Inanc Birol - Publications

Affiliations: 
Medical Genetics University of British Columbia, Vancouver, Vancouver, BC, Canada 
Area:
Bioinformatics, Genome Sequence Assembly

145 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Haile S, Corbett RD, LeBlanc VG, Wei L, Pleasance S, Bilobram S, Nip KM, Brown K, Trinh E, Smith J, Trinh DL, Bala M, Chuah E, Coope RJN, Moore RA, ... ... Birol I, et al. A Scalable Strand-Specific Protocol Enabling Full-Length Total RNA Sequencing From Single Cells. Frontiers in Genetics. 12: 665888. PMID 34149808 DOI: 10.3389/fgene.2021.665888  0.52
2021 Warren RL, Birol I. Interactive SARS-CoV-2 mutation timemaps. F1000research. 10: 68. PMID 34136131 DOI: 10.12688/f1000research.50857.2  0.4
2020 Warren RL, Birol I. Interactive SARS-CoV-2 mutation timemaps. Arxiv. PMID 33398246  0.4
2020 Warren RL, Birol I. Retrospective in silico HLA predictions from COVID-19 patients reveal alleles associated with disease prognosis. Medrxiv : the Preprint Server For Health Sciences. PMID 33140057 DOI: 10.1101/2020.10.27.20220863  0.4
2020 Warren RL, Birol I. HLA predictions from the bronchoalveolar lavage fluid and blood samples of eight COVID-19 patients at the pandemic onset. Bioinformatics (Oxford, England). PMID 32853340 DOI: 10.1093/Bioinformatics/Btaa756  0.4
2020 Nip KM, Chiu R, Yang C, Chu J, Mohamadi H, Warren RL, Birol I. RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes. Genome Research. PMID 32817073 DOI: 10.1101/Gr.260174.119  0.44
2020 Chu J, Mohamadi H, Erhan E, Tse J, Chiu R, Yeo S, Birol I. Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters. Proceedings of the National Academy of Sciences of the United States of America. PMID 32641514 DOI: 10.1073/Pnas.1903436117  0.44
2020 Warren RL, Birol I. HLA predictions from the bronchoalveolar lavage fluid samples of five patients at the early stage of the wuhan seafood market COVID-19 outbreak. Arxiv. PMID 32550246  0.4
2020 Hafezqorani S, Yang C, Lo T, Nip KM, Warren RL, Birol I. Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data. Gigascience. 9. PMID 32520350 DOI: 10.1093/Gigascience/Giaa061  0.4
2020 Jackman SD, Coombe L, Warren RL, Kirk H, Trinh E, MacLeod T, Pleasance S, Pandoh P, Zhao Y, Coope RJ, Bousquet J, Bohlmann J, Jones SJM, Birol I. Complete mitochondrial genome of a gymnosperm, Sitka spruce (Picea sitchensis), indicates a complex physical structure. Genome Biology and Evolution. PMID 32449750 DOI: 10.1093/Gbe/Evaa108  0.6
2020 Coombe L, Nikolić V, Chu J, Birol I, Warren RL. ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs. Bioinformatics (Oxford, England). PMID 32311025 DOI: 10.1093/Bioinformatics/Btaa253  0.44
2020 Lo T, Yang C, Nip KM, Hafezqorani S, Warren R, Birol İ. Meta-NanoSim: metagenome simulator for nanopore reads F1000research. 9. DOI: 10.7490/F1000Research.1118278.1  0.4
2020 Stephenson M, Nip KM, Hafezqorani S, Yang C, Gagalova K, Warren R, Birol İ. RNA-Scoop: interactive visualization of isoforms in single-cell transcriptomes F1000research. 9. DOI: 10.7490/F1000Research.1118187.1  0.4
2019 Kwan HH, Culibrk L, Taylor GA, Leelakumari S, Tan R, Jackman SD, Tse K, MacLeod T, Cheng D, Chuah E, Kirk H, Pandoh P, Carlsen R, Zhao Y, Mungall AJ, ... ... Birol I, et al. The Genome of the Steller Sea Lion (). Genes. 10. PMID 31248052 DOI: 10.3390/Genes10070486  0.6
2019 Lin D, Coombe L, Jackman SD, Gagalova KK, Warren RL, Hammond SA, McDonald H, Kirk H, Pandoh P, Zhao Y, Moore RA, Mungall AJ, Ritland C, Doerksen T, Jaquish B, ... ... Birol I, et al. Complete Chloroplast Genome Sequence of an Engelmann Spruce (, Genotype Se404-851) from Western Canada. Microbiology Resource Announcements. 8. PMID 31196920 DOI: 10.1128/MRA.00382-19  0.6
2019 Lin D, Coombe L, Jackman SD, Gagalova KK, Warren RL, Hammond SA, Kirk H, Pandoh P, Zhao Y, Moore RA, Mungall AJ, Ritland C, Jaquish B, Isabel N, Bousquet J, ... ... Birol I, et al. Complete Chloroplast Genome Sequence of a White Spruce (Picea glauca, Genotype WS77111) from Eastern Canada. Microbiology Resource Announcements. 8. PMID 31171622 DOI: 10.1128/MRA.00381-19  0.6
2019 Warren RL, Coombe L, Mohamadi H, Zhang J, Jaquish B, Isabel N, Jones SJM, Bousquet J, Bohlmann J, Birol I. ntEdit: scalable genome sequence polishing. Bioinformatics (Oxford, England). PMID 31095290 DOI: 10.1093/Bioinformatics/Btz400  0.52
2019 Jackman SD, Mozgacheva T, Chen S, O'Huiginn B, Bailey L, Birol I, Jones SJM. ORCA: A Comprehensive Bioinformatics Container Environment for Education and Research. Bioinformatics (Oxford, England). PMID 31004474 DOI: 10.1093/Bioinformatics/Btz278  0.6
