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Jin Ryoun Kim - Publications

Affiliations: 
2004 Chemical Engineering University of Wisconsin, Madison, Madison, WI 
 2006 Chemical Engineering New York University, New York, NY, United States 
 2004-2006 Johns Hopkins University, Baltimore, MD 
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20/46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Kim JR. Oligomerization by co-assembly of β-amyloid and α-synuclein. Frontiers in Molecular Biosciences. 10: 1153839. PMID 37021111 DOI: 10.3389/fmolb.2023.1153839  0.405
2022 Chau E, Kim J. α-synuclein-assisted oligomerization of β-amyloid (1-42). Archives of Biochemistry and Biophysics. 109120. PMID 35041853 DOI: 10.1016/j.abb.2022.109120  0.548
2021 Chau E, Kim H, Shin J, Martinez A, Kim JR. Inhibition of alpha-synuclein aggregation by AM17, a synthetic resveratrol derivative. Biochemical and Biophysical Research Communications. 574: 85-90. PMID 34454326 DOI: 10.1016/j.bbrc.2021.08.049  0.557
2019 Candreva J, Chau E, Rice ME, Kim JR. Interactions between soluble species of β-amyloid and α-synuclein promote oligomerization while inhibiting fibrillization. Biochemistry. PMID 31854188 DOI: 10.1021/acs.biochem.9b00655  0.563
2019 Wood A, Chau E, Yang Y, Kim JR. A KLVFFAE-Derived Peptide Probe for Detection of Alpha-Synuclein Fibrils. Applied Biochemistry and Biotechnology. PMID 31776941 DOI: 10.1007/s12010-019-03197-6  0.604
2018 Charlton T, Shah V, Lynch T, Candreva J, Chau E, Yang Y, Kim H, Wood A, Kim JR. Amyloid aggregation of Bacillus circulans xylanase under a native condition and its modulation by beta-amyloid-derived peptide fragments. Chembiochem : a European Journal of Chemical Biology. PMID 30332530 DOI: 10.1002/cbic.201800472  0.696
2018 Candreva J, Chau E, Aoraha E, Nanda V, Kim JR. Hetero-assembly of a dual β-amyloid variant peptide system. Chemical Communications (Cambridge, England). PMID 29872774 DOI: 10.1039/C8Cc02724B  0.539
2015 Aoraha E, Candreva J, Kim JR. Engineering of a peptide probe for β-amyloid aggregates. Molecular Biosystems. 11: 2281-9. PMID 26073444 DOI: 10.1039/c5mb00280j  0.621
2012 Ko A, Kim JR. Effects of intramolecular distance between amyloidogenic domains on amyloid aggregation International Journal of Molecular Sciences. 13: 12169-12181. PMID 23202890 DOI: 10.3390/ijms131012169  0.609
2012 Hu Y, Su B, Zheng H, Kim JR. A peptide probe for detection of various beta-amyloid oligomers. Molecular Biosystems. 8: 2741-52. PMID 22832997 DOI: 10.1039/c2mb25148e  0.578
2012 Hu Y, Zheng H, Su B, Hernandez M, Kim JR. Modulation of beta-amyloid aggregation by engineering the sequence connecting beta-strand forming domains. Biochimica Et Biophysica Acta. 1824: 1069-79. PMID 22709576 DOI: 10.1016/j.bbapap.2012.06.004  0.609
2011 Hernandez M, Golbert S, Zhang LG, Kim JR. Creation of aggregation-defective α-synuclein variants by engineering the sequence connecting β-strand-forming domains. Chembiochem : a European Journal of Chemical Biology. 12: 2630-9. PMID 21998035 DOI: 10.1002/cbic.201100430  0.43
2011 Ahn JH, Hu Y, Hernandez M, Kim JR. Crocetin inhibits beta-amyloid fibrillization and stabilizes beta-amyloid oligomers. Biochemical and Biophysical Research Communications. 414: 79-83. PMID 21945434 DOI: 10.1016/J.Bbrc.2011.09.025  0.671
2011 Cho JE, Kim JR. Recent approaches targeting beta-amyloid for therapeutic intervention of Alzheimer's disease. Recent Patents On Cns Drug Discovery. 6: 222-33. PMID 21834780 DOI: 10.2174/157488911796958002  0.514
2010 Hu Y, Su B, Kim CS, Hernandez M, Rostagno A, Ghiso J, Kim JR. A strategy for designing a peptide probe for detection of β-amyloid oligomers. Chembiochem : a European Journal of Chemical Biology. 11: 2409-18. PMID 21031399 DOI: 10.1002/cbic.201000435  0.533
2006 Kim JR, Gibson TJ, Murphy RM. Predicting solvent and aggregation effects of peptides using group contribution calculations. Biotechnology Progress. 22: 605-8. PMID 16599584 DOI: 10.1021/Bp050407D  0.622
