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Xiaotao Wang - Publications

Affiliations: 
Fudan University, China 
Area:
Computational Biology
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21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Xie T, Danieli-Mackay A, Buccarelli M, Barbieri M, Papadionysiou I, D'Alessandris QG, Robens C, Übelmesser N, Vinchure OS, Lauretti L, Fotia G, Schwarz RF, Wang X, Ricci-Vitiani L, Gopalakrishnan J, et al. Pervasive structural heterogeneity rewires glioblastoma chromosomes to sustain patient-specific transcriptional programs. Nature Communications. 15: 3905. PMID 38724522 DOI: 10.1038/s41467-024-48053-2  0.343
2024 Wang X, Yue F. Hijacked enhancer-promoter and silencer-promoter loops in cancer. Current Opinion in Genetics & Development. 86: 102199. PMID 38669773 DOI: 10.1016/j.gde.2024.102199  0.573
2024 Kim M, Wang P, Clow P, Chien I, Wang X, Peng J, Chai H, Liu X, Lee B, Ngan CY, Yue F, Milenkovic O, Chuang JH, Wei CL, Casellas R, et al. Multifaceted roles of cohesin in regulating transcriptional loops. Biorxiv : the Preprint Server For Biology. PMID 38585764 DOI: 10.1101/2024.03.25.586715  0.508
2023 Fu Y, Wang X, Yue F. EagleC Explorer: A desktop application for interactively detecting and visualizing SVs and enhancer hijacking on Hi-C contact maps. Biorxiv : the Preprint Server For Biology. PMID 37609202 DOI: 10.1101/2023.08.07.552228  0.52
2023 Wang X, Yue F. HiCLift: A fast and efficient tool for converting chromatin interaction data between genome assemblies. Bioinformatics (Oxford, England). PMID 37335863 DOI: 10.1093/bioinformatics/btad389  0.591
2023 Liu T, Wang J, Yang H, Jin Q, Wang X, Fu Y, Luan Y, Wang Q, Youngblood MW, Lu X, Casadei L, Pollock R, Yue F. Enhancer co-amplification and hijacking promote oncogene expression in liposarcoma. Cancer Research. PMID 36847778 DOI: 10.1158/0008-5472.CAN-22-1858  0.605
2023 Wang X, Yue F. HiCLift: A fast and efficient tool for converting chromatin interaction data between genome assemblies. Biorxiv : the Preprint Server For Biology. PMID 36712087 DOI: 10.1101/2023.01.17.524475  0.591
2022 Luo Z, Xia M, Shi W, Zhao C, Wang J, Xin D, Dong X, Xiong Y, Zhang F, Berry K, Ogurek S, Liu X, Rao R, Xing R, Wu LMN, ... ... Wang X, et al. Human fetal cerebellar cell atlas informs medulloblastoma origin and oncogenesis. Nature. PMID 36450980 DOI: 10.1038/s41586-022-05487-2  0.495
2022 Xu J, Song F, Lyu H, Kobayashi M, Zhang B, Zhao Z, Hou Y, Wang X, Luan Y, Jia B, Stasiak L, Wong JH, Wang Q, Jin Q, Jin Q, et al. Subtype-specific 3D genome alteration in acute myeloid leukaemia. Nature. PMID 36289338 DOI: 10.1038/s41586-022-05365-x  0.592
2022 Wang X, Luan Y, Yue F. EagleC: A deep-learning framework for detecting a full range of structural variations from bulk and single-cell contact maps. Science Advances. 8: eabn9215. PMID 35704579 DOI: 10.1126/sciadv.abn9215  0.567
2021 Zhang H, Song L, Wang X, Cheng H, Wang C, Meyer CA, Liu T, Tang M, Aluru S, Yue F, Liu XS, Li H. Fast alignment and preprocessing of chromatin profiles with Chromap. Nature Communications. 12: 6566. PMID 34772935 DOI: 10.1038/s41467-021-26865-w  0.561
2021 Strom AR, Biggs RJ, Banigan EJ, Wang X, Chiu K, Herman C, Collado J, Yue F, Ritland Politz JC, Tait LJ, Scalzo D, Telling A, Groudine M, Brangwynne CP, Marko JF, et al. HP1α is a chromatin crosslinker that controls nuclear and mitotic chromosome mechanics. Elife. 10. PMID 34106828 DOI: 10.7554/eLife.63972  0.487
2021 Wang X, Xu J, Zhang B, Hou Y, Song F, Lyu H, Yue F. Genome-wide detection of enhancer-hijacking events from chromatin interaction data in rearranged genomes. Nature Methods. 18: 661-668. PMID 34092790 DOI: 10.1038/s41592-021-01164-w  0.625
2021 Iyyanki T, Zhang B, Wang Q, Hou Y, Jin Q, Xu J, Yang H, Liu T, Wang X, Song F, Luan Y, Yamashita H, Chien R, Lyu H, Zhang L, et al. Subtype-associated epigenomic landscape and 3D genome structure in bladder cancer. Genome Biology. 22: 105. PMID 33858483 DOI: 10.1186/s13059-021-02325-y  0.601
2020 Yang H, Luan Y, Liu T, Lee HJ, Fang L, Wang Y, Wang X, Zhang B, Jin Q, Ang KC, Xing X, Wang J, Xu J, Song F, Sriranga I, et al. A map of cis-regulatory elements and 3D genome structures in zebrafish. Nature. PMID 33239788 DOI: 10.1038/s41586-020-2962-9  0.608
2020 Salameh TJ, Wang X, Song F, Zhang B, Wright SM, Khunsriraksakul C, Ruan Y, Yue F. A supervised learning framework for chromatin loop detection in genome-wide contact maps. Nature Communications. 11: 3428. PMID 32647330 DOI: 10.1038/s41467-020-17239-9  0.605
2019 Xie T, Zhang FG, Zhang HY, Wang XT, Hu JH, Wu XM. Biased gene retention during diploidization in Brassica linked to three-dimensional genome organization. Nature Plants. PMID 31383969 DOI: 10.1038/s41477-019-0479-8  0.386
2016 Tao JF, Zhou JZ, Xie T, Wang XT, Yang QY, Zhang HY. Influence of chromatin 3D organization on structural variations of the Arabidopsis thaliana genome. Molecular Plant. PMID 27742489 DOI: 10.1016/j.molp.2016.09.015  0.357
2016 Xie T, Yang QY, Wang XT, McLysaght A, Zhang HY. Spatial Colocalization of Human Ohnolog Pairs Acts to Maintain Dosage-Balance. Molecular Biology and Evolution. PMID 27297469 DOI: 10.1093/Molbev/Msw108  0.31
2015 Wang XT, Dong PF, Zhang HY, Peng C. Structural heterogeneity and functional diversity of topologically associating domains in mammalian genomes. Nucleic Acids Research. PMID 26150425 DOI: 10.1093/nar/gkv684  0.359
2013 Peng C, Fu LY, Dong PF, Deng ZL, Li JX, Wang XT, Zhang HY. The sequencing bias relaxed characteristics of Hi-C derived data and implications for chromatin 3D modeling. Nucleic Acids Research. 41: e183. PMID 23965308 DOI: 10.1093/nar/gkt745  0.34
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