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Serguei V. Pakhomov, Ph.D. - Publications

Affiliations: 
2001 University of Minnesota, Twin Cities, Minneapolis, MN 
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Cohen T, Xu W, Guo Y, Pakhomov S, Leroy G. Coherence and comprehensibility: Large language models predict lay understanding of health-related content. Journal of Biomedical Informatics. 161: 104758. PMID 39662650 DOI: 10.1016/j.jbi.2024.104758  0.317
2024 Li C, Xu W, Cohen T, Pakhomov S. Useful blunders: Can automated speech recognition errors improve downstream dementia classification? Journal of Biomedical Informatics. 150: 104598. PMID 38253228 DOI: 10.1016/j.jbi.2024.104598  0.372
2024 Pakhomov S, Solinsky J, Michalowski M, Bachanova V. A Conversational Agent for Early Detection of Neurotoxic Effects of Medications through Automated Intensive Observation. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 29: 24-38. PMID 38160267  0.314
2023 Li C, Solinsky J, Cohen T, Pakhomov S. A curious case of retrogenesis in language: Automated analysis of language patterns observed in dementia patients and young children. Neuroscience Informatics. 4. PMID 38433986 DOI: 10.1016/j.neuri.2023.100155  0.4
2021 Li J, Zhou Y, Jiang X, Natarajan K, Pakhomov SV, Liu H, Xu H. Are synthetic clinical notes useful for real natural language processing tasks: A case study on clinical entity recognition. Journal of the American Medical Informatics Association : Jamia. PMID 34272955 DOI: 10.1093/jamia/ocab112  0.33
2020 Dong X, Li J, Soysal E, Bian J, DuVall SL, Hanchrow E, Liu H, Lynch KE, Matheny M, Natarajan K, Ohno-Machado L, Pakhomov S, Reeves RM, Sitapati AM, Abhyankar S, et al. COVID-19 TestNorm - A tool to normalize COVID-19 testing names to LOINC codes. Journal of the American Medical Informatics Association : Jamia. PMID 32569358 DOI: 10.1093/Jamia/Ocaa145  0.32
2020 Tignanelli CJ, Silverman GM, Lindemann EA, Trembley AL, Gipson JL, Beilman G, Lyng JW, Finzel R, McEwan R, Knoll BC, Pakhomov S, Melton GB. Natural Language Processing of Prehospital Emergency Medical Services Trauma Records Allows for Automated Characterization of Treatment Appropriateness. The Journal of Trauma and Acute Care Surgery. PMID 31977990 DOI: 10.1097/Ta.0000000000002598  0.401
2019 Sadat MN, Aziz MMA, Mohammed N, Pakhomov S, Liu H, Jiang X. A privacy-preserving distributed filtering framework for NLP artifacts. Bmc Medical Informatics and Decision Making. 19: 183. PMID 31493797 DOI: 10.1186/S12911-019-0867-Z  0.317
2019 Silverman GM, Lindemann EA, Rajamani G, Finzel RL, McEwan R, Knoll BC, Pakhomov S, Melton GB, Tignanelli CJ. Named Entity Recognition in Prehospital Trauma Care. Studies in Health Technology and Informatics. 264: 1586-1587. PMID 31438244 DOI: 10.3233/Shti190547  0.41
2017 Soysal E, Wang J, Jiang M, Wu Y, Pakhomov S, Liu H, Xu H. CLAMP - a toolkit for efficiently building customized clinical natural language processing pipelines. Journal of the American Medical Informatics Association : Jamia. PMID 29186491 DOI: 10.1093/Jamia/Ocx132  0.403
2017 Hultman GM, McEwan R, Pakhomov S, Lindemann E, Skube SJ, Melton GB. Usability Evaluation of NLP-PIER: A Clinical Document Search Engine for Researchers. Studies in Health Technology and Informatics. 245: 1269-1269. DOI: 10.3233/978-1-61499-830-3-1269  0.399
2015 Pakhomov SV, Marino SE, Banks S, Bernick C. Using Automatic Speech Recognition to Assess Spoken Responses to Cognitive Tests of Semantic Verbal Fluency. Speech Communication. 75: 14-26. PMID 26622073 DOI: 10.1016/j.specom.2015.09.010  0.354
2015 Zheng K, Vydiswaran VG, Liu Y, Wang Y, Stubbs A, Uzuner O, Gururaj AE, Bayer S, Aberdeen J, Rumshisky A, Pakhomov S, Liu H, Xu H. Ease of adoption of clinical natural language processing software: An evaluation of five systems. Journal of Biomedical Informatics. PMID 26210361 DOI: 10.1016/J.Jbi.2015.07.008  0.381
2015 Wang Y, Pakhomov S, Ryan JO, Melton GB. Domain adaption of parsing for operative notes. Journal of Biomedical Informatics. 54: 1-9. PMID 25661593 DOI: 10.1016/J.Jbi.2015.01.016  0.421
2015 Pakhomov SV, Jones DT, Knopman DS. Language networks associated with computerized semantic indices. Neuroimage. 104: 125-37. PMID 25315785 DOI: 10.1016/J.Neuroimage.2014.10.008  0.305
2014 Moon S, Pakhomov S, Liu N, Ryan JO, Melton GB. A sense inventory for clinical abbreviations and acronyms created using clinical notes and medical dictionary resources. Journal of the American Medical Informatics Association : Jamia. 21: 299-307. PMID 23813539 DOI: 10.1136/Amiajnl-2012-001506  0.549
