John E. Karro, Ph.D.
Affiliations: | 2000 | University of Virginia, Charlottesville, VA |
Area:
Computer ScienceGoogle:
"John Karro"Parents
Sign in to add mentor| James Cohoon | grad student | 2000 | UVA | |
| (Algorithmic and theoretical problems related to the physical design of three dimensional field programmable gate arrays.) | ||||
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Publications
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| Schaeffer CE, Figueroa ND, Liu X, et al. (2016) phRAIDER: Pattern-Hunter based Rapid Ab Initio Detection of Elementary Repeats. Bioinformatics (Oxford, England). 32: i209-i215 |
| Morton JT, Abrudan P, Figueroa N, et al. (2014) SCOPE++: sequence classification of homoPolymer emissions. Genomics. 104: 157-62 |
| Sreeskandarajan S, Flowers MM, Karro JE, et al. (2014) A MATLAB-based tool for accurate detection of perfect overlapping and nested inverted repeats in DNA sequences. Bioinformatics (Oxford, England). 30: 887-8 |
| Zhou S, Ji G, Liu X, et al. (2012) Pattern analysis approach reveals restriction enzyme cutting abnormalities and other cDNA library construction artifacts using raw EST data. Bmc Biotechnology. 12: 16 |
| Rao DM, Moler JC, Ozden M, et al. (2010) PEACE: Parallel Environment for Assembly and Clustering of Gene Expression Nucleic Acids Research. 38: W737-W742 |
| Imamura H, Karro JE, Chuang JH. (2009) Weak preservation of local neutral substitution rates across mammalian genomes. Bmc Evolutionary Biology. 9: 89 |
| Tyekucheva S, Makova KD, Karro JE, et al. (2008) Human-macaque comparisons illuminate variation in neutral substitution rates. Genome Biology. 9: R76 |
| Karro JE, Peifer M, Hardison RC, et al. (2008) Exponential decay of GC content detected by strand-symmetric substitution rates influences the evolution of isochore structure. Molecular Biology and Evolution. 25: 362-74 |
| Gibbs RA, Rogers J, et al. (2007) Evolutionary and biomedical insights from the rhesus macaque genome. Science (New York, N.Y.). 316: 222-34 |
| Karro JE, Yan Y, Zheng D, et al. (2007) Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation. Nucleic Acids Research. 35: D55-60 |