| Year |
Citation |
Score |
| 2024 |
Gaudin M, Eveillard D, Chaffron S. Ecological associations distribution modelling of marine plankton at a global scale. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 379: 20230169. PMID 39034696 DOI: 10.1098/rstb.2023.0169 |
0.375 |
|
| 2024 |
Lambert A, Budinich M, Mahé M, Chaffron S, Eveillard D. Community metabolic modeling of host-microbiota interactions through multi-objective optimization. Iscience. 27: 110092. PMID 38952683 DOI: 10.1016/j.isci.2024.110092 |
0.736 |
|
| 2023 |
Jiménez NE, Acuña V, Cortés MP, Eveillard D, Maass AE. Unveiling abundance-dependent metabolic phenotypes of microbial communities. Msystems. e0049223. PMID 37668446 DOI: 10.1128/msystems.00492-23 |
0.458 |
|
| 2023 |
Rigonato J, Budinich M, Murillo AA, Brandão MC, Pierella Karlusich JJ, Soviadan YD, Gregory AC, Endo H, Kokoszka F, Vik D, Henry N, Frémont P, Labadie K, Zayed AA, Dimier C, ... ... Eveillard D, et al. Ocean-wide comparisons of mesopelagic planktonic community structures. Isme Communications. 3: 83. PMID 37596349 DOI: 10.1038/s43705-023-00279-9 |
0.745 |
|
| 2023 |
Deutschmann IM, Krabberød AK, Latorre F, Delage E, Marrasé C, Balagué V, Gasol JM, Massana R, Eveillard D, Chaffron S, Logares R. Disentangling temporal associations in marine microbial networks. Microbiome. 11: 83. PMID 37081491 DOI: 10.1186/s40168-023-01523-z |
0.304 |
|
| 2022 |
Richter DJ, Watteaux R, Vannier T, Leconte J, Frémont P, Reygondeau G, Maillet N, Henry N, Benoit G, Da Silva O, Delmont TO, Fernàndez-Guerra A, Suweis S, Narci R, Berney C, ... Eveillard D, et al. Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems. Elife. 11. PMID 35920817 DOI: 10.7554/eLife.78129 |
0.359 |
|
| 2022 |
Schroeter SA, Eveillard D, Chaffron S, Zoppi J, Kampe B, Lohmann P, Jehmlich N, von Bergen M, Sanchez-Arcos C, Pohnert G, Taubert M, Küsel K, Gleixner G. Microbial community functioning during plant litter decomposition. Scientific Reports. 12: 7451. PMID 35523988 DOI: 10.1038/s41598-022-11485-1 |
0.406 |
|
| 2022 |
Régimbeau A, Budinich M, Larhlimi A, Pierella Karlusich JJ, Aumont O, Memery L, Bowler C, Eveillard D. Contribution of genome-scale metabolic modelling to niche theory. Ecology Letters. PMID 35384214 DOI: 10.1111/ele.13954 |
0.734 |
|
| 2021 |
Chaffron S, Delage E, Budinich M, Vintache D, Henry N, Nef C, Ardyna M, Zayed AA, Junger PC, Galand PE, Lovejoy C, Murray AE, Sarmento H, Acinas SG, ... ... Eveillard D, et al. Environmental vulnerability of the global ocean epipelagic plankton community interactome. Science Advances. 7. PMID 34452910 DOI: 10.1126/sciadv.abg1921 |
0.747 |
|
| 2021 |
Wang S, Tang W, Delage E, Gifford S, Whitby H, González AG, Eveillard D, Planquette H, Cassar N. Investigating the microbial ecology of coastal hotspots of marine nitrogen fixation in the western North Atlantic. Scientific Reports. 11: 5508. PMID 33750865 DOI: 10.1038/s41598-021-84969-1 |
0.358 |
|
| 2020 |
Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, ... ... Eveillard D, et al. Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology. PMID 32514073 DOI: 10.1038/S41564-020-0733-X |
0.392 |
|
| 2020 |
