| Year |
Citation |
Score |
| 2019 |
Guerrero FD, Bendele KG, Ghaffari N, Guhlin J, Gedye KR, Lawrence KE, Dearden PK, Harrop TWR, Heath ACG, Lun Y, Metz RP, Teel P, Perez de Leon A, Biggs PJ, Pomroy WE, et al. The Pacific Biosciences assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, Neumann, 1901. Data in Brief. 27: 104602. PMID 31656838 DOI: 10.1016/J.Dib.2019.104602 |
0.328 |
|
| 2018 |
Ghaffari N, Arshad OA, Jeong H, Thiltges J, Criscitiello MF, Yoon BJ, Datta A, Johnson CD. Examining De Novo Transcriptome Assemblies via a Quality Assessment Pipeline. Ieee/Acm Transactions On Computational Biology and Bioinformatics. 15: 494-505. PMID 29610098 DOI: 10.1109/Tcbb.2015.2446478 |
0.303 |
|
| 2017 |
Abante J, Ghaffari N, Johnson CD, Datta A. HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment. Bmc Genomics. 18: 694. PMID 28874136 DOI: 10.1186/S12864-017-3965-2 |
0.316 |
|
| 2017 |
Chen CC, Ghaffari N, Qian X, Yoon BJ. Optimal hybrid sequencing and assembly: Feasibility conditions for accurate genome reconstruction and cost minimization strategy. Computational Biology and Chemistry. PMID 28528020 DOI: 10.1016/J.Compbiolchem.2017.03.016 |
0.32 |
|
| 2014 |
Ghaffari N, Sanchez-Flores A, Doan R, Garcia-Orozco KD, Chen PL, Ochoa-Leyva A, Lopez-Zavala AA, Carrasco JS, Hong C, Brieba LG, Rudiño-Piñera E, Blood PD, Sawyer JE, Johnson CD, Dindot SV, et al. Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture. Scientific Reports. 4: 7081. PMID 25420880 DOI: 10.1038/Srep07081 |
0.333 |
|
| 2013 |
Ghaffari N, Yousefi MR, Johnson CD, Ivanov I, Dougherty ER. Modeling the next generation sequencing sample processing pipeline for the purposes of classification. Bmc Bioinformatics. 14: 307. PMID 24118904 DOI: 10.1186/1471-2105-14-307 |
0.473 |
|
| 2011 |
Ghaffari N, Ivanov I, Qian X, Dougherty ER. A CoD-based stationary control policy for intervening in large gene regulatory networks. Bmc Bioinformatics. 12: S10. PMID 22165980 DOI: 10.1186/1471-2105-12-S10-S10 |
0.569 |
|
| 2011 |
Wang Y, Ghaffari N, Johnson CD, Braga-Neto UM, Wang H, Chen R, Zhou H. Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens. Bmc Bioinformatics. 12: S5. PMID 22165852 DOI: 10.1186/1471-2105-12-S10-S5 |
0.333 |
|
| 2010 |
Qian X, Ghaffari N, Ivanov I, Dougherty ER. State reduction for network intervention in probabilistic Boolean networks. Bioinformatics (Oxford, England). 26: 3098-104. PMID 20956246 DOI: 10.1093/Bioinformatics/Btq575 |
0.557 |
|
| 2010 |
Ghaffari N, Ivanov I, Qian X, Dougherty ER. A CoD-based reduction algorithm for designing stationary control policies on Boolean networks. Bioinformatics (Oxford, England). 26: 1556-63. PMID 20421196 DOI: 10.1093/Bioinformatics/Btq225 |
0.569 |
|
| 2010 |
Ivanov I, Simeonov P, Ghaffari N, Qian X, Dougherty ER. Selection policy-induced reduction mappings for Boolean networks Ieee Transactions On Signal Processing. 58: 4871-4882. DOI: 10.1109/Tsp.2010.2050314 |
0.522 |
|
| 2009 |
Qian X, Ivanov I, Ghaffari N, Dougherty ER. Intervention in gene regulatory networks via greedy control policies based on long-run behavior. Bmc Systems Biology. 3: 61. PMID 19527511 DOI: 10.1186/1752-0509-3-61 |
0.555 |
|
| 2009 |
Ghaffari N, Ivanov I, Dougherty E. A cod based reduction algorithm for boolean and probabilistic boolean networks 2009 Ieee International Workshop On Genomic Signal Processing and Statistics, Gensips 2009. DOI: 10.1109/GENSIPS.2009.5174350 |
0.442 |
|
| 2008 |
Harris C, Ghaffari N. Biomarker discovery across annotated and unannotated microarray datasets using semi-supervised learning. Bmc Genomics. 9: S7. PMID 18831798 DOI: 10.1186/1471-2164-9-S2-S7 |
0.323 |
|
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