2019 Thibodeau ML, Zhao EY, Reisle C, Ch'ng C, Wong HL, Shen Y, Jones MR, Lim HJ, Young S, Cremin C, Zhang W, Holt R, Eirew P, Karasinska J, Kalloger S, ... ... Birol I, et al. Base excision repair deficiency signatures implicate germline and somatic aberrations in pancreatic ductal adenocarcinoma and breast cancer oncogenesis. Cold Spring Harbor Molecular Case Studies. PMID 30833417 DOI: 10.1101/mcs.a003681  0.52
2019 Helbing CC, Hammond SA, Jackman SH, Houston S, Warren RL, Cameron CE, Birol I. Antimicrobial peptides from Rana [Lithobates] catesbeiana: Gene structure and bioinformatic identification of novel forms from tadpoles. Scientific Reports. 9: 1529. PMID 30728430 DOI: 10.1038/S41598-018-38442-1  0.4
2019 Jackman S, Chu J, Nikolić V, Afshinfard A, Coombe L, Dilek G, Palchowdhury S, Mohamadi H, Warren R, Bohlmann J, Birol İ. Physlr: Construct a physical map from linked reads F1000research. 8. DOI: 10.7490/F1000Research.1117235.1  0.44
2018 Taylor GA, Kirk H, Coombe L, Jackman SD, Chu J, Tse K, Cheng D, Chuah E, Pandoh P, Carlsen R, Zhao Y, Mungall AJ, Moore R, Birol I, Franke M, et al. The Genome of the North American Brown Bear or Grizzly: Ursus arctos ssp. horribilis. Genes. 9. PMID 30513700 DOI: 10.3390/Genes9120598  0.6
2018 Jackman SD, Coombe L, Chu J, Warren RL, Vandervalk BP, Yeo S, Xue Z, Mohamadi H, Bohlmann J, Jones SJM, Birol I. Tigmint: correcting assembly errors using linked reads from large molecules. Bmc Bioinformatics. 19: 393. PMID 30367597 DOI: 10.1186/s12859-018-2425-6  0.6
2018 Chiu R, Nip KM, Chu J, Birol I. TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data. Bmc Medical Genomics. 11: 79. PMID 30200994 DOI: 10.1186/S12920-018-0402-6  0.44
2018 Xue Z, Warren RL, Gibb EA, MacMillan D, Wong J, Chiu R, Hammond SA, Yang C, Nip KM, Ennis CA, Hahn A, Reynolds S, Birol I. Recurrent tumor-specific regulation of alternative polyadenylation of cancer-related genes. Bmc Genomics. 19: 536. PMID 30005633 DOI: 10.1186/S12864-018-4903-7  0.4
2018 Coombe L, Zhang J, Vandervalk BP, Chu J, Jackman SD, Birol I, Warren RL. ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers. Bmc Bioinformatics. 19: 234. PMID 29925315 DOI: 10.1186/S12859-018-2243-X  0.6
2018 Feau N, Beauseigle S, Bergeron MJ, Bilodeau GJ, Birol I, Cervantes-Arango S, Dhillon B, Dale AL, Herath P, Jones SJM, Lamarche J, Ojeda DI, Sakalidis ML, Taylor G, Tsui CKM, et al. Genome-Enhanced Detection and Identification (GEDI) of plant pathogens. Peerj. 6: e4392. PMID 29492338 DOI: 10.7717/Peerj.4392  0.52
2018 Jackman SD, Coombe L, Chu J, Warren RL, Vandervalk BP, Yeo S, Xue Z, Mohamadi H, Bohlmann J, Jones SJM, Birol İ. Tigmint: correct assembly errors using linked reads from large molecules F1000research. 7. DOI: 10.7490/F1000Research.1115395.1  0.6
2017 Khan H, Mohamadi H, Vandervalk BP, Warren RL, Chu J, Birol I. ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data. Bioinformatics (Oxford, England). PMID 29300846 DOI: 10.1093/Bioinformatics/Btx839  0.44
2017 Jones SJM, Taylor GA, Chan S, Warren RL, Hammond SA, Bilobram S, Mordecai G, Suttle CA, Miller KM, Schulze A, Chan AM, Jones SJ, Tse K, Li I, Cheung D, ... ... Birol I, et al. The Genome of the Beluga Whale (Delphinapterus leucas). Genes. 8. PMID 29232881 DOI: 10.3390/Genes8120378  0.52
2017 Jones SJ, Haulena M, Taylor GA, Chan S, Bilobram S, Warren RL, Hammond SA, Mungall KL, Choo C, Kirk H, Pandoh P, Ally A, Dhalla N, Tam AKY, Troussard A, ... ... Birol I, et al. The Genome of the Northern Sea Otter (Enhydra lutris kenyoni). Genes. 8. PMID 29232880 DOI: 10.3390/Genes8120379  0.52
2017 Hammond SA, Warren RL, Vandervalk BP, Kucuk E, Khan H, Gibb EA, Pandoh P, Kirk H, Zhao Y, Jones M, Mungall AJ, Coope R, Pleasance S, Moore RA, Holt RA, ... ... Birol I, et al. The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA. Nature Communications. 8: 1433. PMID 29127278 DOI: 10.1038/S41467-017-01316-7  0.44
2017 Yeo S, Coombe L, Chu J, Warren RL, Birol I. ARCS: Scaffolding Genome Drafts with Linked Reads. Bioinformatics (Oxford, England). PMID 29069293 DOI: 10.1093/Bioinformatics/Btx675  0.44
2017 Hasan NA, Warren RL, Epperson LE, Malecha A, Alexander DC, Turenne CY, MacMillan D, Birol I, Pleasance S, Coope R, Jones SJM, Romney MG, Ng M, Chan T, Rodrigues M, et al. Complete Genome Sequence of Mycobacterium chimaera SJ42, a Nonoutbreak Strain from an Immunocompromised Patient with Pulmonary Disease. Genome Announcements. 5. PMID 28912319 DOI: 10.1128/Genomea.00963-17  0.52
2017 Kucuk E, Chu J, Vandervalk BP, Austin Hammond S, Warren RL, Birol I. Kollector: transcript-informed, targeted de novo assembly of gene loci. Bioinformatics (Oxford, England). 33: 2789. PMID 28903539 DOI: 10.1093/bioinformatics/btx405  0.44