2006 Kim JR, Ostermeier M. Modulation of effector affinity by hinge region mutations also modulates switching activity in an engineered allosteric TEM1 beta-lactamase switch. Archives of Biochemistry and Biophysics. 446: 44-51. PMID 16384549 DOI: 10.1016/J.Abb.2005.11.014  0.302
2004 Kim JR, Muresan A, Lee KY, Murphy RM. Urea modulation of beta-amyloid fibril growth: experimental studies and kinetic models. Protein Science : a Publication of the Protein Society. 13: 2888-98. PMID 15459334 DOI: 10.1110/Ps.04847404  0.684
2004 Kim JR, Murphy RM. Mechanism of accelerated assembly of beta-amyloid filaments into fibrils by KLVFFK(6). Biophysical Journal. 86: 3194-203. PMID 15111432 DOI: 10.1016/S0006-3495(04)74367-2  0.729
2003 Kim JR, Gibson TJ, Murphy RM. Targeted control of kinetics of beta-amyloid self-association by surface tension-modifying peptides. The Journal of Biological Chemistry. 278: 40730-5. PMID 12917437 DOI: 10.1074/Jbc.M305466200  0.622
Low-probability matches (unlikely to be authored by this person)
2021 Chau E, Kim JR. Engineering of a protein probe with multiple inputs and multiple outputs for evaluation of alpha synuclein aggregation states. Biochemical Engineering Journal. 178. PMID 35002469 DOI: 10.1016/j.bej.2021.108292  0.293
2013 Hernandez M, Hu Y, Kim JR. A conformation-switching fluorescent protein probe for detection of alpha synuclein oligomers. Chemical Communications (Cambridge, England). 49: 10712-4. PMID 24100452 DOI: 10.1039/c3cc44804e  0.228
2016 Shirke AN, Su A, Jones JA, Butterfoss GL, Koffas MA, Kim JR, Gross RA. Comparative thermal inactivation analysis of Aspergillus oryzae and Thiellavia terrestris cutinase: Role of glycosylation. Biotechnology and Bioengineering. PMID 27425027 DOI: 10.1002/Bit.26052  0.225
2007 Liang J, Kim JR, Boock JT, Mansell TJ, Ostermeier M. Ligand binding and allostery can emerge simultaneously. Protein Science : a Publication of the Protein Society. 16: 929-37. PMID 17400921 DOI: 10.1110/Ps.062706007  0.189
2005 Guntas G, Mansell TJ, Kim JR, Ostermeier M. Directed evolution of protein switches and their application to the creation of ligand-binding proteins. Proceedings of the National Academy of Sciences of the United States of America. 102: 11224-9. PMID 16061816 DOI: 10.1073/Pnas.0502673102  0.157
2015 Pierre B, Labonte JW, Xiong T, Aoraha E, Williams A, Shah V, Chau E, Helal KY, Gray JJ, Kim JR. Molecular Determinants for Protein Stabilization by Insertional Fusion to a Thermophilic Host Protein. Chembiochem : a European Journal of Chemical Biology. PMID 26391210 DOI: 10.1002/Cbic.201500310  0.151
2021 Hemed-Shaked M, Cowman MK, Kim JR, Huang X, Chau E, Ovadia H, Amar KO, Eshkar-Sebban L, Melamed M, Lev LB, Kedar E, Armengol J, Alemany J, Beyth S, Okon E, et al. MTADV 5-MER peptide suppresses chronic inflammations as well as autoimmune pathologies and unveils a new potential target-Serum Amyloid A. Journal of Autoimmunity. 124: 102713. PMID 34390919 DOI: 10.1016/j.jaut.2021.102713  0.146
2011 Pierre B, Xiong T, Hayles L, Guntaka VR, Kim JR. Stability of a guest protein depends on stability of a host protein in insertional fusion. Biotechnology and Bioengineering. 108: 1011-20. PMID 21190177 DOI: 10.1002/Bit.23039  0.142
2013 Yuan H, Tank M, Alsofyani A, Shah N, Talati N, LoBello JC, Kim JR, Oonuki Y, de la Motte CA, Cowman MK. Molecular mass dependence of hyaluronan detection by sandwich ELISA-like assay and membrane blotting using biotinylated hyaluronan binding protein. Glycobiology. 23: 1270-80. PMID 23964097 DOI: 10.1093/Glycob/Cwt064  0.133
2013 Shah V, Pierre B, Kim JR. Facile construction of a random protein domain insertion library using an engineered transposon. Analytical Biochemistry. 432: 97-102. PMID 23026779 DOI: 10.1016/j.ab.2012.09.030  0.132
2000 Kim JR, Choi YS, Yoo YJ. Biotechnology Letters. 22: 485-489. DOI: 10.1023/A:1005660131552  0.12