Murray AE, Avalon NE, Bishop L, Davenport KW, Delage E, Dichosa AEK, Eveillard D, Higham ML, Kokkaliari S, Lo CC, Riesenfeld CS, Young RM, Chain PSG, Baker BJ. Uncovering the Core Microbiome and Distribution of Palmerolide in Across the Anvers Island Archipelago Antarctica. Marine Drugs. 18. PMID 32498449 DOI: 10.3390/Md18060298 |
0.358 |
|
| 2020 |
Sunagawa S, Acinas SG, Bork P, Bowler C, Eveillard D, Gorsky G, Guidi L, Iudicone D, Karsenti E, Lombard F, Ogata H, Pesant S, Sullivan MB, Wincker P, et al. Tara Oceans: towards global ocean ecosystems biology. Nature Reviews. Microbiology. PMID 32398798 DOI: 10.1038/S41579-020-0364-5 |
0.396 |
|
| 2020 |
Ramondenc S, Eveillard D, Guidi L, Lombard F, Delahaye B. Probabilistic modeling to estimate jellyfish ecophysiological properties and size distributions. Scientific Reports. 10: 6074. PMID 32269239 DOI: 10.1038/S41598-020-62357-5 |
0.338 |
|
| 2020 |
Lemonnier C, Perennou M, Eveillard D, Fernandez-Guerra A, Leynaert A, Marié L, Morrison HG, Memery L, Paillard C, Maignien L. Linking Spatial and Temporal Dynamic of Bacterioplankton Communities With Ecological Strategies Across a Coastal Frontal Area Frontiers in Marine Science. 7. DOI: 10.3389/Fmars.2020.00376 |
0.462 |
|
| 2019 |
Capotondi A, Jacox M, Bowler C, Kavanaugh M, Lehodey P, Barrie D, Brodie S, Chaffron S, Cheng W, Dias DF, Eveillard D, Guidi L, Iudicone D, Lovenduski NS, Nye JA, et al. Observational Needs Supporting Marine Ecosystems Modeling and Forecasting: From the Global Ocean to Regional and Coastal Systems Frontiers in Marine Science. 6. DOI: 10.3389/Fmars.2019.00623 |
0.376 |
|
| 2019 |
Caputi L, Carradec Q, Eveillard D, Kirilovsky A, Pelletier E, Karlusich JJP, Vieira FRJ, Villar E, Chaffron S, Malviya S, Scalco E, Acinas SG, Alberti A, Aury JM, Benoiston AS, et al. Community-Level Responses to Iron Availability in Open Ocean Plankton Ecosystems Global Biogeochemical Cycles. 33: 391-419. DOI: 10.1029/2018Gb006022 |
0.316 |
|
| 2019 |
D'Alelio D, Eveillard D, Coles VJ, Caputi L, d’Alcalà MR, Iudicone D. Modelling the complexity of plankton communities exploiting omics potential: From present challenges to an integrative pipeline Current Opinion in Systems Biology. 13: 68-74. DOI: 10.1016/J.Coisb.2018.10.003 |
0.416 |
|
| 2018 |
Eveillard D, Bouskill NJ, Vintache D, Gras J, Ward BB, Bourdon J. Probabilistic Modeling of Microbial Metabolic Networks for Integrating Partial Quantitative Knowledge Within the Nitrogen Cycle. Frontiers in Microbiology. 9: 3298. PMID 30745899 DOI: 10.3389/Fmicb.2018.03298 |
0.531 |
|
| 2018 |
Mandakovic D, Rojas C, Maldonado J, Latorre M, Travisany D, Delage E, Bihouée A, Jean G, Díaz FP, Fernández-Gómez B, Cabrera P, Gaete A, Latorre C, Gutiérrez RA, Maass A, ... ... Eveillard D, et al. Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience. Scientific Reports. 8: 5875. PMID 29651160 DOI: 10.1038/S41598-018-23931-0 |
0.48 |
|
| 2018 |
Thiriet-Rupert S, Carrier G, Trottier C, Eveillard D, Schoefs B, Bougaran G, Cadoret J, Chenais B, Saint-Jean B. Identification of transcription factors involved in the phenotype of a domesticated oleaginous microalgae strain of Tisochrysis lutea Algal Research-Biomass Biofuels and Bioproducts. 30: 59-72. DOI: 10.1016/J.Algal.2017.12.011 |
0.31 |
|
| 2017 |
Laniau J, Frioux C, Nicolas J, Baroukh C, Cortes MP, Got J, Trottier C, Eveillard D, Siegel A. Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks. Peerj. 5: e3860. PMID 29038751 DOI: 10.7717/Peerj.3860 |