2017 Mohamadi H, Khan H, Birol I. ntCard: a streaming algorithm for cardinality estimation in genomics data. Bioinformatics (Oxford, England). 33: 1324-1330. PMID 28453674 DOI: 10.1093/Bioinformatics/Btw832  0.44
2017 Yang C, Chu J, Warren RL, Birol I. NanoSim: nanopore sequence read simulator based on statistical characterization. Gigascience. PMID 28327957 DOI: 10.1093/Gigascience/Gix010  0.44
2017 Jackman SD, Vandervalk BP, Mohamadi H, Chu J, Yeo S, Hammond SA, Jahesh G, Khan H, Coombe L, Warren RL, Birol I. ABySS 2.0: Resource-efficient assembly of large genomes using a Bloom filter. Genome Research. PMID 28232478 DOI: 10.1101/Gr.214346.116  0.6
2017 Kucuk E, Chu J, Vandervalk BP, Austin Hammond S, Warren RL, Birol I. Kollector: transcript-informed, targeted de novo assembly of gene loci. Bioinformatics (Oxford, England). PMID 28186221 DOI: 10.1093/Bioinformatics/Btx078  0.44
2017 Mohamadi H, Khan H, Birol I. ntCard: A streaming algorithm for cardinality estimation in genomics data. Bioinformatics (Oxford, England). PMID 28057681 DOI: 10.1093/bioinformatics/btw832  0.44
2017 Jackman SD, Vandervalk BP, Warren RL, Mohamadi H, Chu J, Yeo S, Coombe L, Bohlmann J, Jones SJM, Birol I. Tigmint: correct misassemblies using linked reads from large molecules F1000research. 6. DOI: 10.7490/F1000Research.1114646.1  0.6
2017 Chu J, Coombe L, Yeo S, Vandervalk B, Warren R, Jackman S, Küçük E, Birol I. 10x genomics chromium targetted molecule assembly and genome scaffolding F1000research. 6. DOI: 10.7490/F1000Research.1113689.1  0.44
2017 Jackman SD, Vandervalk BP, Warren RL, Mohamadi H, Chu J, Yeo S, Coombe L, Pleasance S, Coope RJ, Bohlmann J, Jones SJ, Birol İ. Mitochondrial genome of Sitka spruce assembled using chromium reads F1000research. 6. DOI: 10.7490/F1000Research.1113648.1  0.6
2016 Chu J, Mohamadi H, Warren RL, Yang C, Birol I. Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art. Bioinformatics (Oxford, England). PMID 28003261 DOI: 10.1093/Bioinformatics/Btw811  0.44
2016 Coombe L, Warren RL, Jackman SD, Yang C, Vandervalk BP, Moore RA, Pleasance S, Coope RJ, Bohlmann J, Holt RA, Jones SJ, Birol I. Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics' GemCode Sequencing Data. Plos One. 11: e0163059. PMID 27632164 DOI: 10.1371/Journal.Pone.0163059  0.6
2016 Mohamadi H, Chu J, Vandervalk BP, Birol I. ntHash: recursive nucleotide hashing. Bioinformatics (Oxford, England). PMID 27423894 DOI: 10.1093/Bioinformatics/Btw397  0.44
2016 Morrissy AS, Garzia L, Shih DJ, Zuyderduyn S, Huang X, Skowron P, Remke M, Cavalli FM, Ramaswamy V, Lindsay PE, Jelveh S, Donovan LK, Wang X, Luu B, Zayne K, ... ... Birol I, et al. Divergent clonal selection dominates medulloblastoma at recurrence. Nature. PMID 26760213 DOI: 10.1038/Nature16478  0.84
2015 Jackman SD, Warren RL, Gibb EA, Vandervalk BP, Mohamadi H, Chu J, Raymond A, Pleasance S, Coope R, Wildung MR, Ritland CE, Bousquet J, Jones SJ, Bohlmann J, Birol I. Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation. Genome Biology and Evolution. PMID 26645680 DOI: 10.7490/F1000Research.1112919.1  0.6
2015 Birol I, Chu J, Mohamadi H, Jackman SD, Raghavan K, Vandervalk BP, Raymond A, Warren RL. Spaced Seed Data Structures for De Novo Assembly. International Journal of Genomics. 2015: 196591. PMID 26539459 DOI: 10.1155/2015/196591  0.84
2015 Vandervalk BP, Yang C, Xue Z, Raghavan K, Chu J, Mohamadi H, Jackman SD, Chiu R, Warren RL, Birol I. Konnector v2.0: pseudo-long reads from paired-end sequencing data. Bmc Medical Genomics. 8: S1. PMID 26399504 DOI: 10.1186/1755-8794-8-S3-S1  0.84
2015 Chu A, Robertson G, Brooks D, Mungall AJ, Birol I, Coope R, Ma Y, Jones S, Marra MA. Large-scale profiling of microRNAs for The Cancer Genome Atlas. Nucleic Acids Research. PMID 26271990 DOI: 10.1093/Nar/Gkv808  0.84
2015 Warren RL, Yang C, Vandervalk BP, Behsaz B, Lagman A, Jones SJ, Birol I. LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads. Gigascience. 4: 35. PMID 26244089 DOI: 10.1186/S13742-015-0076-3  0.84
2015 Paulino D, Warren RL, Vandervalk BP, Raymond A, Jackman SD, Birol I. Sealer: a scalable gap-closing application for finishing draft genomes. Bmc Bioinformatics. 16: 230. PMID 26209068 DOI: 10.1186/S12859-015-0663-4  0.6
2015 Birol I, Behsaz B, Hammond SA, Kucuk E, Veldhoen N, Helbing CC. De novo Transcriptome Assemblies of Rana (Lithobates) catesbeiana and Xenopus laevis Tadpole Livers for Comparative Genomics without Reference Genomes. Plos One. 10: e0130720. PMID 26121473 DOI: 10.1371/Journal.Pone.0130720  0.84
2015 Jackman SD, Bohlmann J, Birol İ. UniqTag: Content-Derived Unique and Stable Identifiers for Gene Annotation. Plos One. 10: e0128026. PMID 26020645 DOI: 10.1371/Journal.Pone.0128026  0.6
