Alexey Onufriev

Virginia Polytechnic and State University, United States 
General Biophysics, Computer Science
"Alexey Onufriev"
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Anandakrishnan R, Izadi S, Onufriev AV. (2018) Why computed protein folding landscapes are sensitive to the water model. Journal of Chemical Theory and Computation
Fenley AT, Anandakrishnan R, Kidane YH, et al. (2018) Modulation of nucleosomal DNA accessibility via charge-altering post-translational modifications in histone core. Epigenetics & Chromatin. 11: 11
Katkova EV, Onufriev AV, Aguilar B, et al. (2017) Accuracy comparison of several common implicit solvent models and their implementations in the context of protein-ligand binding. Journal of Molecular Graphics & Modelling. 72: 70-80
Izadi S, Anandakrishnan R, Onufriev AV. (2016) Implicit Solvent Simulation of Million-Atom Structures: Insights into the Organization of 30-nm Chromatin Fiber. Journal of Chemical Theory and Computation
Drozdetski AV, Tolokh IS, Pollack L, et al. (2016) Opposing Effects of Multivalent Ions on the Flexibility of DNA and RNA. Physical Review Letters. 117: 028101
Pabit SA, Katz AM, Tolokh IS, et al. (2016) Understanding nucleic acid structural changes by comparing wide-angle x-ray scattering (WAXS) experiments to molecular dynamics simulations. The Journal of Chemical Physics. 144: 205102
Sushko ML, Thomas DG, Pabit SA, et al. (2016) The Role of Correlation and Solvation in Ion Interactions with B-DNA. Biophysical Journal. 110: 315-26
Tolokh IS, Drozdetski AV, Pollack L, et al. (2016) Multi-shell model of ion-induced nucleic acid condensation Journal of Chemical Physics. 144
Izadi S, Aguilar B, Onufriev AV. (2015) Protein-Ligand Electrostatic Binding Free Energies from Explicit and Implicit Solvation. Journal of Chemical Theory and Computation. 11: 4450-9
Kinney NA, Onufriev AV, Sharakhov IV. (2015) Quantified effects of chromosome-nuclear envelope attachments on 3D organization of chromosomes. Nucleus (Austin, Tex.). 6: 212-24
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