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Thomas Ioerger

Affiliations: 
Texas A & M University, College Station, TX, United States 
Area:
Computer Science
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"Thomas Ioerger"
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Jianwen Yin grad student 2001 Texas A & M
Dwi H. Widyantoro grad student 2003 Texas A & M
Kreshna Gopal grad student 2007 Texas A & M
Victor Palmer grad student 2007 Texas A & M
Reetal P. Karkala grad student 2009 Texas A & M
Michael A DeJesus grad student 2010-2016 Texas A & M

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Publications

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Choudhery S, DeJesus MA, Srinivasan A, et al. (2024) A dose-response model for statistical analysis of chemical genetic interactions in CRISPRi screens. Plos Computational Biology. 20: e1011408
Choudhery S, DeJesus MA, Srinivasan A, et al. (2023) A dose-response based model for statistical analysis of chemical genetic interactions in CRISPRi libraries. Biorxiv : the Preprint Server For Biology
Ioerger TR. (2022) Analysis of Gene Essentiality from TnSeq Data Using Transit. Methods in Molecular Biology (Clifton, N.J.). 2377: 391-421
Choudhery S, Brown AJ, Akusobi C, et al. (2021) Modeling Site-Specific Nucleotide Biases Affecting Himar1 Transposon Insertion Frequencies in TnSeq Data Sets. Msystems. e0087621
Dutta E, DeJesus MA, Ruecker N, et al. (2021) An improved statistical method to identify chemical-genetic interactions by exploiting concentration-dependence. Plos One. 16: e0257911
Subramaniyam S, DeJesus MA, Zaveri A, et al. (2019) Statistical analysis of variability in TnSeq data across conditions using zero-inflated negative binomial regression. Bmc Bioinformatics. 20: 603
Farhat MR, Freschi L, Calderon R, et al. (2019) GWAS for quantitative resistance phenotypes in Mycobacterium tuberculosis reveals resistance genes and regulatory regions. Nature Communications. 10: 2128
Tiwari D, Park SW, Essawy MM, et al. (2018) Targeting protein biotinylation enhances tuberculosis chemotherapy. Science Translational Medicine. 10
Negri A, Javidnia P, Mu R, et al. (2018) Identification of a Mycothiol-Dependent Nitroreductase from Mycobacterium tuberculosis. Acs Infectious Diseases
Xu W, DeJesus MA, Rücker N, et al. (2017) Chemical genomic interaction profiling reveals determinants of intrinsic antibiotic resistance in Mycobacterium tuberculosis. Antimicrobial Agents and Chemotherapy
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