2015 Warren RL, Keeling CI, Yuen MM, Raymond A, Taylor GA, Vandervalk BP, Mohamadi H, Paulino D, Chiu R, Jackman SD, Robertson G, Yang C, Boyle B, Hoffmann M, Weigel D, ... ... Birol I, et al. Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism. The Plant Journal : For Cell and Molecular Biology. 83: 189-212. PMID 26017574 DOI: 10.1111/Tpj.12886  0.84
2015 Mohamadi H, Vandervalk BP, Raymond A, Jackman SD, Chu J, Breshears CP, Birol I. DIDA: Distributed Indexing Dispatched Alignment. Plos One. 10: e0126409. PMID 25923767 DOI: 10.1371/Journal.Pone.0126409  0.84
2015 Shoshan E, Mobley AK, Braeuer RR, Kamiya T, Huang L, Vasquez ME, Salameh A, Lee HJ, Kim SJ, Ivan C, Velazquez-Torres G, Nip KM, Zhu K, Brooks D, Jones SJ, ... Birol I, et al. Reduced adenosine-to-inosine miR-455-5p editing promotes melanoma growth and metastasis. Nature Cell Biology. 17: 311-21. PMID 25686251 DOI: 10.1038/Ncb3110  0.84
2015 . Comprehensive genomic characterization of head and neck squamous cell carcinomas. Nature. 517: 576-82. PMID 25631445 DOI: 10.1038/Nature14129  0.84
2015 Birol I, Raymond A, Chiu R, Nip KM, Jackman SD, Kreitzman M, Docking TR, Ennis CA, Robertson AG, Karsan A. Kleat: cleavage site analysis of transcriptomes. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 347-58. PMID 25592595  0.6
2015 Jackman S, Raghavan K, Vandervalk B, Paulino D, Chu J, Mohamadi H, Raymond A, Warren R, Birol I. Scaling ABySS to longer reads using spaced k -mers and Bloom filters F1000research. 6. DOI: 10.7490/F1000Research.1097878.1  0.44
2015 Jackman SD, Bohlmann J, Birol I. UniqTag: Content-derived unique and stable identifiers for gene annotation Plos One. 10. DOI: 10.1371/journal.pone.0128026  0.84
2015 Paulino D, Warren RL, Vandervalk BP, Raymond A, Jackman SD, Birol I. Sealer: A scalable gap-closing application for finishing draft genomes Bmc Bioinformatics. 16. DOI: 10.1186/s12859-015-0663-4  0.84
2014 De La Torre AR, Birol I, Bousquet J, Ingvarsson PK, Jansson S, Jones SJ, Keeling CI, MacKay J, Nilsson O, Ritland K, Street N, Yanchuk A, Zerbe P, Bohlmann J. Insights into conifer giga-genomes. Plant Physiology. 166: 1724-32. PMID 25349325 DOI: 10.1104/Pp.114.248708  0.84
2014 Chu J, Sadeghi S, Raymond A, Jackman SD, Nip KM, Mar R, Mohamadi H, Butterfield YS, Robertson AG, Birol I. BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters. Bioinformatics (Oxford, England). 30: 3402-4. PMID 25143290 DOI: 10.1093/Bioinformatics/Btu558  0.84
2014 . Comprehensive molecular characterization of gastric adenocarcinoma. Nature. 513: 202-9. PMID 25079317 DOI: 10.1038/Nature13480  0.84
2014 Butterfield YS, Kreitzman M, Thiessen N, Corbett RD, Li Y, Pang J, Ma YP, Jones SJ, Birol Ä°. JAGuaR: junction alignments to genome for RNA-seq reads. Plos One. 9: e102398. PMID 25062255 DOI: 10.1371/Journal.Pone.0102398  0.84
2014 Stival Sena J, Giguère I, Boyle B, Rigault P, Birol I, Zuccolo A, Ritland K, Ritland C, Bohlmann J, Jones S, Bousquet J, Mackay J. Evolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size. Bmc Plant Biology. 14: 95. PMID 24734980 DOI: 10.1186/1471-2229-14-95  0.84
2014 Jackman S, Vandervalk B, Raymond A, Mohamadi H, Yang C, Attali D, Chu J, Warren R, Birol I. ABySS-Konnector: connect paired-end reads by navigating a Bloom filter de Bruijn graph F1000research. 5. DOI: 10.7490/F1000Research.1096524.1  0.44
2014 Birol I, Mohamadi H, Raymond A, Raghavan K, Chu J, Vandervalk BP, Jackman SD, Warren RL. Spaced seed data structures Proceedings - 2014 Ieee International Conference On Bioinformatics and Biomedicine, Ieee Bibm 2014. 15-22. DOI: 10.1109/BIBM.2014.6999305  0.84
2014 Vandervalk BP, Jackman SD, Raymond A, Mohamadi H, Yang C, Attali DA, Chu J, Warren RL, Birol I. Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph Proceedings - 2014 Ieee International Conference On Bioinformatics and Biomedicine, Ieee Bibm 2014. 51-58. DOI: 10.1109/BIBM.2014.6999126  0.84
2013 Bosdet IE, Docking TR, Butterfield YS, Mungall AJ, Zeng T, Coope RJ, Yorida E, Chow K, Bala M, Young SS, Hirst M, Birol I, Moore RA, Jones SJ, Marra MA, et al. A clinically validated diagnostic second-generation sequencing assay for detection of hereditary BRCA1 and BRCA2 mutations. The Journal of Molecular Diagnostics : Jmd. 15: 796-809. PMID 24094589 DOI: 10.1016/J.Jmoldx.2013.07.004  0.84
2013 Jjingo D, Wang J, Conley AB, Lunyak VV, Jordan IK, Birol I. Compound cis-regulatory elements with both boundary and enhancer sequences in the human genome Bioinformatics. 29: 3109-3112. PMID 24085569 DOI: 10.1093/Bioinformatics/Btt542  0.84
