Damien Eveillard, Ph.D. - Publications

Affiliations: 
LS2N Université de Nantes & CNRS 
Area:
systems biology; systems ecology;

50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Chaffron S, Delage E, Budinich M, Vintache D, Henry N, Nef C, Ardyna M, Zayed AA, Junger PC, Galand PE, Lovejoy C, Murray AE, Sarmento H, Acinas SG, ... ... Eveillard D, et al. Environmental vulnerability of the global ocean epipelagic plankton community interactome. Science Advances. 7. PMID 34452910 DOI: 10.1126/sciadv.abg1921  1
2021 Lin Y, Moreno C, Marchetti A, Ducklow H, Schofield O, Delage E, Meredith M, Li Z, Eveillard D, Chaffron S, Cassar N. Decline in plankton diversity and carbon flux with reduced sea ice extent along the Western Antarctic Peninsula. Nature Communications. 12: 4948. PMID 34400630 DOI: 10.1038/s41467-021-25235-w  1
2021 Wang S, Tang W, Delage E, Gifford S, Whitby H, González AG, Eveillard D, Planquette H, Cassar N. Investigating the microbial ecology of coastal hotspots of marine nitrogen fixation in the western North Atlantic. Scientific Reports. 11: 5508. PMID 33750865 DOI: 10.1038/s41598-021-84969-1  0.01
2021 Dittami SM, Arboleda E, Auguet JC, Bigalke A, Briand E, Cárdenas P, Cardini U, Decelle J, Engelen AH, Eveillard D, Gachon CMM, Griffiths SM, Harder T, Kayal E, Kazamia E, et al. A community perspective on the concept of marine holobionts: current status, challenges, and future directions. Peerj. 9: e10911. PMID 33665032 DOI: 10.7717/peerj.10911  1
2020 Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, ... ... Eveillard D, et al. Author Correction: Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology. PMID 33184503 DOI: 10.1038/s41564-020-00827-2  1
2020 Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L, Hoebeke M, Bisch A, Le Corguillé G, Corre E, Labadie K, ... ... Eveillard D, et al. Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria. Frontiers in Microbiology. 11: 567431. PMID 33042072 DOI: 10.3389/fmicb.2020.567431  1
2020 Guyet U, Nguyen NA, Doré H, Haguait J, Pittera J, Conan M, Ratin M, Corre E, Le Corguillé G, Brillet-Guéguen L, Hoebeke M, Six C, Steglich C, Siegel A, Eveillard D, et al. Synergic Effects of Temperature and Irradiance on the Physiology of the Marine Strain WH7803. Frontiers in Microbiology. 11: 1707. PMID 32793165 DOI: 10.3389/Fmicb.2020.01707  1
2020 Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, ... ... Eveillard D, et al. Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology. PMID 32514073 DOI: 10.1038/S41564-020-0733-X  1
2020 Murray AE, Avalon NE, Bishop L, Davenport KW, Delage E, Dichosa AEK, Eveillard D, Higham ML, Kokkaliari S, Lo CC, Riesenfeld CS, Young RM, Chain PSG, Baker BJ. Uncovering the Core Microbiome and Distribution of Palmerolide in Across the Anvers Island Archipelago Antarctica. Marine Drugs. 18. PMID 32498449 DOI: 10.3390/Md18060298  1
2020 Sunagawa S, Acinas SG, Bork P, Bowler C, Eveillard D, Gorsky G, Guidi L, Iudicone D, Karsenti E, Lombard F, Ogata H, Pesant S, Sullivan MB, Wincker P, et al. Tara Oceans: towards global ocean ecosystems biology. Nature Reviews. Microbiology. PMID 32398798 DOI: 10.1038/S41579-020-0364-5  1
2020 Ramondenc S, Eveillard D, Guidi L, Lombard F, Delahaye B. Probabilistic modeling to estimate jellyfish ecophysiological properties and size distributions. Scientific Reports. 10: 6074. PMID 32269239 DOI: 10.1038/S41598-020-62357-5  1