0.406 |
|
| 2017 |
Thomas F, Bordron P, Eveillard D, Michel G. Gene Expression Analysis of Zobellia galactanivorans during the Degradation of Algal Polysaccharides Reveals both Substrate-Specific and Shared Transcriptome-Wide Responses. Frontiers in Microbiology. 8: 1808. PMID 28983288 DOI: 10.3389/Fmicb.2017.01808 |
0.39 |
|
| 2017 |
Budinich M, Bourdon J, Larhlimi A, Eveillard D. A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems. Plos One. 12: e0171744. PMID 28187207 DOI: 10.1371/Journal.Pone.0171744 |
0.759 |
|
| 2017 |
Prigent S, Frioux C, Dittami SM, Thiele S, Larhlimi A, Collet G, Gutknecht F, Got J, Eveillard D, Bourdon J, Plewniak F, Tonon T, Siegel A. Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. Plos Computational Biology. 13: e1005276. PMID 28129330 DOI: 10.1371/Journal.Pcbi.1005276 |
0.443 |
|
| 2016 |
Mas A, Jamshidi S, Lagadeuc Y, Eveillard D, Vandenkoornhuyse P. Beyond the Black Queen Hypothesis. The Isme Journal. 10: 2085-91. PMID 26953598 DOI: 10.1038/Ismej.2016.22 |
0.394 |
|
| 2016 |
Guidi L, Chaffron S, Bittner L, Eveillard D, Larhlimi A, Roux S, Darzi Y, Audic S, Berline L, Brum J, Coelho LP, Espinoza JC, Malviya S, Sunagawa S, Dimier C, et al. Plankton networks driving carbon export in the oligotrophic ocean. Nature. PMID 26863193 DOI: 10.1038/Nature16942 |
0.368 |
|
| 2015 |
Bordron P, Latorre M, Cortés MP, González M, Thiele S, Siegel A, Maass A, Eveillard D. Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach. Microbiologyopen. PMID 26677108 DOI: 10.1002/mbo3.315 |
0.346 |
|
| 2015 |
Tonon T, Eveillard D. Marine systems biology. Frontiers in Genetics. 6: 181. PMID 26029243 DOI: 10.3389/Fgene.2015.00181 |
0.489 |
|
| 2015 |
Budinich M, Larhlimi A, Bourdon J, Eveillard D. Relations in microbial ecosystems: application in a hot spring community F1000research. 6. DOI: 10.7490/F1000Research.1097994.1 |
0.736 |
|
| 2015 |
Mouquet N, Lagadeuc Y, Devictor V, Doyen L, Duputié A, Eveillard D, Faure D, Garnier E, Gimenez O, Huneman P, Jabot F, Jarne P, Joly D, Julliard R, Kéfi S, et al. Predictive ecology in a changing world Journal of Applied Ecology. 52: 1293-1310. DOI: 10.1111/1365-2664.12482 |
0.334 |
|
| 2015 |
Jamshidi S, Behm JE, Eveillard D, Kiers ET, Vandenkoornhuyse P. Using hybrid automata modelling to study phenotypic plasticity and allocation strategies in the plant mycorrhizal mutualism Ecological Modelling. 311: 11-19. DOI: 10.1016/J.Ecolmodel.2015.04.021 |
0.32 |
|
| 2014 |
Prigent S, Collet G, Dittami SM, Delage L, Ethis de Corny F, Dameron O, Eveillard D, Thiele S, Cambefort J, Boyen C, Siegel A, Tonon T. The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond. The Plant Journal : For Cell and Molecular Biology. 80: 367-81. PMID 25065645 DOI: 10.1111/Tpj.12627 |
0.484 |
|
| 2014 |
Newell SE, Eveillard D, McCarthy MJ, Gardner WS, Liu Z, Ward BB. A shift in the archaeal nitrifier community in response to natural and anthropogenic disturbances in the northern Gulf of Mexico. Environmental Microbiology Reports. 6: 106-12. PMID 24596268 DOI: 10.1111/1758-2229.12114 |
0.403 |
|
| 2014 |
Dittami SM, Eveillard D, Tonon T. A metabolic approach to study algal-bacterial interactions in changing environments. Molecular Ecology. 23: 1656-60. PMID 24447216 DOI: 10.1111/Mec.12670 |