2013 Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, Ellrott K, Shmulevich I, Sander C, Stuart JM. The Cancer Genome Atlas Pan-Cancer analysis project. Nature Genetics. 45: 1113-20. PMID 24071849 DOI: 10.1038/Ng.2764  0.84
2013 Lenassi M, Gostinčar C, Jackman S, Turk M, Sadowski I, Nislow C, Jones S, Birol I, Cimerman NG, Plemenitaš A. Whole Genome Duplication and Enrichment of Metal Cation Transporters Revealed by De Novo Genome Sequencing of Extremely Halotolerant Black Yeast Hortaea werneckii Plos One. 8. PMID 23977017 DOI: 10.1371/Journal.Pone.0071328  0.84
2013 Swanson L, Robertson G, Mungall KL, Butterfield YS, Chiu R, Corbett RD, Docking TR, Hogge D, Jackman SD, Moore RA, Mungall AJ, Nip KM, Parker JD, Qian JQ, Raymond A, ... ... Birol I, et al. Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies. Bmc Genomics. 14: 550. PMID 23941359 DOI: 10.1186/1471-2164-14-550  0.84
2013 Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, et al. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience. 2: 10. PMID 23870653 DOI: 10.1186/2047-217X-2-10  0.6
2013 Haridas S, Wang Y, Lim L, Massoumi Alamouti S, Jackman S, Docking R, Robertson G, Birol I, Bohlmann J, Breuil C. The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera. Bmc Genomics. 14: 373. PMID 23725015 DOI: 10.1186/1471-2164-14-373  0.84
2013 Hadj Khodabakhshi A, Fejes AP, Birol I, Jones SJM. Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline Bmc Bioinformatics. 14. PMID 23714400 DOI: 10.1186/1471-2105-14-167  0.84
2013 Morin RD, Mungall K, Pleasance E, Mungall AJ, Goya R, Huff RD, Scott DW, Ding J, Roth A, Chiu R, Corbett RD, Chan FC, Mendez-Lago M, Trinh DL, Bolger-Munro M, ... ... Birol I, et al. Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing. Blood. 122: 1256-65. PMID 23699601 DOI: 10.1182/Blood-2013-02-483727  0.84
2013 Birol I, Raymond A, Jackman SD, Pleasance S, Coope R, Taylor GA, Yuen MM, Keeling CI, Brand D, Vandervalk BP, Kirk H, Pandoh P, Moore RA, Zhao Y, Mungall AJ, et al. Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data. Bioinformatics (Oxford, England). 29: 1492-7. PMID 23698863 DOI: 10.1093/Bioinformatics/Btt178  0.84
2013 Kandoth C, Schultz N, Cherniack AD, Akbani R, Liu Y, Shen H, Robertson AG, Pashtan I, Shen R, Benz CC, Yau C, Laird PW, Ding L, Zhang W, et al. Integrated genomic characterization of endometrial carcinoma. Nature. 497: 67-73. PMID 23636398 DOI: 10.1038/Nature12113  0.84
2013 Ley TJ, Miller C, Ding L, Raphael BJ, Mungall AJ, Robertson G, Hoadley K, Triche TJ, Laird PW, Baty JD, Fulton LL, Fulton R, Heath SE, Kalicki-Veizer J, Kandoth C, ... ... Birol I, et al. Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia New England Journal of Medicine. 368: 2059-2074. PMID 23634996 DOI: 10.1056/Nejmoa1301689  0.84
2013 Kasaian K, Wiseman SM, Thiessen N, Mungall KL, Corbett RD, Qian JQ, Nip KM, He A, Tse K, Chuah E, Varhol RJ, Pandoh P, McDonald H, Zeng T, Tam A, ... ... Birol I, et al. Complete genomic landscape of a recurring sporadic parathyroid carcinoma. The Journal of Pathology. 230: 249-60. PMID 23616356 DOI: 10.1002/Path.4203  0.84
2013 Keeling CI, Yuen MM, Liao NY, Docking TR, Chan SK, Taylor GA, Palmquist DL, Jackman SD, Nguyen A, Li M, Henderson H, Janes JK, Zhao Y, Pandoh P, Moore R, ... ... Birol I, et al. Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest. Genome Biology. 14: R27. PMID 23537049 DOI: 10.1186/Gb-2013-14-3-R27  0.84
2013 Pugh TJ, Morozova O, Attiyeh EF, Asgharzadeh S, Wei JS, Auclair D, Carter SL, Cibulskis K, Hanna M, Kiezun A, Kim J, Lawrence MS, Lichenstein L, McKenna A, Pedamallu CS, ... ... Birol I, et al. The genetic landscape of high-risk neuroblastoma. Nature Genetics. 45: 279-84. PMID 23334666 DOI: 10.1038/Ng.2529  0.84
2012 Khodabakhshi AH, Morin RD, Fejes AP, Mungall AJ, Mungall KL, Bolger-Munro M, Johnson NA, Connors JM, Gascoyne RD, Marra MA, Birol I, Jones SJM. Recurrent targets of aberrant somatic hypermutation in lymphoma Oncotarget. 3: 1308-1319. PMID 23131835 DOI: 10.18632/Oncotarget.653  0.84
2012 Hammerman PS, Voet D, Lawrence MS, Jing R, Cibulskis K, Sivachenko A, Stojanov P, McKenna A, Lander ES, Gabriel S, Getz G, Imielinski M, Helman E, Hernandez B, Pho NH, ... ... Birol I, et al. Comprehensive genomic characterization of squamous cell lung cancers Nature. 489: 519-525. PMID 22960745 DOI: 10.1038/Nature11404  0.84
2012 Roberts KG, Morin RD, Zhang J, Hirst M, Zhao Y, Su X, Chen SC, Payne-Turner D, Churchman ML, Harvey RC, Chen X, Kasap C, Yan C, Becksfort J, Finney RP, ... ... Birol I, et al. Genetic alterations activating kinase and cytokine receptor signaling in high-risk acute lymphoblastic leukemia. Cancer Cell. 22: 153-66. PMID 22897847 DOI: 10.1016/J.Ccr.2012.06.005  0.84