2020 Lemonnier C, Perennou M, Eveillard D, Fernandez-Guerra A, Leynaert A, Marié L, Morrison HG, Memery L, Paillard C, Maignien L. Linking Spatial and Temporal Dynamic of Bacterioplankton Communities With Ecological Strategies Across a Coastal Frontal Area Frontiers in Marine Science. 7. DOI: 10.3389/Fmars.2020.00376  0.01
2019 Caputi L, Carradec Q, Eveillard D, Kirilovsky A, Pelletier E, Karlusich JJP, Vieira FRJ, Villar E, Chaffron S, Malviya S, Scalco E, Acinas SG, Alberti A, Aury JM, Benoiston AS, et al. Community-Level Responses to Iron Availability in Open Ocean Plankton Ecosystems Global Biogeochemical Cycles. 33: 391-419. DOI: 10.1029/2018Gb006022  1
2019 D'Alelio D, Eveillard D, Coles VJ, Caputi L, d’Alcalà MR, Iudicone D. Modelling the complexity of plankton communities exploiting omics potential: From present challenges to an integrative pipeline Current Opinion in Systems Biology. 13: 68-74. DOI: 10.1016/J.Coisb.2018.10.003  0.01
2018 Mandakovic D, Rojas C, Maldonado J, Latorre M, Travisany D, Delage E, Bihouée A, Jean G, Díaz FP, Fernández-Gómez B, Cabrera P, Gaete A, Latorre C, Gutiérrez RA, Maass A, ... ... Eveillard D, et al. Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience. Scientific Reports. 8: 5875. PMID 29651160 DOI: 10.1038/S41598-018-23931-0  1
2018 Thiriet-Rupert S, Carrier G, Trottier C, Eveillard D, Schoefs B, Bougaran G, Cadoret J, Chenais B, Saint-Jean B. Identification of transcription factors involved in the phenotype of a domesticated oleaginous microalgae strain of Tisochrysis lutea Algal Research-Biomass Biofuels and Bioproducts. 30: 59-72. DOI: 10.1016/J.Algal.2017.12.011  1
2017 Delahaye B, Eveillard D, Bouskill N. On the Power of Uncertainties in Microbial System Modeling: No Need To Hide Them Anymore. Msystems. 2. PMID 29238753 DOI: 10.1128/mSystems.00169-17  1
2017 Laniau J, Frioux C, Nicolas J, Baroukh C, Cortes MP, Got J, Trottier C, Eveillard D, Siegel A. Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks. Peerj. 5: e3860. PMID 29038751 DOI: 10.7717/Peerj.3860  1
2017 Thomas F, Bordron P, Eveillard D, Michel G. Gene Expression Analysis of Zobellia galactanivorans during the Degradation of Algal Polysaccharides Reveals both Substrate-Specific and Shared Transcriptome-Wide Responses. Frontiers in Microbiology. 8: 1808. PMID 28983288 DOI: 10.3389/Fmicb.2017.01808  1
2017 Budinich M, Bourdon J, Larhlimi A, Eveillard D. A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems. Plos One. 12: e0171744. PMID 28187207 DOI: 10.1371/Journal.Pone.0171744  1
2017 Prigent S, Frioux C, Dittami SM, Thiele S, Larhlimi A, Collet G, Gutknecht F, Got J, Eveillard D, Bourdon J, Plewniak F, Tonon T, Siegel A. Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. Plos Computational Biology. 13: e1005276. PMID 28129330 DOI: 10.1371/Journal.Pcbi.1005276  1
2016 Mas A, Jamshidi S, Lagadeuc Y, Eveillard D, Vandenkoornhuyse P. Beyond the Black Queen Hypothesis. The Isme Journal. 10: 2085-91. PMID 26953598 DOI: 10.1038/Ismej.2016.22  1
2016 Guidi L, Chaffron S, Bittner L, Eveillard D, Larhlimi A, Roux S, Darzi Y, Audic S, Berline L, Brum J, Coelho LP, Espinoza JC, Malviya S, Sunagawa S, Dimier C, et al. Plankton networks driving carbon export in the oligotrophic ocean. Nature. PMID 26863193 DOI: 10.1038/Nature16942  1