2017 Shah V, Pierre B, Kirtadze T, Shin S, Kim JR. Stabilization of Bacillus circulans xylanase by combinatorial insertional fusion to a thermophilic host protein. Protein Engineering, Design & Selection : Peds. PMID 28100651 DOI: 10.1093/protein/gzw081  0.118
2009 Kim CS, Pierre B, Ostermeier M, Looger LL, Kim JR. Enzyme stabilization by domain insertion into a thermophilic protein. Protein Engineering, Design & Selection : Peds. 22: 615-23. PMID 19622545 DOI: 10.1093/Protein/Gzp044  0.116
2014 Williams K, Kim CS, Kim JR, Levicky R. Multimodal electrochemical sensing of transcription factor-operator complexes. The Analyst. 139: 1463-71. PMID 24503656 DOI: 10.1039/C3An02128A  0.108
2015 Pierre B, Shah V, Xiao J, Kim JR. Construction of a random circular permutation library using an engineered transposon. Analytical Biochemistry. 474: 16-24. PMID 25576953 DOI: 10.1016/j.ab.2014.12.011  0.093
2018 Finch AJ, Kim JR. Thermophilic Proteins as Versatile Scaffolds for Protein Engineering. Microorganisms. 6. PMID 30257429 DOI: 10.3390/microorganisms6040097  0.09
2009 Khapli S, Kim JR, Montclare JK, Levicky R, Porfiri M, Sofou S. Frozen cyclohexane-in-water emulsion as a sacrificial template for the synthesis of multilayered polyelectrolyte microcapsules. Langmuir : the Acs Journal of Surfaces and Colloids. 25: 9728-33. PMID 19507842 DOI: 10.1021/La901020J  0.082
2016 Shah V, Kim JR. Transposon for protein engineering. Mobile Genetic Elements. 6: e1239601. PMID 28090378 DOI: 10.1080/2159256X.2016.1239601  0.082
2023 Erkanli ME, El-Halabi K, Kim JR. Exploring the diversity of β-glucosidase: Classification, catalytic mechanism, molecular characteristics, kinetic models, and applications. Enzyme and Microbial Technology. 173: 110363. PMID 38041879 DOI: 10.1016/j.enzmictec.2023.110363  0.064
2011 Delaney JR, Sutphin GL, Dulken B, Sim S, Kim JR, Robison B, Schleit J, Murakami CJ, Carr D, An EH, Choi E, Chou A, Fletcher M, Jelic M, Liu B, et al. Sir2 deletion prevents lifespan extension in 32 long-lived mutants. Aging Cell. 10: 1089-91. PMID 21902802 DOI: 10.1111/J.1474-9726.2011.00742.X  0.062
2017 Shah V, Charlton T, Kim JR. Laboratory Evolution of Bacillus circulans Xylanase Inserted into Pyrococcus furiosus Maltodextrin-Binding Protein for Increased Xylanase Activity and Thermal Stability Toward Alkaline pH. Applied Biochemistry and Biotechnology. PMID 28986772 DOI: 10.1007/s12010-017-2619-9  0.061
2024 Erkanli ME, El-Halabi K, Kang TK, Kim JR. Hotspot Wizard-informed engineering of a hyperthermophilic β-glucosidase for enhanced enzyme activity at low temperatures. Biotechnology and Bioengineering. PMID 38682557 DOI: 10.1002/bit.28732  0.041
2013 Delaney JR, Chou A, Olsen B, Carr D, Murakami C, Ahmed U, Sim S, An EH, Castanza AS, Fletcher M, Higgins S, Holmberg M, Hui J, Jelic M, Jeong KS, ... Kim JR, et al. End-of-life cell cycle arrest contributes to stochasticity of yeast replicative aging. Fems Yeast Research. 13: 267-76. PMID 23336757 DOI: 10.1111/1567-1364.12030  0.038
2012 Murakami C, Delaney JR, Chou A, Carr D, Schleit J, Sutphin GL, An EH, Castanza AS, Fletcher M, Goswami S, Higgins S, Holmberg M, Hui J, Jelic M, Jeong KS, ... Kim JR, et al. pH neutralization protects against reduction in replicative lifespan following chronological aging in yeast. Cell Cycle (Georgetown, Tex.). 11: 3087-96. PMID 22871733 DOI: 10.4161/Cc.21465  0.038
2021 Kong J, Shin Y, Röhr JA, Wang H, Meng J, Wu Y, Katzenberg A, Kim G, Kim DY, Li TD, Chau E, Antonio F, Siboonruang T, Kwon S, Lee K, ... Kim JR, et al. CO doping of organic interlayers for perovskite solar cells. Nature. 594: 51-56. PMID 34079136 DOI: 10.1038/s41586-021-03518-y  0.028
2021 Kong J, Shin Y, Röhr JA, Wang H, Meng J, Wu Y, Katzenberg A, Kim G, Kim DY, Li TD, Chau E, Antonio F, Siboonruang T, Kwon S, Lee K, ... Kim JR, et al. Author Correction: CO doping of organic interlayers for perovskite solar cells. Nature. PMID 34480150 DOI: 10.1038/s41586-021-03839-y  0.01
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