/AEM.03117-14  0.457
2015 Xiang X, Gibbons SM, Yang J, Kong J, Sun R, Chu H. Arbuscular mycorrhizal fungal communities show low resistance and high resilience to wildfire disturbance Plant and Soil. DOI: 10.1007/S11104-015-2633-Z  0.324
2014 Pfister CA, Gilbert JA, Gibbons SM. The role of macrobiota in structuring microbial communities along rocky shores. Peerj. 2: e631. PMID 25337459 DOI: 10.7717/Peerj.631  0.567
2014 Rideout JR, He Y, Navas-Molina JA, Walters WA, Ursell LK, Gibbons SM, Chase J, McDonald D, Gonzalez A, Robbins-Pianka A, Clemente JC, Gilbert JA, Huse SM, Zhou HW, Knight R, et al. Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences. Peerj. 2: e545. PMID 25177538 DOI: 10.7717/Peerj.545  0.453
2014 Lax S, Smith DP, Hampton-Marcell J, Owens SM, Handley KM, Scott NM, Gibbons SM, Larsen P, Shogan BD, Weiss S, Metcalf JL, Ursell LK, Vázquez-Baeza Y, Van Treuren W, Hasan NA, et al. Longitudinal analysis of microbial interaction between humans and the indoor environment. Science (New York, N.Y.). 345: 1048-52. PMID 25170151 DOI: 10.1126/Science.1254529  0.585
2014 Winston ME, Hampton-Marcell J, Zarraonaindia I, Owens SM, Moreau CS, Gilbert JA, Hartsel J, Kennedy SJ, Gibbons SM. Understanding cultivar-specificity and soil determinants of the cannabis microbiome. Plos One. 9: e99641. PMID 24932479 DOI: 10.1371/Journal.Pone.0099641  0.515
2014 Gibbons SM, Jones E, Bearquiver A, Blackwolf F, Roundstone W, Scott N, Hooker J, Madsen R, Coleman ML, Gilbert JA. Human and environmental impacts on river sediment microbial communities. Plos One. 9: e97435. PMID 24841417 DOI: 10.1371/Journal.Pone.0097435  0.768
2014 Lekberg Y, Gibbons SM, Rosendahl S. Will different OTU delineation methods change interpretation of arbuscular mycorrhizal fungal community patterns? The New Phytologist. 202: 1101-4. PMID 24571363 DOI: 10.1111/Nph.12758  0.312
2014 Xiong J, Sun H, Peng F, Zhang H, Xue X, Gibbons SM, Gilbert JA, Chu H. Characterizing changes in soil bacterial community structure in response to short-term warming. Fems Microbiology Ecology. 89: 281-92. PMID 24476229 DOI: 10.1111/1574-6941.12289  0.526
2013 Rubin BE, Gibbons SM, Kennedy S, Hampton-Marcell J, Owens S, Gilbert JA. Investigating the impact of storage conditions on microbial community composition in soil samples. Plos One. 8: e70460. PMID 23936206 DOI: 10.1371/Journal.Pone.0070460  0.539
2013 McTee MR, Gibbons SM, Feris K, Gordon NS, Gannon JE, Ramsey PW. Heavy metal tolerance genes alter cellular thermodynamics in Pseudomonas putida and river Pseudomonas spp. and influence amebal predation. Fems Microbiology Letters. 347: 97-106. PMID 23895438 DOI: 10.1111/1574-6968.12226  0.62
2013 Gibbons SM, Caporaso JG, Pirrung M, Field D, Knight R, Gilbert JA. Evidence for a persistent microbial seed bank throughout the global ocean. Proceedings of the National Academy of Sciences of the United States of America. 110: 4651-5. PMID 23487761 DOI: 10.1073/Pnas.1217767110  0.517
2013 Roy A, Gibbons SM, Schunck H, Owens S, Caporaso JG, Sperling M, Nissimov JI, Romac S, Bittner L, Mühling M, Riebesell U, LaRoche J, Gilbert JA. Ocean acidification shows negligible impacts on high-latitude bacterial community structure in coastal pelagic mesocosms Biogeosciences. 10: 555-566. DOI: 10.5194/Bg-10-555-2013  0.337
2012 Larsen PE, Gibbons SM, Gilbert JA. Modeling microbial community structure and functional diversity across time and space. Fems Microbiology Letters. 332: 91-8. PMID 22553907 DOI: 10.1111/J.1574-6968.2012.02588.X  0.55
2012 Ramsey PW, Gibbons SM, Rice P, Mummey DL, Feris KP, Moore JN, Rillig MC, Gannon JE. Relative strengths of relationships between plant, microbial, and environmental parameters in heavy-metal contaminated floodplain soil Pedobiologia. 55: 15-23. DOI: 10.1016/J.Pedobi.2011.07.008  0.645
2011 Gibbons SM, Feris K, McGuirl MA, Morales SE, Hynninen A, Ramsey PW, Gannon JE. Use of microcalorimetry to determine the costs and benefits to Pseudomonas putida strain KT2440 of harboring cadmium efflux genes. Applied and Environmental Microbiology. 77: 108-13. PMID 21057015 DOI: 10.1128/Aem.01187-10  0.613
2011 Lekberg Y, Schnoor T, Kjøller R, Gibbons SM, Hansen LH, Al-Soud WA, Sørensen SJ, Rosendahl S. 454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities Journal of Ecology. 100: 151-160. DOI: 10.1111/J.1365-2745.2011.01894.X  0.349
2009 Feris KP, Ramsey PW, Gibbons SM, Frazar C, Rillig MC, Moore JN, Gannon JE, Holben WE. Hyporheic microbial community development is a sensitive indicator of metal contamination. Environmental Science & Technology. 43: 6158-63. PMID 19746707 DOI: 10.1021/Es9005465  0.652
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