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Francesco Rubino, PhD (cand), MSc - Publications

Affiliations: 
2012- IBERS Aberystwyth University, Cymru, United Kingdom 
 2012- Teagasc 
Area:
Metagenomics, Metatranscriptomics, Rumen, Systems Biology, Bioinformatics
Website:
http://www.creeveylab.org/
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12 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Lawther K, Santos FG, Oyama LB, Rubino F, Morrison S, Creevey CJ, McGrath JW, Huws SA. Resistome Analysis of Global Livestock and Soil Microbiomes. Frontiers in Microbiology. 13: 897905. PMID 35875563 DOI: 10.3389/fmicb.2022.897905  0.534
2018 Rinke C, Rubino F, Messer LF, Youssef N, Parks DH, Chuvochina M, Brown M, Jeffries T, Tyson GW, Seymour JR, Hugenholtz P. A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.). The Isme Journal. PMID 30323263 DOI: 10.1038/S41396-018-0282-Y  0.344
2018 Wilkinson TJ, Huws SA, Edwards JE, Kingston-Smith AH, Siu-Ting K, Hughes M, Rubino F, Friedersdorff M, Creevey CJ. CowPI: A Rumen Microbiome Focussed Version of the PICRUSt Functional Inference Software. Frontiers in Microbiology. 9: 1095. PMID 29887853 DOI: 10.3389/Fmicb.2018.01095  0.58
2017 Lambert BS, Raina JB, Fernandez VI, Rinke C, Siboni N, Rubino F, Hugenholtz P, Tyson GW, Seymour JR, Stocker R. A microfluidics-based in situ chemotaxis assay to study the behaviour of aquatic microbial communities. Nature Microbiology. PMID 28848238 DOI: 10.1038/S41564-017-0010-9  0.311
2017 Rubino F, Carberry C, Waters SM, Kenny D, McCabe MS, Creevey CJ. Divergent functional isoforms drive niche specialisation for nutrient acquisition and use in rumen microbiome. The Isme Journal. 11: 1510. PMID 28507336 DOI: 10.1038/ismej.2017.34  0.576
2017 Rubino F, Carberry C, M Waters S, Kenny D, McCabe MS, Creevey CJ. Divergent functional isoforms drive niche specialisation for nutrient acquisition and use in rumen microbiome. The Isme Journal. PMID 28085156 DOI: 10.1038/Ismej.2016.172  0.617
2012 Pannarale P, Catalano D, De Caro G, Grillo G, Leo P, Pappadà G, Rubino F, Scioscia G, Licciulli F. GIDL: a rule based expert system for GenBank Intelligent Data Loading into the Molecular Biodiversity database Bmc Bioinformatics. 13. PMID 22536971 DOI: 10.1186/1471-2105-13-S4-S4  0.37
2012 Rubino F, Piredda R, Calabrese FM, Simone D, Lang M, Calabrese C, Petruzzella V, Tommaseo-Ponzetta M, Gasparre G, Attimonelli M. HmtDB, a genomic resource for mitochondrion-based human variability studies Nucleic Acids Research. 40: D1150-D1159. PMID 22139932 DOI: 10.1093/Nar/Gkr1086  0.374
2012 Licciulli F, Catalano D, D'Elia D, De Caro G, Grillo G, Leo P, Mulè G, Pannarale P, Pappadà G, Rubino F, Susca A, Vicario S, Scioscia G. MBLabDB: a social database for molecular biodiversity data Embnet.Journal. 18: 121. DOI: 10.14806/Ej.18.B.574  0.352
2009 Rubino F, Attimonelli M. RegExpBlasting (REB), a regular expression blasting algorithm based on multiply aligned sequences Bmc Bioinformatics. 10. PMID 19534754 DOI: 10.1186/1471-2105-10-S6-S5  0.352
2008 Rubino F, Voukelatou A, De Luca F, De Giorgi C, Attimonelli M. PPNEMA: A resource of plant-parasitic nematodes multialigned ribosomal cistrons. International Journal of Plant Genomics. 2008: 387812. PMID 18818776 DOI: 10.1155/2008/387812  0.334
2006 Accetturo M, Santamaria M, Lascaro D, Rubino F, Achilli A, Torroni A, Tommaseo-Ponzetta M, Attimonelli M. Human mtDNA site-specific variability values can act as haplogroup markers. Human Mutation. 27: 965-74. PMID 16865696 DOI: 10.1002/Humu.20365  0.307
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