Year |
Citation |
Score |
2023 |
Cummins B, Vrana J, Moseley RC, Eramian H, Deckard A, Fontanarrosa P, Bryce D, Weston M, Zheng G, Nowak J, Motta FC, Eslami M, Johnson KL, Goldman RP, Myers CJ, ... ... Bartley B, et al. Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop. Synthetic Biology (Oxford, England). 8: ysad005. PMID 37073283 DOI: 10.1093/synbio/ysad005 |
0.355 |
|
2022 |
Mitchell T, Beal J, Bartley B. pySBOL3: SBOL3 for Python Programmers. Acs Synthetic Biology. PMID 35767721 DOI: 10.1021/acssynbio.2c00249 |
0.411 |
|
2022 |
Bryce D, Goldman RP, DeHaven M, Beal J, Bartley B, Nguyen TT, Walczak N, Weston M, Zheng G, Nowak J, Lee P, Stubbs J, Gaffney N, Vaughn MW, Myers CJ, et al. Round Trip: An Automated Pipeline for Experimental Design, Execution, and Analysis. Acs Synthetic Biology. PMID 35099189 DOI: 10.1021/acssynbio.1c00305 |
0.344 |
|
2021 |
Baig H, Fontanarossa P, Kulkarni V, McLaughlin J, Vaidyanathan P, Bartley B, Bhakta S, Bhatia S, Bissell M, Clancy K, Cox RS, Goñi Moreno A, Gorochowski T, Grunberg R, Lee J, et al. Synthetic biology open language visual (SBOL Visual) version 2.3. Journal of Integrative Bioinformatics. PMID 34098590 DOI: 10.1515/jib-2020-0045 |
0.622 |
|
2021 |
Collins JH, Keating KW, Jones TR, Balaji S, Marsan CB, Çomo M, Newlon ZJ, Mitchell T, Bartley B, Adler A, Roehner N, Young EM. Engineered yeast genomes accurately assembled from pure and mixed samples. Nature Communications. 12: 1485. PMID 33674578 DOI: 10.1038/s41467-021-21656-9 |
0.301 |
|
2020 |
McLaughlin JA, Beal J, Mısırlı G, Grünberg R, Bartley BA, Scott-Brown J, Vaidyanathan P, Fontanarrosa P, Oberortner E, Wipat A, Gorochowski TE, Myers CJ. The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering. Frontiers in Bioengineering and Biotechnology. 8: 1009. PMID 33015004 DOI: 10.3389/fbioe.2020.01009 |
0.376 |
|
2020 |
Brown B, Bartley B, Beal J, Bird JE, Goñi Moreno Á, McLaughlin JA, Misirli G, Roehner N, Skelton DJ, Poh CL, Ofiteru ID, James K, Wipat A. Capturing Multicellular System Designs Using Synthetic Biology Open Language (SBOL). Acs Synthetic Biology. PMID 32786354 DOI: 10.1021/Acssynbio.0C00176 |
0.424 |
|
2020 |
Baig H, Fontanarrosa P, Kulkarni V, McLaughlin JA, Vaidyanathan P, Bartley B, Beal J, Crowther M, Gorochowski TE, Grünberg R, Misirli G, Scott-Brown J, Oberortner E, Wipat A, Myers CJ. Synthetic biology open language (SBOL) version 3.0.0. Journal of Integrative Bioinformatics. PMID 32589605 DOI: 10.1515/Jib-2020-0017 |
0.46 |
|
2020 |
Baig H, Fontanarossa P, Kulkarni V, McLaughlin J, Vaidyanathan P, Bartley B, Bhatia S, Bhakta S, Bissell M, Clancy K, Cox RS, Moreno AG, Gorochowski T, Grunberg R, Luna A, et al. Synthetic biology open language visual (SBOL visual) version 2.2. Journal of Integrative Bioinformatics. PMID 32543457 DOI: 10.1515/jib-2020-0014 |
0.64 |
|
2020 |
Crowther M, Grozinger L, Pocock M, Taylor CPD, McLaughlin JA, Misirli G, Bartley B, Beal J, Goni-Moreno A, Wipat A. ShortBOL: A language for scripting designs for engineered biological systems using SyntheticBiology Open Language (SBOL). Acs Synthetic Biology. PMID 32129980 DOI: 10.1021/acssynbio.9b00470 |
