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Katherine A. Yelick

Affiliations: 
Electrical Engineering and Computer Science University of California, Berkeley, Berkeley, CA, United States 
Area:
Programming Systems (PS); Scientific Computing (SCI); Biosystems & Computational Biology (BIO); parallel programming techniques
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"Katherine Yelick"
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Parents

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John V. Guttag grad student 1990 MIT
 (Using Abstraction in Explicitly Parallel Programs)

Children

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Alok Tripathy grad student
Arvind Krishnamurthy grad student 1998 UC Berkeley
Eun-Jin Im grad student 2000 UC Berkeley
Richard W. Vuduc grad student 1997-2004 UC Berkeley (MathTree)
Wei-Yu Chen grad student 2007 UC Berkeley
Kaushik Datta grad student 2009 UC Berkeley
Rajesh Nishtala grad student 2009 UC Berkeley
Jimmy Z. Su grad student 2010 UC Berkeley
Amir A. Kamil grad student 2012 UC Berkeley
Giulia Guidi grad student 2018-2022 LBNL/UC Berkeley

Collaborators

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Publications

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Meyer F, Fritz A, Deng ZL, et al. (2022) Critical Assessment of Metagenome Interpretation: the second round of challenges. Nature Methods. 19: 429-440
Awan MG, Deslippe J, Buluc A, et al. (2020) ADEPT: a domain independent sequence alignment strategy for gpu architectures. Bmc Bioinformatics. 21: 406
Hofmeyr S, Egan R, Georganas E, et al. (2020) Terabase-scale metagenome coassembly with MetaHipMer. Scientific Reports. 10: 10689
Alexander F, Almgren A, Bell J, et al. (2020) Exascale applications: skin in the game. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 378: 20190056
Yelick K, Buluç A, Awan M, et al. (2020) The parallelism motifs of genomic data analysis. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 378: 20190394
Chapman JA, Mascher M, Buluç A, et al. (2015) A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome. Genome Biology. 16: 26
Shan H, Williams S, Zheng Y, et al. (2015) Implementing High-Performance Geometric Multigrid Solver with Naturally Grained Messages Proceedings - 2015 9th International Conference On Partitioned Global Address Space Programming Models, Pgas 2015. 38-46
Shan H, Kamil A, Williams S, et al. (2014) Evaluation of PGAS communication paradigms with geometric multigrid Acm International Conference Proceeding Series. 2014
Kamil A, Zheng Y, Yelick K. (2014) A local-view array library for partitioned global address space C++ programs Proceedings of the Acm Sigplan Conference On Programming Language Design and Implementation (Pldi). 26-31
Ibrahim KZ, Yelick K. (2014) On the conditions for efficient interoperability with threads: An experience with PGAS languages using Cray communication domains Proceedings of the International Conference On Supercomputing. 23-32
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