2012 Northcott PA, Shih DJ, Peacock J, Garzia L, Morrissy AS, Zichner T, Stütz AM, Korshunov A, Reimand J, Schumacher SE, Beroukhim R, Ellison DW, Marshall CR, Lionel AC, Mack S, ... ... Birol I, et al. Subgroup-specific structural variation across 1,000 medulloblastoma genomes. Nature. 488: 49-56. PMID 22832581 DOI: 10.1038/Nature11327  0.84
2012 Muzny DM, Bainbridge MN, Chang K, Dinh HH, Drummond JA, Fowler G, Kovar CL, Lewis LR, Morgan MB, Newsham IF, Reid JG, Santibanez J, Shinbrot E, Trevino LR, Wu YQ, ... ... Birol I, et al. Comprehensive molecular characterization of human colon and rectal cancer Nature. 487: 330-337. PMID 22810696 DOI: 10.1038/Nature11252  0.84
2012 Yorukoglu D, Hach F, Swanson L, Collins CC, Birol I, Cenk Sahinalp S. Dissect: Detection and characterization of novel structural alterations in transcribed sequences Bioinformatics. 28: i179-i187. PMID 22689759 DOI: 10.1093/Bioinformatics/Bts214  0.84
2012 Keeling CI, Henderson H, Li M, Yuen M, Clark EL, Fraser JD, Huber DP, Liao NY, Docking TR, Birol I, Chan SK, Taylor GA, Palmquist D, Jones SJ, Bohlmann J. Transcriptome and full-length cDNA resources for the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major insect pest of pine forests. Insect Biochemistry and Molecular Biology. 42: 525-36. PMID 22516182 DOI: 10.1016/J.Ibmb.2012.03.010  0.84
2012 Shah SP, Roth A, Goya R, Oloumi A, Ha G, Zhao Y, Turashvili G, Ding J, Tse K, Haffari G, Bashashati A, Prentice LM, Khattra J, Burleigh A, Yap D, ... ... Birol I, et al. The clonal and mutational evolution spectrum of primary triple-negative breast cancers. Nature. 486: 395-9. PMID 22495314 DOI: 10.1038/Nature10933  0.84
2012 Krzywinski M, Birol I, Jones SJ, Marra MA. Hive plots-rational approach to visualizing networks Briefings in Bioinformatics. 13: 627-644. PMID 22155641 DOI: 10.1093/Bib/Bbr069  0.84
2012 Yip S, Butterfield YS, Morozova O, Chittaranjan S, Blough MD, An J, Birol I, Chesnelong C, Chiu R, Chuah E, Corbett R, Docking R, Firme M, Hirst M, Jackman S, et al. Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers. The Journal of Pathology. 226: 7-16. PMID 22072542 DOI: 10.1002/Path.2995  0.84
2012 Koboldt DC, Fulton RS, McLellan MD, Schmidt H, Kalicki-Veizer J, McMichael JF, Fulton LL, Dooling DJ, Ding L, Mardis ER, Wilson RK, Ally A, Balasundaram M, Butterfield YSN, Carlsen R, ... ... Birol I, et al. Comprehensive molecular portraits of human breast tumours Nature. 490: 61-70. DOI: 10.1038/Nature11412  0.84
2011 Chu Y, Gao P, Zhao P, He Y, Liao N, Jackman S, Zhao Y, Birol I, Duan X, Lu Z. Genome sequence of mycoplasma capricolum subsp. capripneumoniae strain M1601 Journal of Bacteriology. 193: 6098-6099. PMID 21994928 DOI: 10.1128/Jb.05980-11  0.84
2011 Earl D, Bradnam K, St John J, Darling A, Lin D, Fass J, Yu HO, Buffalo V, Zerbino DR, Diekhans M, Nguyen N, Ariyaratne PN, Sung WK, Ning Z, Haimel M, et al. Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Research. 21: 2224-41. PMID 21926179 DOI: 10.1101/Gr.126599.111  0.84
2011 Chan QWT, Cornman RS, Birol I, Liao NY, Chan SK, Docking TR, Jackman SD, Taylor GA, Jones SJM, de Graaf DC, Evans JD, Foster LJ. Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees Bmc Genomics. 12. PMID 21923906 DOI: 10.1186/1471-2164-12-450  0.84
2011 Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, ... ... Birol I, et al. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma Nature. 476: 298-303. PMID 21796119 DOI: 10.1038/Nature10351  0.84
2011 Geraldes A, Pang J, Thiessen N, Cezard T, Moore R, Zhao Y, Tam A, Wang S, Friedmann M, Birol I, Jones SJ, Cronk QC, Douglas CJ. SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing. Molecular Ecology Resources. 11: 81-92. PMID 21429165 DOI: 10.1111/J.1755-0998.2010.02960.X  0.84
2011 Fejes AP, Khodabakhshi AH, Birol I, Jones SJM. Human variation database: An open-source database template for genomic discovery Bioinformatics. 27: 1155-1156. PMID 21367872 DOI: 10.1093/Bioinformatics/Btr100  0.84
2011 Gardy JL, Johnston JC, Ho Sui SJ, Cook VJ, Shah L, Brodkin E, Rempel S, Moore R, Zhao Y, Holt R, Varhol R, Birol I, Lem M, Sharma MK, Elwood K, et al. Whole-genome sequencing and social-network analysis of a tuberculosis outbreak. The New England Journal of Medicine. 364: 730-9. PMID 21345102 DOI: 10.1056/Nejmoa1003176  0.84
2011 DiGuistini S, Wang Y, Liao NY, Taylor G, Tanguay P, Feau N, Henrissat B, Chan SK, Hesse-Orce U, Alamouti SM, Tsui CK, Docking RT, Levasseur A, Haridas S, Robertson G, ... Birol I, et al. Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen. Proceedings of the National Academy of Sciences of the United States of America. 108: 2504-9. PMID 21262841 DOI: 10.1073/Pnas.1011289108  0.84