2016 Acuña V, Aravena A, Guziolowski C, Eveillard D, Siegel A, Maass A. Deciphering transcriptional regulations coordinating the response to environmental changes. Bmc Bioinformatics. 17: 35. PMID 26772805 DOI: 10.1186/S12859-016-0885-0  1
2016 Acuña V, Aravena A, Guziolowski C, Eveillard D, Siegel A, Maass A. Deciphering transcriptional regulations coordinating the response to environmental changes Bmc Bioinformatics. 17. DOI: 10.1186/s12859-016-0885-0  1
2016 Mas A, Jamshidi S, Lagadeuc Y, Eveillard D, Vandenkoornhuyse P. Beyond the Black Queen Hypothesis Isme Journal. DOI: 10.1038/ismej.2016.22  1
2015 Bordron P, Latorre M, Cortés MP, González M, Thiele S, Siegel A, Maass A, Eveillard D. Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach. Microbiologyopen. PMID 26677108 DOI: 10.1002/mbo3.315  1
2015 Tonon T, Eveillard D. Marine systems biology. Frontiers in Genetics. 6: 181. PMID 26029243 DOI: 10.3389/Fgene.2015.00181  1
2015 Budinich M, Larhlimi A, Bourdon J, Eveillard D. Relations in microbial ecosystems: application in a hot spring community F1000research. 6. DOI: 10.7490/F1000Research.1097994.1  1
2015 Mouquet N, Lagadeuc Y, Devictor V, Doyen L, Duputié A, Eveillard D, Faure D, Garnier E, Gimenez O, Huneman P, Jabot F, Jarne P, Joly D, Julliard R, Kéfi S, et al. Predictive ecology in a changing world Journal of Applied Ecology. 52: 1293-1310. DOI: 10.1111/1365-2664.12482  1
2015 Jamshidi S, Behm JE, Eveillard D, Kiers ET, Vandenkoornhuyse P. Using hybrid automata modelling to study phenotypic plasticity and allocation strategies in the plant mycorrhizal mutualism Ecological Modelling. 311: 11-19. DOI: 10.1016/J.Ecolmodel.2015.04.021  1
2014 Prigent S, Collet G, Dittami SM, Delage L, Ethis de Corny F, Dameron O, Eveillard D, Thiele S, Cambefort J, Boyen C, Siegel A, Tonon T. The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond. The Plant Journal : For Cell and Molecular Biology. 80: 367-81. PMID 25065645 DOI: 10.1111/Tpj.12627  1
2014 Newell SE, Eveillard D, McCarthy MJ, Gardner WS, Liu Z, Ward BB. A shift in the archaeal nitrifier community in response to natural and anthropogenic disturbances in the northern Gulf of Mexico. Environmental Microbiology Reports. 6: 106-12. PMID 24596268 DOI: 10.1111/1758-2229.12114  1
2014 Dittami SM, Eveillard D, Tonon T. A metabolic approach to study algal-bacterial interactions in changing environments. Molecular Ecology. 23: 1656-60. PMID 24447216 DOI: 10.1111/Mec.12670  1
2014 Bihouée A, Delage E, Charneau S, Larhlimi A, Donnart A, Eveillard D, Bourdon J, Lindenbaum P, Toumaniantz G, Charpentier F, Redon R, Jean G. A combined approch to identify therapeutic targets involved in Progressive Cardiac Conduction Defect F1000research. 5. DOI: 10.7490/F1000Research.1096861.1  1
2014 Prigent S, Collet G, Dittami SM, Delage L, Ethis de Corny F, Dameron O, Eveillard D, Thiele S, Cambefort J, Boyen C, Siegel A, Tonon T. The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): A resource to study brown algal physiology and beyond Plant Journal. DOI: 10.1111/tpj.12627  1
2013 Long RA, Eveillard D, Franco SL, Reeves E, Pinckney JL. Antagonistic interactions between heterotrophic bacteria as a potential regulator of community structure of hypersaline microbial mats. Fems Microbiology Ecology. 83: 74-81. PMID 22809069 DOI: 10.1111/J.1574-6941.2012.01457.X  1
