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Paul M. Gasper - Publications

Affiliations: 
2013 Chemistry University of California, San Diego, La Jolla, CA 
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9 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Yu AM, Gasper PM, Cheng L, Lai LB, Kaur S, Gopalan V, Chen AA, Lucks JB. Computationally reconstructing cotranscriptional RNA folding from experimental data reveals rearrangement of non-native folding intermediates. Molecular Cell. PMID 33453165 DOI: 10.1016/j.molcel.2020.12.017  0.535
2016 Takahashi MK, Watters KE, Gasper PM, Abbott TR, Carlson PD, Chen AA, Lucks JB. Using in-cell SHAPE-Seq and simulations to probe structure-function design principles of RNA transcriptional regulators. Rna (New York, N.Y.). PMID 27103533 DOI: 10.1261/Rna.054916.115  0.534
2015 Gasper PM, Chen AA. Sequence Specificity in RNA-Mediated Transcriptional Attenuation Examined by Coarse-Grained MD Simulations Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.1314  0.543
2013 Miao Y, Nichols SE, Gasper PM, Metzger VT, McCammon JA. Activation and dynamic network of the M2 muscarinic receptor. Proceedings of the National Academy of Sciences of the United States of America. 110: 10982-7. PMID 23781107 DOI: 10.1073/pnas.1309755110  0.55
2013 Fuglestad B, Gasper PM, McCammon JA, Markwick PR, Komives EA. Correlated motions and residual frustration in thrombin. The Journal of Physical Chemistry. B. 117: 12857-63. PMID 23621631 DOI: 10.1021/Jp402107U  0.554
2013 Gasper PM, McCammon JA. Protein Kinase G Ligand Binding Specificity via Confine-And-Release Thermodynamic Integration Biophysical Journal. 104: 556a. DOI: 10.1016/J.Bpj.2012.11.3083  0.51
2012 Gasper PM, Fuglestad B, Komives EA, Markwick PR, McCammon JA. Allosteric networks in thrombin distinguish procoagulant vs. anticoagulant activities. Proceedings of the National Academy of Sciences of the United States of America. 109: 21216-22. PMID 23197839 DOI: 10.1073/Pnas.1218414109  0.54
2012 Fuglestad B, Gasper PM, Tonelli M, McCammon JA, Markwick PR, Komives EA. The dynamic structure of thrombin in solution. Biophysical Journal. 103: 79-88. PMID 22828334 DOI: 10.1016/J.Bpj.2012.05.047  0.504
2012 Gasper PM, Markwick PR, McCammon JA. Accelerated Molecular Dynamics Simulations of Thrombin-Thrombomodulin Reveal Potential for Entropic Allostery Biophysical Journal. 102: 735a-736a. DOI: 10.1016/J.Bpj.2011.11.3992  0.573
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