Ferhat Ay, Ph.D.

Affiliations: 
2011 University of Florida, Gainesville, Gainesville, FL, United States 
Area:
Computer Engineering, Computer Science, Bioinformatics Biology
Google:
"Ferhat Ay"

Parents

Sign in to add mentor
Manolis Kellis grad student MIT (Computational Biology Tree)
Tamer Kahveci grad student 2011 University of Florida
 (A comparative study on biological networks: Alignment and structural properties.)
BETA: Related publications

Publications

You can help our author matching system! If you notice any publications incorrectly attributed to this author, please sign in and mark matches as correct or incorrect.

Rivera-Mulia JC, Kim S, Gabr H, et al. (2019) Replication timing networks reveal a link between transcription regulatory circuits and replication timing control. Genome Research
Fotuhi Siahpirani A, Ay F, Roy S. (2016) A multi-task graph-clustering approach for chromosome conformation capture data sets identifies conserved modules of chromosomal interactions. Genome Biology. 17: 114
Roy S, Siahpirani AF, Chasman D, et al. (2015) A predictive modeling approach for cell line-specific long-range regulatory interactions. Nucleic Acids Research
Roy S, Siahpirani AF, Chasman D, et al. (2015) A predictive modeling approach for cell line-specific long-range regulatory interactions. Nucleic Acids Research
Ay F, Noble WS. (2015) Analysis methods for studying the 3D architecture of the genome. Genome Biology. 16: 183
Gittelman RM, Hun E, Ay F, et al. (2015) Comprehensive identification and analysis of human accelerated regulatory DNA. Genome Research
Dileep V, Ay F, Sima J, et al. (2015) Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program. Genome Research
Varoquaux N, Liachko I, Ay F, et al. (2015) Accurate identification of centromere locations in yeast genomes using Hi-C. Nucleic Acids Research. 43: 5331-9
Ay F, Vu TH, Zeitz MJ, et al. (2015) Identifying multi-locus chromatin contacts in human cells using tethered multiple 3C. Bmc Genomics. 16: 121
Libbrecht MW, Ay F, Hoffman MM, et al. (2015) Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression. Genome Research. 25: 544-57
See more...