0.47 |
|
| 2014 |
Prigent S, Collet G, Dittami SM, Delage L, Ethis de Corny F, Dameron O, Eveillard D, Thiele S, Cambefort J, Boyen C, Siegel A, Tonon T. The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): A resource to study brown algal physiology and beyond Plant Journal. DOI: 10.1111/tpj.12627 |
0.389 |
|
| 2013 |
Long RA, Eveillard D, Franco SL, Reeves E, Pinckney JL. Antagonistic interactions between heterotrophic bacteria as a potential regulator of community structure of hypersaline microbial mats. Fems Microbiology Ecology. 83: 74-81. PMID 22809069 DOI: 10.1111/J.1574-6941.2012.01457.X |
0.364 |
|
| 2013 |
Budinich M, Eveillard D, Bourdon J, Larhlimi A. MeDUSA: a SAGE-based tool for computing the capacitance of a metabolic network F1000research. 4. DOI: 10.7490/F1000Research.1094105.1 |
0.708 |
|
| 2012 |
Bouskill NJ, Eveillard D, Chien D, Jayakumar A, Ward BB. Environmental factors determining ammonia-oxidizing organism distribution and diversity in marine environments Environmental Microbiology. 14: 714-729. PMID 22050634 DOI: 10.1111/J.1462-2920.2011.02623.X |
0.364 |
|
| 2011 |
Tonon T, Eveillard D, Prigent S, Bourdon J, Potin P, Boyen C, Siegel A. Toward systems biology in brown algae to explore acclimation and adaptation to the shore environment. Omics : a Journal of Integrative Biology. 15: 883-92. PMID 22136637 DOI: 10.1089/Omi.2011.0089 |
0.432 |
|
| 2011 |
Bourdon J, Eveillard D, Siegel A. Integrating quantitative knowledge into a qualitative gene regulatory network. Plos Computational Biology. 7: e1002157. PMID 21935350 DOI: 10.1371/Journal.Pcbi.1002157 |
0.338 |
|
| 2011 |
Bordron P, Eveillard D, Rusu I. Integrated analysis of the gene neighbouring impact on bacterial metabolic networks Iet Systems Biology. 5: 261-268. PMID 21823757 DOI: 10.1049/Iet-Syb.2010.0070 |
0.363 |
|
| 2011 |
Bouskill NJ, Eveillard D, O'Mullan G, Jackson GA, Ward BB. Seasonal and annual reoccurrence in betaproteobacterial ammonia-oxidizing bacterial population structure. Environmental Microbiology. 13: 872-86. PMID 21054735 DOI: 10.1111/J.1462-2920.2010.02362.X |
0.581 |
|
| 2009 |
Ahmad J, Bourdon J, Eveillard D, Fromentin J, Roux O, Sinoquet C. Temporal constraints of a gene regulatory network: Refining a qualitative simulation. Bio Systems. 98: 149-59. PMID 19446002 DOI: 10.1016/J.Biosystems.2009.05.002 |
0.334 |
|
| 2009 |
Del Mondo G, Eveillard D, Rusu I. Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions. Bioinformatics (Oxford, England). 25: 926-32. PMID 19223451 DOI: 10.1093/Bioinformatics/Btp083 |
0.303 |
|
| 2009 |
Chango A, Nour AA, Bousserouel S, Eveillard D, Anton PM, Guéant JL. Time course gene expression in the one-carbon metabolism network using HepG2 cell line grown in folate-deficient medium Journal of Nutritional Biochemistry. 20: 312-320. PMID 18602821 DOI: 10.1016/J.Jnutbio.2008.04.004 |
0.307 |
|
| 2007 |
Ward BB, Eveillard D, Kirshtein JD, Nelson JD, Voytek MA, Jackson GA. Ammonia-oxidizing bacterial community composition in estuarine and oceanic environments assessed using a functional gene microarray. Environmental Microbiology. 9: 2522-38. PMID 17803777 DOI: 10.1111/J.1462-2920.2007.01371.X |
0.55 |
|
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