Daniel Russel, Ph.D.

Affiliations: 
2007 Stanford University, Palo Alto, CA 
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"Daniel Russel"

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Leonidas Guibas grad student 2007 Stanford
 (Kinetic data structures in practice.)
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Publications

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Bonomi M, Pellarin R, Kim SJ, et al. (2014) Determining protein complex structures based on a Bayesian model of in vivo Förster resonance energy transfer (FRET) data. Molecular & Cellular Proteomics : McP. 13: 2812-23
Russel D, Lasker K, Webb B, et al. (2012) Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies. Plos Biology. 10: e1001244
Webb B, Lasker K, Schneidman-Duhovny D, et al. (2011) Modeling of proteins and their assemblies with the integrative modeling platform. Methods in Molecular Biology (Clifton, N.J.). 781: 377-97
Lasker K, Phillips JL, Russel D, et al. (2010) Integrative structure modeling of macromolecular assemblies from proteomics data. Molecular & Cellular Proteomics : McP. 9: 1689-702
Russel D, Lasker K, Phillips J, et al. (2009) The structural dynamics of macromolecular processes. Current Opinion in Cell Biology. 21: 97-108
Russel D, Karavelas MI, Guibas LJ. (2007) A package for exact kinetic data structures and sweepline algorithms. Computational Geometry : Theory and Applications. 38: 111-127
Aishima J, Russel DS, Guibas LJ, et al. (2005) Automated crystallographic ligand building using the medial axis transform of an electron-density isosurface. Acta Crystallographica. Section D, Biological Crystallography. 61: 1354-63
Russel D, Guibas L. (2005) Exploring protein folding trajectories using geometric spanners. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 40-51
Agarwal P, Guibas L, Nguyen A, et al. (2004) Collision detection for deforming necklaces Computational Geometry: Theory and Applications. 28: 137-163
Guibas L, Karavelas MI, Russel D. (2004) A computational framework for handling motion Proceedings of the Sixth Workshop On Algorithm Engineering and Experiments and the First Workshop On Analytic Algorithms and Combinatorics. 129-141
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