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Adam Yongxin Ye - Publications

Affiliations: 
2013-2018 Center for Bioinformatics Peking University, Beijing, Beijing Shi, China 
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Sharma P, Zhang X, Ly K, Zhang Y, Hu Y, Ye AY, Hu J, Kim JH, Lou M, Wang C, Celuzza Q, Kondo Y, Furukawa K, Bundle DR, Furukawa K, et al. The lipid globotriaosylceramide promotes germinal center B cell responses and antiviral immunity. Science (New York, N.Y.). 383: eadg0564. PMID 38359115 DOI: 10.1126/science.adg0564  0.334
2023 Sharma P, Zhang X, Ly K, Zhang Y, Hu Y, Ye AY, Hu J, Kim JH, Lou M, Wang C, Celuzza Q, Kondo Y, Furukawa K, Bundle DR, Furukawa K, et al. The lipid Gb3 promotes germinal center B cell responses and anti-viral immunity. Biorxiv : the Preprint Server For Biology. PMID 37790573 DOI: 10.1101/2023.09.23.559132  0.335
2023 Liang Z, Zhao L, Ye AY, Lin SG, Zhang Y, Guo C, Dai HQ, Ba Z, Alt FW. Contribution of the IGCR1 regulatory element and the 3' CTCF-binding elements to regulation of V(D)J recombination. Proceedings of the National Academy of Sciences of the United States of America. 120: e2306564120. PMID 37339228 DOI: 10.1073/pnas.2306564120  0.382
2022 Luo S, Jing C, Ye AY, Kratochvil S, Cottrell CA, Koo JH, Chapdelaine Williams A, Francisco LV, Batra H, Lamperti E, Kalyuzhniy O, Zhang Y, Barbieri A, Manis JP, Haynes BF, et al. Humanized V(D)J-rearranging and TdT-expressing mouse vaccine models with physiological HIV-1 broadly neutralizing antibody precursors. Proceedings of the National Academy of Sciences of the United States of America. 120: e2217883120. PMID 36574685 DOI: 10.1073/pnas.2217883120  0.37
2022 Zhang J, Li Z, Wu Y, Ye AY, Chen L, Yang X, Wu Q, Wei L. RJAfinder: An automated tool for quantification of responding to joint attention behaviors in autism spectrum disorder using eye tracking data. Frontiers in Neuroscience. 16: 915464. PMID 36466175 DOI: 10.3389/fnins.2022.915464  0.664
2022 Luo S, Zhang J, Kreutzberger AJB, Eaton A, Edwards RJ, Jing C, Dai HQ, Sempowski GD, Cronin K, Parks R, Ye AY, Mansouri K, Barr M, Pishesha N, Williams AC, et al. An Antibody from Single Human V-rearranging Mouse Neutralizes All SARS-CoV-2 Variants Through BA.5 by Inhibiting Membrane Fusion. Science Immunology. eadd5446. PMID 35951767 DOI: 10.1126/sciimmunol.add5446  0.376
2021 Liang Z, Kumar V, Le Bouteiller M, Zurita J, Kenrick J, Lin SG, Lou J, Hu J, Ye AY, Boboila C, Alt FW, Frock RL. Ku70 suppresses alternative end joining in G1-arrested progenitor B cells. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34006647 DOI: 10.1073/pnas.2103630118  0.721
2021 Dai HQ, Hu H, Lou J, Ye AY, Ba Z, Zhang X, Zhang Y, Zhao L, Yoon HS, Chapdelaine-Williams AM, Kyritsis N, Chen H, Johnson K, Lin S, Conte A, et al. Loop extrusion mediates physiological Igh locus contraction for RAG scanning. Nature. PMID 33442057 DOI: 10.1038/s41586-020-03121-7  0.477
2020 Ba Z, Lou J, Ye AY, Dai HQ, Dring EW, Lin SG, Jain S, Kyritsis N, Kieffer-Kwon KR, Casellas R, Alt FW. CTCF orchestrates long-range cohesin-driven V(D)J recombinational scanning. Nature. PMID 32717742 DOI: 10.1038/S41586-020-2578-0  0.392
2020 Chen H, Zhang Y, Ye AY, Du Z, Xu M, Lee CS, Hwang JK, Kyritsis N, Ba Z, Neuberg D, Littman DR, Alt FW. BCR selection and affinity maturation in Peyer's patch germinal centres. Nature. PMID 32499646 DOI: 10.1038/S41586-020-2262-4  0.468
2019 Zhao B, Wu Q, Ye AY, Guo J, Zheng X, Yang X, Yan L, Liu QR, Hyde TM, Wei L, Huang AY. Somatic LINE-1 retrotransposition in cortical neurons and non-brain tissues of Rett patients and healthy individuals. Plos Genetics. 15: e1008043. PMID 30973874 DOI: 10.1371/Journal.Pgen.1008043  0.764
2019 Yang X, Yang X, Chen J, Li S, Zeng Q, Huang AY, Ye AY, Yu Z, Wang S, Jiang Y, Wu X, Wu Q, Wei L, Zhang Y. ATP1A3 mosaicism in families with alternating hemiplegia of childhood. Clinical Genetics. PMID 30891744 DOI: 10.1111/Cge.13539  0.774
2019 Zhou WZ, Zhang J, Li Z, Lin X, Li J, Wang S, Yang C, Wu Q, Ye AY, Wang M, Wang D, Pu TZ, Wu YY, Wei L. Targeted resequencing of 358 candidate genes for autism spectrum disorder in a Chinese cohort reveals diagnostic potential and genotype-phenotype correlations. Human Mutation. PMID 30763456 DOI: 10.1002/Humu.23724  0.701
