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Krishna M. Roskin, Ph.D. - Publications

Affiliations: 
University of California, Santa Cruz, Santa Cruz, CA, United States 
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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Muñoz-González JI, Jara-Acevedo M, Alvarez-Twose I, Merker JD, Teodosio C, Hou Y, Henriques A, Roskin KM, Sanchez-Muñoz L, Tsai AG, Caldas C, Matito A, Sánchez-Gallego JI, Mayado A, Dasilva-Freire N, et al. Impact of somatic and germline mutations on the outcome of systemic mastocytosis. Blood Advances. 2: 2814-2828. PMID 30373888 DOI: 10.1182/Bloodadvances.2018020628  0.344
2018 Pineda S, Sigdel TK, Liberto J, Roskin K, Boyd S, Sirota M, Sarwal MM. B Cell Immune Repertoire Sequencing Identifies Pre-transplant Rejection Risk Transplantation. 102: S36. DOI: 10.1097/01.Tp.0000542591.08680.F3  0.301
2015 Wang C, Liu Y, Roskin KM, Jackson KJ, Boyd SD. Laboratory and Data Analysis Methods for Characterization of Human B Cell Repertoires by High-Throughput DNA Sequencing. Methods in Molecular Biology (Clifton, N.J.). 1343: 219-33. PMID 26420720 DOI: 10.1007/978-1-4939-2963-4_17  0.349
2015 Collins AM, Wang Y, Roskin KM, Marquis CP, Jackson KJ. The mouse antibody heavy chain repertoire is germline-focused and highly variable between inbred strains. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370. PMID 26194750 DOI: 10.1098/Rstb.2014.0236  0.384
2015 Wang C, Liu Y, Cavanagh MM, Le Saux S, Qi Q, Roskin KM, Looney TJ, Lee JY, Dixit V, Dekker CL, Swan GE, Goronzy JJ, Boyd SD. B-cell repertoire responses to varicella-zoster vaccination in human identical twins. Proceedings of the National Academy of Sciences of the United States of America. 112: 500-5. PMID 25535378 DOI: 10.1073/Pnas.1415875112  0.328
2013 Merker JD, Roskin KM, Ng D, Pan C, Fisk DG, King JJ, Hoh R, Stadler M, Okumoto LM, Abidi P, Hewitt R, Jones CD, Gojenola L, Clark MJ, Zhang B, et al. Comprehensive whole-genome sequencing of an early-stage primary myelofibrosis patient defines low mutational burden and non-recurrent candidate genes. Haematologica. 98: 1689-96. PMID 23872309 DOI: 10.3324/Haematol.2013.092379  0.488
2013 Parameswaran P, Liu Y, Roskin KM, Jackson KKL, Dixit VP, Lee JY, Artiles KL, Zompi S, Vargas MJ, Simen BB, Hanczaruk B, McGowan KR, Tariq MA, Pourmand N, Koller D, et al. Convergent antibody signatures in human dengue Cell Host and Microbe. 13: 691-700. PMID 23768493 DOI: 10.1016/J.Chom.2013.05.008  0.353
2012 Merker JD, Roskin K, Ng D, Pan C, Fisk DG, Jones CD, Gojenola L, Clark MJ, Zhang B, Cherry M, Snyder M, Boyd SD, Zehnder JL, Fire AZ, Gotlib J. Whole Genome Sequence Analysis of Primary Myelofibrosis. Blood. 120: 2863-2863. DOI: 10.1182/Blood.V120.21.2863.2863  0.473
2011 Roskin KM, Paten B, Haussler D. Meta-Alignment with Crumble and Prune: Partitioning very large alignment problems for performance and parallelization Bmc Bioinformatics. 12. PMID 21569267 DOI: 10.1186/1471-2105-12-144  0.516
2011 Raney BJ, Cline MS, Rosenbloom KR, Dreszer TR, Learned K, Barber GP, Meyer LR, Sloan CA, Malladi VS, Roskin KM, Suh BB, Hinrichs AS, Clawson H, Zweig AS, Kirkup V, et al. ENCODE whole-genome data in the UCSC genome browser (2011 update). Nucleic Acids Research. 39: D871-5. PMID 21037257 DOI: 10.1093/Nar/Gkq1017  0.794