2012 Farri O, Rahman A, Monsen KA, Zhang R, Pakhomov SV, Pieczkiewicz DS, Speedie SM, Melton GB. Impact of a prototype visualization tool for new information in EHR clinical documents. Applied Clinical Informatics. 3: 404-18. PMID 23646087 DOI: 10.4338/Aci-2012-05-Ra-0017  0.31
2012 Moon S, Pakhomov S, Melton GB. Automated disambiguation of acronyms and abbreviations in clinical texts: window and training size considerations. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2012: 1310-9. PMID 23304410  0.526
2012 Pakhomov SV, Hemmy LS, Lim KO. Automated semantic indices related to cognitive function and rate of cognitive decline. Neuropsychologia. 50: 2165-75. PMID 22659109 DOI: 10.1016/j.neuropsychologia.2012.05.016  0.349
2012 Marino SE, Pakhomov SV, Han S, Anderson KL, Ding M, Eberly LE, Loring DW, Hawkins-Taylor C, Rarick JO, Leppik IE, Cibula JE, Birnbaum AK. The effect of topiramate plasma concentration on linguistic behavior, verbal recall and working memory. Epilepsy & Behavior : E&B. 24: 365-72. PMID 22658432 DOI: 10.1016/J.Yebeh.2012.04.120  0.401
2012 Pakhomov S, Hemmy L, Kuskowski M, Roberts R, Petersen R, Boeve B, Knopman D. Automated index of semantic verbal fluency in mild cognitive impairment and Alzheimer's disease Alzheimers & Dementia. 8: 555. DOI: 10.1016/J.Jalz.2012.05.1494  0.41
2012 Hemmy L, Lim K, Pakhomov S. Automated semantic indices are related to functional brain networks in MCI and Alzheimer's disease Alzheimers & Dementia. 8: 548. DOI: 10.1016/J.Jalz.2012.05.1474  0.4
2011 Moon S, Pakhomov S, Ryan J, Melton GB. Automated non-alphanumeric symbol resolution in clinical texts. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2011: 979-86. PMID 22195157  0.586
2011 Pakhomov S, Chacon D, Wicklund M, Gundel J. Computerized assessment of syntactic complexity in Alzheimer's disease: a case study of Iris Murdoch's writing. Behavior Research Methods. 43: 136-44. PMID 21287110 DOI: 10.3758/S13428-010-0037-9  0.379
2010 Pakhomov SV, Smith GE, Marino S, Birnbaum A, Graff-Radford N, Caselli R, Boeve B, Knopman DS. A computerized technique to assess language use patterns in patients with frontotemporal dementia. Journal of Neurolinguistics. 23: 127-144. PMID 21359164 DOI: 10.1016/J.Jneuroling.2009.12.001  0.424
2010 Pakhomov S, McInnes B, Adam T, Liu Y, Pedersen T, Melton GB. Semantic Similarity and Relatedness between Clinical Terms: An Experimental Study. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2010: 572-6. PMID 21347043  0.32
2010 Pakhomov SV, Smith GE, Chacon D, Feliciano Y, Graff-Radford N, Caselli R, Knopman DS. Computerized analysis of speech and language to identify psycholinguistic correlates of frontotemporal lobar degeneration. Cognitive and Behavioral Neurology : Official Journal of the Society For Behavioral and Cognitive Neurology. 23: 165-77. PMID 20829666 DOI: 10.1097/Wnn.0B013E3181C5Dde3  0.46
2010 Pakhomov S, Marino S, Birnbaum A, Hawkins‐Taylor C, Leppik I. Measuring speech and language characteristics of effects of medications on cognition. Journal of the Acoustical Society of America. 127: 1997-1997. DOI: 10.1121/1.3385174  0.447
2009 McInnes BT, Pedersen T, Pakhomov SV. UMLS-Interface and UMLS-Similarity : open source software for measuring paths and semantic similarity. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2009: 431-5. PMID 20351894  0.318
2008 Pakhomov S, Bjornsen S, Hanson P, Smith S. Quality performance measurement using the text of electronic medical records. Medical Decision Making : An International Journal of the Society For Medical Decision Making. 28: 462-70. PMID 18480037 DOI: 10.1177/0272989X08315253  0.327
2005 Rindflesch TC, Pakhomov SV, Fiszman M, Kilicoglu H, Sanchez VR. Medical facts to support inferencing in natural language processing. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 634-8. PMID 16779117  0.431
2005 Coden AR, Pakhomov SV, Ando RK, Duffy PH, Chute CG. Domain-specific language models and lexicons for tagging. Journal of Biomedical Informatics. 38: 422-30. PMID 16337567 DOI: 10.1016/J.Jbi.2005.02.009  0.454
2005 Pakhomov SV, Buntrock J, Chute CG. Prospective recruitment of patients with congestive heart failure using an ad-hoc binary classifier. Journal of Biomedical Informatics. 38: 145-53. PMID 15797003 DOI: 10.1016/J.Jbi.2004.11.016  0.333
2003 Savova GK, Harris M, Johnson T, Pakhomov SV, Chute CG. A data-driven approach for extracting "the most specific term" for ontology development. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 579-83. PMID 14728239  0.559
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