0.416 |
|
2019 |
Martínez-García E, Goñi-Moreno A, Bartley B, McLaughlin J, Sánchez-Sampedro L, Pascual Del Pozo H, Prieto Hernández C, Marletta AS, De Lucrezia D, Sánchez-Fernández G, Fraile S, de Lorenzo V. SEVA 3.0: an update of the Standard European Vector Architecture for enabling portability of genetic constructs among diverse bacterial hosts. Nucleic Acids Research. PMID 31740968 DOI: 10.1093/nar/gkz1024 |
0.369 |
|
2019 |
Beal J, Nguyen T, Gorochowski TE, Goñi-Moreno A, Scott-Brown J, McLaughlin JA, Madsen C, Aleritsch B, Bartley B, Bhakta S, Bissell M, Castillo-Hair SM, Clancy K, Luna A, Le Novere N, et al. Communicating Structure and Function in Synthetic Biology Diagrams. Acs Synthetic Biology. PMID 31348656 DOI: 10.1021/Acssynbio.9B00139 |
0.662 |
|
2019 |
Roehner N, Bartley B, Beal J, McLaughlin J, Pocock M, Zhang M, Zundel Z, Myers CJ. Specifying Combinatorial Designs with the Synthetic Biology Open Language (SBOL). Acs Synthetic Biology. PMID 31260271 DOI: 10.1021/acssynbio.9b00092 |
0.405 |
|
2019 |
Madsen C, Goñi Moreno A, P U, Palchick Z, Roehner N, Atallah C, Bartley B, Choi K, Cox RS, Gorochowski T, Grünberg R, Macklin C, McLaughlin J, Meng X, Nguyen T, et al. Synthetic Biology Open Language (SBOL) Version 2.3. Journal of Integrative Bioinformatics. PMID 31199770 DOI: 10.1515/Jib-2019-0025 |
0.706 |
|
2019 |
Madsen C, Goni Moreno A, Palchick Z, P U, Roehner N, Bartley B, Bhatia S, Bhakta S, Bissell M, Clancy K, Cox RS, Gorochowski T, Grunberg R, Luna A, McLaughlin J, et al. Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1. Journal of Integrative Bioinformatics. PMID 31199768 DOI: 10.1515/jib-2018-0101 |
0.639 |
|
2018 |
Bartley B, Choi K, Samineni M, Zundel Z, Nguyen T, Myers CJ, Sauro H. pySBOL: A Python Package for Genetic Design Automation and Standardization. Acs Synthetic Biology. PMID 30424601 DOI: 10.1021/Acssynbio.8B00336 |
0.682 |
|
2018 |
Cox RS, Madsen C, McLaughlin JA, Nguyen T, Roehner N, Bartley B, Beal J, Bissell M, Choi K, Clancy K, Grünberg R, Macklin C, Misirli G, Oberortner E, Pocock M, et al. Synthetic Biology Open Language (SBOL) Version 2.2.0. Journal of Integrative Bioinformatics. PMID 29605823 DOI: 10.1515/Jib-2018-0001 |
0.71 |
|
2018 |
Cox RS, Madsen C, McLaughlin J, Nguyen T, Roehner N, Bartley B, Bhatia S, Bissell M, Clancy K, Gorochowski T, Grünberg R, Luna A, Le Novere N, Pocock M, Sauro H, et al. Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0. Journal of Integrative Bioinformatics. PMID 29549707 DOI: 10.1515/Jib-2017-0074 |
0.673 |
|
2017 |
Bartley BA, Kim K, Medley JK, Sauro HM. Synthetic Biology: Engineering Living Systems from Biophysical Principles. Biophysical Journal. 112: 1050-1058. PMID 28355534 DOI: 10.1016/J.Bpj.2017.02.013 |
0.624 |
|
2016 |