2004 Roskin KM, Diekhans M, Haussler D. Score functions for determining regional conservation in two-species local alignments. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 11: 395-411. PMID 15285898 DOI: 10.1089/1066527041410328  0.69
2004 Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, Roskin KM, Baertsch R, Rosenbloom K, Clawson H, Green ED, Haussler D, Miller W. Aligning multiple genomic sequences with the threaded blockset aligner. Genome Research. 14: 708-15. PMID 15060014 DOI: 10.1101/Gr.1933104  0.811
2004 Jensen-Seaman MI, Furey TS, Payseur BA, Lu Y, Roskin KM, Chen CF, Thomas MA, Haussler D, Jacob HJ. Comparative recombination rates in the rat, mouse, and human genomes. Genome Research. 14: 528-38. PMID 15059993 DOI: 10.1101/Gr.1970304  0.746
2004 Yang S, Smit AF, Schwartz S, Chiaromonte F, Roskin KM, Haussler D, Miller W, Hardison RC. Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes. Genome Research. 14: 517-27. PMID 15059992 DOI: 10.1101/Gr.1984404  0.645
2004 Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer S, Scott G, Steffen D, Worley KC, Burch PE, Okwuonu G, Hines S, Lewis L, DeRamo C, Delgado O, ... ... Roskin KM, et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 428: 493-521. PMID 15057822 DOI: 10.1038/Nature02426  0.83
2004 Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, Haussler D, Kent WJ. The UCSC Table Browser data retrieval tool. Nucleic Acids Research. 32: D493-6. PMID 14681465 DOI: 10.1093/Nar/Gkh103  0.79
2003 Hardison RC, Chiaromonte F, Kolbe D, Wang H, Petrykowska H, Elnitski L, Yang S, Giardine B, Zhang Y, Riemer C, Schwartz S, Haussler D, Roskin KM, Weber RJ, Diekhans M, et al. Global predictions and tests of erythroid regulatory regions. Cold Spring Harbor Symposia On Quantitative Biology. 68: 335-44. PMID 15338635 DOI: 10.1101/Sqb.2003.68.335  0.436
2003 Chiaromonte F, Weber RJ, Roskin KM, Diekhans M, Kent WJ, Haussler D. The share of human genomic DNA under selection estimated from human-mouse genomic alignments. Cold Spring Harbor Symposia On Quantitative Biology. 68: 245-54. PMID 15338624  0.509
2003 Hardison RC, Roskin KM, Yang S, Diekhans M, Kent WJ, Weber R, Elnitski L, Li J, O'Connor M, Kolbe D, Schwartz S, Furey TS, Whelan S, Goldman N, Smit A, et al. Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. Genome Research. 13: 13-26. PMID 12529302 DOI: 10.1101/Gr.844103  0.781
2003 Karolchik D, Baertsch R, Diekhans M, Furey TS, Hinrichs A, Lu YT, Roskin KM, Schwartz M, Sugnet CW, Thomas DJ, Weber RJ, Haussler D, Kent WJ. The UCSC Genome Browser Database. Nucleic Acids Research. 31: 51-4. PMID 12519945 DOI: 10.1093/Nar/Gkg129  0.766
2002 Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, ... ... Roskin KM, et al. Initial sequencing and comparative analysis of the mouse genome. Nature. 420: 520-62. PMID 12466850 DOI: 10.1038/Nature01262  0.741
2002 Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, Zahler AM, Haussler D. The human genome browser at UCSC. Genome Research. 12: 996-1006. PMID 12045153 DOI: 10.1101/Gr.229102  0.804
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