2010 Robertson G, Schein J, Chiu R, Corbett R, Field M, Jackman SD, Mungall K, Lee S, Okada HM, Qian JQ, Griffith M, Raymond A, Thiessen N, Cezard T, Butterfield YS, ... ... Birol I, et al. De novo assembly and analysis of RNA-seq data. Nature Methods. 7: 909-12. PMID 20935650 DOI: 10.1038/Nmeth.1517  0.84
2010 Jones SJ, Laskin J, Li YY, Griffith OL, An J, Bilenky M, Butterfield YS, Cezard T, Chuah E, Corbett R, Fejes AP, Griffith M, Yee J, Martin M, Mayo M, ... ... Birol I, et al. Evolution of an adenocarcinoma in response to selection by targeted kinase inhibitors. Genome Biology. 11: R82. PMID 20696054 DOI: 10.1186/Gb-2010-11-8-R82  0.84
2010 Hach F, Hormozdiari F, Alkan C, Hormozdiari F, Birol I, Eichler EE, Sahinalp SC. mrsFAST: a cache-oblivious algorithm for short-read mapping. Nature Methods. 7: 576-7. PMID 20676076 DOI: 10.1038/Nmeth0810-576  0.84
2010 Hoffman BG, Robertson G, Zavaglia B, Beach M, Cullum R, Lee S, Soukhatcheva G, Li L, Wederell ED, Thiessen N, Bilenky M, Cezard T, Tam A, Kamoh B, Birol I, et al. Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver. Genome Research. 20: 1037-51. PMID 20551221 DOI: 10.1101/Gr.104356.109  0.84
2010 Atanur SS, Birol I, Guryev V, Hirst M, Hummel O, Morrissey C, Behmoaras J, Fernandez-Suarez XM, Johnson MD, McLaren WM, Patone G, Petretto E, Plessy C, Rockland KS, Rockland C, et al. The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance. Genome Research. 20: 791-803. PMID 20430781 DOI: 10.1101/Gr.103499.109  0.84
2010 Hajirasouliha I, Hormozdiari F, Alkan C, Kidd JM, Birol I, Eichler EE, Sahinalp SC. Detection and characterization of novel sequence insertions using paired-end next-generation sequencing. Bioinformatics (Oxford, England). 26: 1277-83. PMID 20385726 DOI: 10.1093/Bioinformatics/Btq152  0.84
2010 Jackman SD, Birol I. Assembling genomes using short-read sequencing technology Genome Biology. 11. PMID 20128932 DOI: 10.1186/Gb-2010-11-1-202  0.84
2010 Morin RD, Johnson NA, Severson TM, Mungall AJ, An J, Goya R, Paul JE, Boyle M, Woolcock BW, Kuchenbauer F, Yap D, Humphries RK, Griffith OL, Shah S, Zhu H, ... ... Birol I, et al. Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin. Nature Genetics. 42: 181-5. PMID 20081860 DOI: 10.1038/ng.518  0.84
2010 Wong RTF, Flibotte S, Corbett R, Saeedi P, Jones SJM, Marra MA, Schein JE, Birol I. LaneRuler: Automated lane tracking for dna electrophoresis gel images Ieee Transactions On Automation Science and Engineering. 7: 706-708. DOI: 10.1109/Tase.2009.2035437  0.84
2009 Nielsen CB, Jackman SD, Birol I, Jones SJM. ABySS-explorer: Visualizing genome sequence assemblies Ieee Transactions On Visualization and Computer Graphics. 15: 881-888. PMID 19834150 DOI: 10.1109/Tvcg.2009.116  0.84
2009 Diguistini S, Liao NY, Platt D, Robertson G, Seidel M, Chan SK, Docking TR, Birol I, Holt RA, Hirst M, Mardis E, Marra MA, Hamelin RC, Bohlmann J, Breuil C, et al. De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data. Genome Biology. 10: R94. PMID 19747388 DOI: 10.1186/Gb-2009-10-9-R94  0.84
2009 Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA. Circos: An information aesthetic for comparative genomics Genome Research. 19: 1639-1645. PMID 19541911 DOI: 10.1101/Gr.092759.109  0.84
2009 Birol I, Jackman SD, Nielsen CB, Qian JQ, Varhol R, Stazyk G, Morin RD, Zhao Y, Hirst M, Schein JE, Horsman DE, Connors JM, Gascoyne RD, Marra MA, Jones SJM. De novo transcriptome assembly with ABySS Bioinformatics. 25: 2872-2877. PMID 19528083 DOI: 10.1093/Bioinformatics/Btp367  0.84
2009 Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJM, Birol I. ABySS: A parallel assembler for short read sequence data Genome Research. 19: 1117-1123. PMID 19251739 DOI: 10.1101/Gr.089532.108  0.84
2009 Mungall AJ, Chu A, Chiu R, Corbett R, Field MA, Jackman SD, Mungall KL, Wong K, Boyle M, Carlsen R, Chan SY, Coope RJN, Hirst CA, Hirst M, Johnson N, ... ... Birol I, et al. Base-Pair Resolution of Somatic and Germline-Derived Genome Rearrangement Breakpoints in Follicular Lymphoma. Blood. 114: 439-439. DOI: 10.1182/Blood.V114.22.439.439  0.6
2008 Robertson AG, Bilenky M, Tam A, Zhao Y, Zeng T, Thiessen N, Cezard T, Fejes AP, Wederell ED, Cullum R, Euskirchen G, Krzywinski M, Birol I, Snyder M, Hoodless PA, et al. Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding Genome Research. 18: 1906-1917. PMID 18787082 DOI: 10.1101/Gr.078519.108  0.84
2008 Hajirasouliha I, Hormozdiari F, Sahinalp SC, Birol I. Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies. Bioinformatics (Oxford, England). 24: i32-40. PMID 18586730 DOI: 10.1093/bioinformatics/btn173  0.84
