Usman W. Roshan, Ph.D.
Affiliations: | 2004 | University of Texas at Austin, Austin, Texas, U.S.A. |
Area:
Computer ScienceGoogle:
"Usman Roshan"Parents
Sign in to add mentor| Tandy Jo Warnow | grad student | 2004 | UT Austin | |
| (Algorithmic techniques for improving the speed and accuracy of phylogenetic methods.) | ||||
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Publications
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| Aljouie A, Zhong L, Roshan U. (2020) High scoring segment selection for pairwise whole genome sequence alignment with the maximum scoring subsequence and GPUs International Journal of Computational Biology and Drug Design. 13: 71-81 |
| Turki T, Roshan U. (2014) MaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequence Bmc Genomics. 15: 969-969 |
| Roshan U. (2014) Multiple sequence alignment using probcons and probalign Methods of Molecular Biology. 1079: 147-153 |
| Chikkagoudar S, Livesay DR, Roshan U. (2010) PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences Nucleic Acids Research. 38: 59-63 |
| Roshan U, Chikkagoudar S, Livesay DR. (2008) Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities. Bmc Bioinformatics. 9: 61-61 |
| Livesay DR, Kidd PD, Eskandari S, et al. (2007) Assessing the ability of sequence-based methods to provide functional insight within membrane integral proteins: a case study analyzing the neurotransmitter/Na+ symporter family. Bmc Bioinformatics. 8: 397 |
| Chikkagoudar S, Roshan U, Livesay DR. (2007) eProbalign: generation and manipulation of multiple sequence alignments using partition function posterior probabilities Nucleic Acids Research. 35: 675-677 |
| Dotsenko Y, Coarfa C, Nakhleh L, et al. (2006) PRec-I-DCM3: a parallel framework for fast and accurate large-scale phylogeny reconstruction. International Journal of Bioinformatics Research and Applications. 2: 407-19 |
| Roshan U, Livesay DR. (2006) Probalign: multiple sequence alignment using partition function posterior probabilities Bioinformatics. 22: 2715-2721 |
| Bader DA, Roshan U, Stamatakis A. (2006) Computational Grand Challenges in Assembling the Tree of Life: Problems and Solutions Advances in Computers. 68: 127-176 |