Ferhat Ay, Ph.D.

Affiliations: 
2011 University of Florida, Gainesville, Gainesville, FL, United States 
Area:
Computer Engineering, Computer Science, Bioinformatics Biology
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"Ferhat Ay"

Parents

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Manolis Kellis grad student MIT (Computational Biology Tree)
Tamer Kahveci grad student 2011 University of Florida
 (A comparative study on biological networks: Alignment and structural properties.)
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Publications

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Rivera-Mulia JC, Kim S, Gabr H, et al. (2019) Replication timing networks reveal a link between transcription regulatory circuits and replication timing control. Genome Research
Zhang S, Wang Y, Jia L, et al. (2019) Profiling the long noncoding RNA interaction network in the regulatory elements of target genes by chromatin in situ reverse transcription sequencing. Genome Research
Ma W, Ay F, Lee C, et al. (2018) Using DNase Hi-C techniques to map global and local three-dimensional genome architecture at high resolution. Methods (San Diego, Calif.)
Fotuhi Siahpirani A, Ay F, Roy S. (2016) A multi-task graph-clustering approach for chromosome conformation capture data sets identifies conserved modules of chromosomal interactions. Genome Biology. 17: 114
Roy S, Siahpirani AF, Chasman D, et al. (2015) A predictive modeling approach for cell line-specific long-range regulatory interactions. Nucleic Acids Research
Roy S, Siahpirani AF, Chasman D, et al. (2015) A predictive modeling approach for cell line-specific long-range regulatory interactions. Nucleic Acids Research
Ay F, Noble WS. (2015) Analysis methods for studying the 3D architecture of the genome. Genome Biology. 16: 183
Gittelman RM, Hun E, Ay F, et al. (2015) Comprehensive identification and analysis of human accelerated regulatory DNA. Genome Research
Dileep V, Ay F, Sima J, et al. (2015) Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program. Genome Research
Varoquaux N, Liachko I, Ay F, et al. (2015) Accurate identification of centromere locations in yeast genomes using Hi-C. Nucleic Acids Research. 43: 5331-9
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