Beal J, Cox RS, Grünberg R, McLaughlin J, Nguyen T, Bartley B, Bissell M, Choi K, Clancy K, Macklin C, Madsen C, Misirli G, Oberortner E, Pocock M, Roehner N, et al. Synthetic Biology Open Language (SBOL) Version 2.1.0. Journal of Integrative Bioinformatics. 13: 30-132. PMID 29215992 DOI: 10.1515/jib-2016-291 |
0.7 |
|
2016 |
Beal J, Cox RS, Grünberg R, McLaughlin J, Nguyen T, Bartley B, Bissell M, Choi K, Clancy K, Macklin C, Madsen C, Misirli G, Oberortner E, Pocock M, Roehner N, et al. Synthetic Biology Open Language (SBOL) Version 2.1.0. Journal of Integrative Bioinformatics. 13: 291. PMID 28187407 DOI: 10.2390/biecoll-jib-2016-291 |
0.7 |
|
2016 |
Der BS, Glassey E, Bartley BA, Enghuus C, Goodman DB, Gordon DB, Voigt CA, Gorochowski TE. DNAplotlib: programmable visualization of genetic designs and associated data. Acs Synthetic Biology. PMID 27744689 DOI: 10.1021/Acssynbio.6B00252 |
0.364 |
|
2016 |
Roehner N, Beal J, Clancy K, Bartley B, Misirli G, Gruenberg R, Oberortner E, Pocock M, Bissell M, Madsen C, Nguyen T, Zhang M, Zhang Z, Zundel Z, Densmore D, et al. Sharing Structure and Function in Biological Design with SBOL 2.0. Acs Synthetic Biology. PMID 27111421 DOI: 10.1021/Acssynbio.5B00215 |
0.698 |
|
2015 |
Bartley B, Beal J, Clancy K, Misirli G, Roehner N, Oberortner E, Pocock M, Bissell M, Madsen C, Nguyen T, Zhang Z, Gennari JH, Myers C, Wipat A, Sauro H. Synthetic Biology Open Language (SBOL) Version 2.0.0. Journal of Integrative Bioinformatics. 12: 902-991. PMID 29220967 DOI: 10.1515/jib-2015-272 |
0.715 |
|
2015 |
Bartley B, Beal J, Clancy K, Misirli G, Roehner N, Oberortner E, Pocock M, Bissell M, Madsen C, Nguyen T, Zhang Z, Gennari JH, Myers C, Wipat A, Sauro H. Synthetic Biology Open Language (SBOL) Version 2.0.0. Journal of Integrative Bioinformatics. 12: 272. PMID 26528570 DOI: 10.1515/Jib-2016-291 |
0.733 |
|
2015 |
Kim KH, Choi K, Bartley B, Sauro HM. Controlling E. coli Gene Expression Noise. Ieee Transactions On Biomedical Circuits and Systems. PMID 26372647 DOI: 10.1109/Tbcas.2015.2461135 |
0.529 |
|
2014 |
Galdzicki M, Clancy KP, Oberortner E, Pocock M, Quinn JY, Rodriguez CA, Roehner N, Wilson ML, Adam L, Anderson JC, Bartley BA, Beal J, Chandran D, Chen J, Densmore D, et al. The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology. Nature Biotechnology. 32: 545-50. PMID 24911500 DOI: 10.1038/Nbt.2891 |
0.719 |
|
2012 |
Copeland WB, Bartley BA, Chandran D, Galdzicki M, Kim KH, Sleight SC, Maranas CD, Sauro HM. Computational tools for metabolic engineering. Metabolic Engineering. 14: 270-80. PMID 22629572 DOI: 10.1016/J.Ymben.2012.03.001 |
0.602 |
|
2010 |
Sleight SC, Bartley BA, Lieviant JA, Sauro HM. Designing and engineering evolutionary robust genetic circuits. Journal of Biological Engineering. 4: 12. PMID 21040586 DOI: 10.1186/1754-1611-4-12 |
0.54 |
|
2010 |
Sleight SC, Bartley BA, Lieviant JA, Sauro HM. In-Fusion BioBrick assembly and re-engineering. Nucleic Acids Research. 38: 2624-36. PMID 20385581 DOI: 10.1093/Nar/Gkq179 |
0.572 |
|
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