Marghoob Mohiyuddin, Ph.D.
Affiliations: | 2012 | Electrical Engineering & Computer Sciences | University of California, Berkeley, Berkeley, CA, United States |
Area:
Computer Architecture & Engineering (ARC)Google:
"Marghoob Mohiyuddin"Parents
Sign in to add mentor| John Wawrzynek | grad student | 2012 | UC Berkeley | |
| (Tuning Hardware and Software for Multiprocessors.) | ||||
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Publications
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| Olson ND, Wagner J, McDaniel J, et al. (2022) PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions. Cell Genomics. 2 |
| Fang LT, Zhu B, Zhao Y, et al. (2021) Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing. Nature Biotechnology. 39: 1151-1160 |
| Li J, Niu L, Greene N, et al. (2020) Ephesus: A curation workflow tool for the clinical interpretation of genomic variants. Journal of Clinical Oncology. 38 |
| Fuentes RR, Chebotarov D, Duitama J, et al. (2019) Structural variants in 3000 rice genomes. Genome Research |
| Sahraeian SME, Liu R, Lau B, et al. (2019) Deep convolutional neural networks for accurate somatic mutation detection. Nature Communications. 10: 1041 |
| Yao L, Mohiyuddin M, Lam H. (2019) Abstract LB-213: ecTMB: A robust method to estimate and classify tumor mutational burden Cancer Research. 79 |
| Fang LT, Mohiyuddin M, Fu Y, et al. (2017) Abstract 386: OnkoInsight: an end-to-end cancer informatics pipeline to generate insights from large sequencing datasets Cancer Research. 77: 386-386 |
| Lau B, Mohiyuddin M, Mu JC, et al. (2016) LongISLND: In silico Sequencing of Lengthy and Noisy Datatypes. Bioinformatics (Oxford, England) |
| Parikh H, Mohiyuddin M, Lam HY, et al. (2016) svclassify: a method to establish benchmark structural variant calls. Bmc Genomics. 17: 64 |
| Mu JC, Tootoonchi Afshar P, Mohiyuddin M, et al. (2015) Leveraging long read sequencing from a single individual to provide a comprehensive resource for benchmarking variant calling methods. Scientific Reports. 5: 14493 |