2018 Yang C, Li J, Wu Q, Yang X, Huang AY, Zhang J, Ye AY, Dou Y, Yan L, Zhou WZ, Kong L, Wang M, Ai C, Yang D, Wei L. AutismKB 2.0: a knowledgebase for the genetic evidence of autism spectrum disorder. Database : the Journal of Biological Databases and Curation. 2018. PMID 30339214 DOI: 10.1093/Database/Bay106  0.745
2018 Ye AY, Dou Y, Yang X, Wang S, Huang AY, Wei L. A model for postzygotic mosaicisms quantifies the allele fraction drift, mutation rate, and contribution to de novo mutations. Genome Research. PMID 29875290 DOI: 10.1101/Gr.230003.117  0.77
2018 Huang AY, Yang X, Wang S, Zheng X, Wu Q, Ye AY, Wei L. Distinctive types of postzygotic single-nucleotide mosaicisms in healthy individuals revealed by genome-wide profiling of multiple organs. Plos Genetics. 14: e1007395. PMID 29763432 DOI: 10.1371/Journal.Pgen.1007395  0.771
2017 Yang X, Liu A, Xu X, Yang X, Zeng Q, Ye AY, Yu Z, Wang S, Huang AY, Wu X, Wu Q, Wei L, Zhang Y. Genomic mosaicism in paternal sperm and multiple parental tissues in a Dravet syndrome cohort. Scientific Reports. 7: 15677. PMID 29142202 DOI: 10.1038/S41598-017-15814-7  0.78
2017 Dou Y, Yang X, Li Z, Wang S, Zhang Z, Ye AY, Yan L, Yang C, Wu Q, Li J, Zhao B, Huang AY, Wei L. Post-zygotic single-nucleotide mosaicisms contribute to the etiology of autism spectrum disorder and autistic traits and the origin of mutations. Human Mutation. PMID 28503910 DOI: 10.1002/Humu.23255  0.755
2017 Huang AY, Zhang Z, Ye AY, Dou Y, Yan L, Yang X, Zhang Y, Wei L. MosaicHunter: accurate detection of postzygotic single-nucleotide mosaicism through next-generation sequencing of unpaired, trio, and paired samples. Nucleic Acids Research. PMID 28132024 DOI: 10.1093/Nar/Gkx024  0.774
2015 Xu X, Yang X, Wu Q, Liu A, Yang X, Ye AY, Huang AY, Li J, Wang M, Yu Z, Wang S, Zhang Z, Wu X, Wei L, Zhang Y. Amplicon Resequencing Identified Parental Mosaicism for Approximately 10% of "de novo" SCN1A Mutations in Children with Dravet Syndrome. Human Mutation. PMID 26096185 DOI: 10.1002/Humu.22819  0.786
2015 Zhao HQ, Zhang P, Gao H, He X, Dou Y, Huang AY, Liu XM, Ye AY, Dong MQ, Wei L. Profiling the RNA editomes of wild-type C. elegans and ADAR mutants. Genome Research. 25: 66-75. PMID 25373143 DOI: 10.1101/Gr.176107.114  0.73
2014 Zhou WZ, Ye AY, Sun ZK, Tian HH, Pu TZ, Wu YY, Wang DD, Zhao MZ, Lu SJ, Yang CH, Wei L. Statistical analysis of twenty years (1993 to 2012) of data from mainland China's first intervention center for children with autism spectrum disorder. Molecular Autism. 5: 52. PMID 25694804 DOI: 10.1186/2040-2392-5-52  0.487
2014 Ding Y, Wang M, He Y, Ye AY, Yang X, Liu F, Meng Y, Gao G, Wei L. "Bioinformatics: introduction and methods," a bilingual Massive Open Online Course (MOOC) as a new example for global bioinformatics education. Plos Computational Biology. 10: e1003955. PMID 25503717 DOI: 10.1371/Journal.Pcbi.1003955  0.63
2014 Huang AY, Xu X, Ye AY, Wu Q, Yan L, Zhao B, Yang X, He Y, Wang S, Zhang Z, Gu B, Zhao HQ, Wang M, Gao H, Gao G, et al. Postzygotic single-nucleotide mosaicisms in whole-genome sequences of clinically unremarkable individuals. Cell Research. 24: 1311-27. PMID 25312340 DOI: 10.1038/Cr.2014.131  0.774
2014 Dong S, Walker MF, Carriero NJ, DiCola M, Willsey AJ, Ye AY, Waqar Z, Gonzalez LE, Overton JD, Frahm S, Keaney JF, Teran NA, Dea J, Mandell JD, Hus Bal V, et al. De novo insertions and deletions of predominantly paternal origin are associated with autism spectrum disorder. Cell Reports. 9: 16-23. PMID 25284784 DOI: 10.1016/J.Celrep.2014.08.068  0.728
2014 Ye AY, Liu QR, Li CY, Zhao M, Qu H. Human transporter database: comprehensive knowledge and discovery tools in the human transporter genes. Plos One. 9: e88883. PMID 24558441 DOI: 10.1371/Journal.Pone.0088883  0.591
2013 Huang Y, Xie C, Ye AY, Li CY, Gao G, Wei L. Recent adaptive events in human brain revealed by meta-analysis of positively selected genes. Plos One. 8: e61280. PMID 23593450 DOI: 10.1371/Journal.Pone.0061280  0.702
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