2013 Budinich M, Eveillard D, Bourdon J, Larhlimi A. MeDUSA: a SAGE-based tool for computing the capacitance of a metabolic network F1000research. 4. DOI: 10.7490/F1000Research.1094105.1  1
2012 Bouskill NJ, Eveillard D, Chien D, Jayakumar A, Ward BB. Environmental factors determining ammonia-oxidizing organism distribution and diversity in marine environments Environmental Microbiology. 14: 714-729. PMID 22050634 DOI: 10.1111/J.1462-2920.2011.02623.X  1
2011 Tonon T, Eveillard D, Prigent S, Bourdon J, Potin P, Boyen C, Siegel A. Toward systems biology in brown algae to explore acclimation and adaptation to the shore environment. Omics : a Journal of Integrative Biology. 15: 883-92. PMID 22136637 DOI: 10.1089/Omi.2011.0089  1
2011 Bourdon J, Eveillard D, Siegel A. Integrating quantitative knowledge into a qualitative gene regulatory network. Plos Computational Biology. 7: e1002157. PMID 21935350 DOI: 10.1371/Journal.Pcbi.1002157  1
2011 Bordron P, Eveillard D, Rusu I. Integrated analysis of the gene neighbouring impact on bacterial metabolic networks Iet Systems Biology. 5: 261-268. PMID 21823757 DOI: 10.1049/Iet-Syb.2010.0070  1
2011 Gnimpieba EZ, Eveillard D, Guéant JL, Chango A. Using logic programming for modeling the one-carbon metabolism network to study the impact of folate deficiency on methylation processes. Molecular Biosystems. 7: 2508-21. PMID 21647531 DOI: 10.1039/C1Mb05102D  1
2011 Bouskill NJ, Eveillard D, O'Mullan G, Jackson GA, Ward BB. Seasonal and annual reoccurrence in betaproteobacterial ammonia-oxidizing bacterial population structure. Environmental Microbiology. 13: 872-86. PMID 21054735 DOI: 10.1111/J.1462-2920.2010.02362.X  1
2010 Martinez SF, Renodon-Cornière A, Nomme J, Eveillard D, Fleury F, Takahashi M, Weigel P. Targeting human Rad51 by specific DNA aptamers induces inhibition of homologous recombination. Biochimie. 92: 1832-8. PMID 20713120 DOI: 10.1016/J.Biochi.2010.08.006  1
2010 Fromentin J, Eveillard D, Roux O. Hybrid modeling of biological networks: mixing temporal and qualitative biological properties. Bmc Systems Biology. 4: 79. PMID 20525331 DOI: 10.1186/1752-0509-4-79  1
2009 Ahmad J, Bourdon J, Eveillard D, Fromentin J, Roux O, Sinoquet C. Temporal constraints of a gene regulatory network: Refining a qualitative simulation. Bio Systems. 98: 149-59. PMID 19446002 DOI: 10.1016/J.Biosystems.2009.05.002  1
2009 Del Mondo G, Eveillard D, Rusu I. Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions. Bioinformatics (Oxford, England). 25: 926-32. PMID 19223451 DOI: 10.1093/Bioinformatics/Btp083  1
2009 Chango A, Nour AA, Bousserouel S, Eveillard D, Anton PM, Guéant JL. Time course gene expression in the one-carbon metabolism network using HepG2 cell line grown in folate-deficient medium Journal of Nutritional Biochemistry. 20: 312-320. PMID 18602821 DOI: 10.1016/J.Jnutbio.2008.04.004  1
2007 Ward BB, Eveillard D, Kirshtein JD, Nelson JD, Voytek MA, Jackson GA. Ammonia-oxidizing bacterial community composition in estuarine and oceanic environments assessed using a functional gene microarray. Environmental Microbiology. 9: 2522-38. PMID 17803777 DOI: 10.1111/J.1462-2920.2007.01371.X  1
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