Sebastien J. Roch, Ph.D.
Affiliations: | 2007 | University of California, Berkeley, Berkeley, CA, United States |
Area:
Biosystems & Computational Biology (BIO); Theory (THY)Google:
"Sebastien Roch"Parents
Sign in to add mentor| Elchanan Mossel | grad student | 2007 | UC Berkeley | |
| (Markov models on trees: Reconstruction and applications.) | ||||
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Publications
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| Tabatabaee Y, Roch S, Warnow T. (2023) QR-STAR: A Polynomial-Time Statistically Consistent Method for Rooting Species Trees Under the Coalescent. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology |
| Hill M, Roch S. (2022) Inconsistency of Triplet-Based and Quartet-Based Species Tree Estimation under Intralocus Recombination. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology |
| Dasarathy G, Mossel E, Nowak R, et al. (2022) A stochastic Farris transform for genetic data under the multispecies coalescent with applications to data requirements. Journal of Mathematical Biology. 84: 36 |
| Legried B, Molloy EK, Warnow T, et al. (2020) Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 28: 452-468 |
| Fan WL, Legried B, Roch S. (2020) Impossibility of Consistent Distance Estimation from Sequence Lengths Under the TKF91 Model. Bulletin of Mathematical Biology. 82: 123 |
| Fan WT, Roch S. (2020) Statistically consistent and computationally efficient inference of ancestral DNA sequences in the TKF91 model under dense taxon sampling. Bulletin of Mathematical Biology. 82: 21 |
| Roch S, Nute M, Warnow T. (2019) Long-Branch Attraction in Species Tree Estimation: Inconsistency of Partitioned Likelihood and Topology-Based Summary Methods. Systematic Biology. 68: 281-297 |
| Roch S, Rohe K. (2018) Generalized least squares can overcome the critical threshold in respondent-driven sampling. Proceedings of the National Academy of Sciences of the United States of America. 115: 10299-10304 |
| Rosen Z, Bhaskar A, Roch S, et al. (2018) Geometry of the Sample Frequency Spectrum and the Perils of Demographic Inference. Genetics |
| Shekhar S, Roch S, Mirarab S. (2018) Species Tree Estimation Using ASTRAL: How Many Genes Are Enough? Ieee/Acm Transactions On Computational Biology and Bioinformatics. 15: 1738-1747 |