☰ Chemistry Tree

Erik Winfree, PhD

Affiliations:	1999-1999	Molecular Biology	Princeton University, Princeton, NJ
	2000-	Computer Science	California Institute of Technology, Pasadena, CA
	2000-2000	CSAIL	Massachusetts Institute of Technology, Cambridge, MA, United States

Area:

biomolecular computation

Website:

http://www.dna.caltech.edu/~winfree/

Google:

Bio:

http://resolver.caltech.edu/CaltechETD:etd-05192003-110022

Mean distance: 9.98

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Parents

John J. Hopfield	grad student	1998	Caltech (Neurotree)
(Algorithmic self-assembly of DNA)
Stanislas Leibler	post-doc		Princeton

Children

Jongmin Kim	grad student	2000-2007	Caltech
Rebecca Schulman	grad student	2001-2007	Caltech
David Soloveichik	grad student	2002-2008	Caltech
David Yu Zhang	grad student	2005-2010	Rice University
Rizal F. Hariadi	grad student	2003-2011	Caltech
Elisa Franco	grad student	2006-2012	Caltech
Joseph M. Schaeffer	grad student	2004-2013	Caltech
Constantine G. Evans	grad student	2008-2014	Caltech
Niranjan Srinivas	grad student	2010-2015	Caltech
Robert F. Johnson	grad student	2014-2020	Caltech
Paul W. K. Rothemund	post-doc	2001-2008	Caltech (BME Tree)
Georg Seelig	post-doc	2003-2009	University of Washington
Peng Yin	post-doc	2005-2009	Caltech
Lulu Qian	post-doc	2008-2010	Caltech
David S. Doty	post-doc	2010-2015	(MathTree)
Damien Woods	post-doc	2009-2016	(Computer Science Tree)

Collaborators

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Publications

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Evans CG, O'Brien J, Winfree E, et al. (2024) Pattern recognition in the nucleation kinetics of non-equilibrium self-assembly. Nature. 625: 500-507
Badelt S, Grun C, Sarma KV, et al. (2020) A domain-level DNA strand displacement reaction enumerator allowing arbitrary non-pseudoknotted secondary structures. Journal of the Royal Society, Interface. 17: 20190866
Clamons S, Qian L, Winfree E. (2020) Programming and simulating chemical reaction networks on a surface. Journal of the Royal Society, Interface. 17: 20190790
Johnson RF, Winfree E. (2020) Verifying polymer reaction networks using bisimulation Theoretical Computer Science
Woods D, Doty D, Myhrvold C, et al. (2019) Author Correction: Diverse and robust molecular algorithms using reprogrammable DNA self-assembly. Nature
Woods D, Doty D, Myhrvold C, et al. (2019) Diverse and robust molecular algorithms using reprogrammable DNA self-assembly. Nature. 567: 366-372
Berleant J, Berlind C, Badelt S, et al. (2018) Automated sequence-level analysis of kinetics and thermodynamics for domain-level DNA strand-displacement systems. Journal of the Royal Society, Interface. 15: 20180107
Wang B, Thachuk C, Ellington AD, et al. (2018) Effective design principles for leakless strand displacement systems. Proceedings of the National Academy of Sciences of the United States of America. 115: E12182-E12191
Johnson RF, Dong Q, Winfree E. (2018) Verifying chemical reaction network implementations: A bisimulation approach Theoretical Computer Science. 765: 3-46
Srinivas N, Parkin J, Seelig G, et al. (2017) Enzyme-free nucleic acid dynamical systems. Science (New York, N.Y.). 358

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