2005 Tatara E, Birol I, Teymour F, Cinar A. Agent-based control of discrete spatially distributed systems Ifac Proceedings Volumes (Ifac-Papersonline). 16: 549-554. DOI: 10.3182/20050703-6-Cz-1902.01665  0.84
2005 Tatara E, Birol I, Çinar A, Teymour F. Measuring complexity in reactor networks with cubic autocatalytic reactions Industrial and Engineering Chemistry Research. 44: 2781-2791. DOI: 10.1021/Ie049246T  0.84
2005 Tatara E, Birol I, Teymour F, Çinar A. Agent-based control of autocatalytic replicators in networks of reactors Computers and Chemical Engineering. 29: 807-815. DOI: 10.1016/J.Compchemeng.2004.09.022  0.84
2004 Ünel G, Birol I, Ballestrero S. The trigger and DAQ systems of the Na59 experiment Ieee Transactions On Nuclear Science. 51: 1482-1487. DOI: 10.1109/TNS.2004.832303  0.84
2004 Ünel G, Birol I, Eichblatt S. Software aspects of the Na59 experiment Ieee Transactions On Nuclear Science. 51: 1449-1455. DOI: 10.1109/TNS.2004.832297  0.84
2004 Tatara E, Birol I, Teymour F, Çinar A. Static and dynamic behavior of autocatalytic replicators in reactor networks Industrial and Engineering Chemistry Research. 43: 3972-3993. DOI: 10.1021/Ie030802D  0.84
2003 Chaivorapoj W, Birol I, Çinar A, Teymour F. Feedback control of a continuous-flow stirred tank reactor with competing autocatalators Industrial and Engineering Chemistry Research. 42: 3765-3785. DOI: 10.1021/Ie020427+  0.84
2003 Birol G, Birol I, Kirdar B, Önsan ZI. Investigating the fermentation dynamics structure of recombinant yeast YPB-G Computers and Chemical Engineering. 27: 45-54. DOI: 10.1016/S0098-1354(02)00217-X  0.84
2002 Birol I, Parulekar SJ, Teymour F. Effect of environment partitioning on the survival and coexistence of autocatalytic replicators. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 66: 051916. PMID 12513532 DOI: 10.1103/Physreve.66.051916  0.84
2002 Birol I, Parulekar SJ, Teymour F. Effect of environment partitioning on the survival and coexistence of autocatalytic replicators Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 66: 051916/1-051916/19. DOI: 10.1103/PhysRevE.66.051916  0.84
2002 Chaivorapoj W, Birol I, Teymour F. Competition between robust and nonrobust autocatalytic replicators Industrial and Engineering Chemistry Research. 41: 3630-3641. DOI: 10.1021/Ie010302P  0.84
2002 Papavasiliou G, Birol I, Teymour F. Calculation of molecular weight distributions in non-linear free-radical polymerization using the numerical fractionation technique Macromolecular Theory and Simulations. 11: 533-548. DOI: 10.1002/1521-3919(20020601)11:5<533::Aid-Mats533>3.0.Co;2-O  0.84
2001 Birol G, Birol I, Çinar A. Student-performance enhancement by cross-course project assignments: A case study in bioengineering and process modelling Chemical Engineering Education. 35: 128-133.  0.84
2000 Birol I, Teymour F. Statics and dynamics of multiple cubic autocatalytic reactions Physica D: Nonlinear Phenomena. 144: 279-297. DOI: 10.1016/S0167-2789(00)00085-3  0.84
1998 Birol I, Hacinliyan A, Ziya Perdahçi N. Simulating a dynamical system in the presence of a 1/f noise International Journal of Engineering Science. 36: 265-271. DOI: 10.1016/S0020-7225(97)00067-0  0.84
1997 Birol G, Birol I, Kirdar B, Önsan ZI. Modeling of recombinant yeast cells: Reduction of phase space Biomedical Sciences Instrumentation. 34: 163-168. PMID 9603032  0.84
1997 Birol I, Hacinliyan A. Some algebraic properties of continuous time dynamical systems International Journal of Modern Physics A. 12: 137-142. DOI: 10.1142/S0217751X97000177  0.84
1997 Birol I, Hacinliyan A. Determining zero Lyapunov exponents in continuous time dynamical systems International Journal of Modern Physics A. 12: 131-135. DOI: 10.1142/S0217751X97000165  0.84
1997 Birol I, Hacinliyan A. Signs and approximate magnitudes of Lyapunov exponents in continuous time dynamical systems Journal of Mathematical Physics. 38: 4594-4605. DOI: 10.1063/1.532109  0.84
1997 Birol I, Hacinliyan A. Algebraic approach to the calculation of lyapunov exponents Turkish Journal of Physics. 21: 281-288.  0.84
1997 Birol I, Edgü E. Parameter dependent study of Liapunov exponents in Lorenz and Rössler systems Turkish Journal of Physics. 21: 1233-1245.  0.84
1995 Birol I, Hacinliyan A. Approximately conserved quantity in the Hénon-Heiles problem. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 52: 4750-4753. PMID 9963971 DOI: 10.1103/Physreve.52.4750  0.64
1995 Birol I, Hacinliyan A. Approximately conserved quantity in the Hénon-Heiles problem Physical Review E. 52: 4750-4753. DOI: 10.1103/PhysRevE.52.4750  0.84
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