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Euiyoung Bae, Ph.D. - Publications

Affiliations: 
2005 University of Wisconsin, Madison, Madison, WI 
 2009- Agricultural Biotechnology Seoul National University, Seoul, South Korea 
Area:
Biochemistry, X-ray diffraction, computational biology
Website:
https://sites.google.com/site/baesnu/people
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47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Kim J, Moon S, Romo TD, Yang Y, Bae E, Phillips GN. Conformational dynamics of adenylate kinase in crystals. Structural Dynamics (Melville, N.Y.). 11: 014702. PMID 38389978 DOI: 10.1063/4.0000205  0.448
2023 Oh H, Koo J, An SY, Hong SH, Suh JY, Bae E. Structural and functional investigation of GajB protein in Gabija anti-phage defense. Nucleic Acids Research. PMID 37897358 DOI: 10.1093/nar/gkad951  0.308
2020 Kim I, Koo J, An SY, Hong S, Ka D, Kim EH, Bae E, Suh JY. Structural and mechanistic insights into the CRISPR inhibition of AcrIF7. Nucleic Acids Research. PMID 32810226 DOI: 10.1093/Nar/Gkaa690  0.364
2020 An SY, Ka D, Kim I, Kim EH, Kim NK, Bae E, Suh JY. Intrinsic disorder is essential for Cas9 inhibition of anti-CRISPR AcrIIA5. Nucleic Acids Research. PMID 32544231 DOI: 10.1093/Nar/Gkaa512  0.343
2020 Ka D, Oh H, Park E, Kim JH, Bae E. Structural and functional evidence of bacterial antiphage protection by Thoeris defense system via NAD degradation. Nature Communications. 11: 2816. PMID 32499527 DOI: 10.1038/S41467-020-16703-W  0.395
2020 Ka D, Suh N, Bae E. Crystal Structure of an Anti-CRISPR Protein, AcrIF2, and its Interaction With Type I-F Cas Proteins Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.395  0.413
2019 Moon S, Kim J, Koo J, Bae E. Structural and mutational analyses of psychrophilic and mesophilic adenylate kinases highlight the role of hydrophobic interactions in protein thermal stability. Structural Dynamics (Melville, N.Y.). 6: 024702. PMID 31111079 DOI: 10.1063/1.5089707  0.514
2019 Moon S, Kim J, Koo J, Bae E. Structural and mutational investigation of psychrophilic adenylate kinase reveals the importance of hydrophobic packing in protein thermal stability Acta Crystallographica Section A. 75. DOI: 10.1107/S2053273319094257  0.501
2019 Ka D, Jung S, Bae E. Crystal structures of Streptococcus pyogenes Cas1 and Cas2 in the type II-A CRISPR-Cas system Acta Crystallographica Section A. 75. DOI: 10.1107/S2053273319094063  0.339
2018 Ka D, Jang DM, Han BW, Bae E. Molecular organization of the type II-A CRISPR adaptation module and its interaction with Cas9 via Csn2. Nucleic Acids Research. PMID 30102386 DOI: 10.1093/Nar/Gky702  0.539
2018 Olmos JL, Pandey S, Martin-Garcia JM, Calvey G, Katz A, Knoska J, Kupitz C, Hunter MS, Liang M, Oberthuer D, Yefanov O, Wiedorn M, Heyman M, Holl M, Pande K, ... ... Bae E, et al. Enzyme intermediates captured "on the fly" by mix-and-inject serial crystallography. Bmc Biology. 16: 59. PMID 29848358 DOI: 10.1186/S12915-018-0524-5  0.389
2018 Kim I, Jeong M, Ka D, Han M, Kim NK, Bae E, Suh JY. Solution structure and dynamics of anti-CRISPR AcrIIA4, the Cas9 inhibitor. Scientific Reports. 8: 3883. PMID 29497118 DOI: 10.1038/S41598-018-22177-0  0.341
2018 Jeong M, Kim I, Kim G, Ka D, Kim NK, Bae E, Ryu KS, Suh JY. Solution structure and dynamics of Xanthomonas albilineans Cas2 provide mechanistic insight on nuclease activity. Febs Letters. 592: 655. PMID 29485698 DOI: 10.1002/1873-3468.12997  0.402
2018 Hong S, Ka D, Yoon SJ, Suh N, Jeong M, Suh JY, Bae E. CRISPR RNA and anti-CRISPR protein binding to the Xanthomonas albilineans Csy1-Csy2 heterodimer in the type I-F CRISPR-Cas system. The Journal of Biological Chemistry. PMID 29348170 DOI: 10.1074/Jbc.Ra117.001611  0.407
2018 Bae E, Suh N. Structure, Function, and Dynamics of Xanthomonas albilineans Cas2 in Type I-C CRISPR-Cas System Biophysical Journal. 114: 407a. DOI: 10.1016/J.Bpj.2017.11.2253  0.315
2017 Ka D, An SY, Suh JY, Bae E. Crystal structure of an anti-CRISPR protein, AcrIIA1. Nucleic Acids Research. PMID 29182776 DOI: 10.1093/Nar/Gkx1181  0.456
2017 Moon S, Kim J, Bae E. Structural analyses of adenylate kinases from Antarctic and tropical fishes for understanding cold adaptation of enzymes. Scientific Reports. 7: 16027. PMID 29167503 DOI: 10.1038/S41598-017-16266-9  0.436
2017 Ka D, Hong S, Jeong U, Jeong M, Suh N, Suh JY, Bae E. Structural and dynamic insights into the role of conformational switching in the nuclease activity of the Xanthomonas albilineans Cas2 in CRISPR-mediated adaptive immunity. Structural Dynamics (Melville, N.Y.). 4: 054701. PMID 28612041 DOI: 10.1063/1.4984052  0.437
2016 Ka D, Bae E. Structure and Interaction of Type II Cas1 from Sterptococcus Pyogenes Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.2879  0.414
2016 Moon S, Bae E. Structural Basis for Increased Thermal Stability of Local Structural Entropy-Optimized Adenylate Kinase Variants Biophysical Journal. 110: 391a. DOI: 10.1016/J.Bpj.2015.11.2113  0.547
2015 Park SH, Kim HS, Park MS, Moon S, Song MK, Park HS, Hahn H, Kim SJ, Bae E, Kim HJ, Han BW. Structure and Stability of the Dimeric Triosephosphate Isomerase from the Thermophilic Archaeon Thermoplasma acidophilum. Plos One. 10: e0145331. PMID 26709515 DOI: 10.1371/Journal.Pone.0145331  0.635
2015 Ka D, Lee H, Jung YD, Kim K, Seok C, Suh N, Bae E. Crystal Structure of Streptococcus pyogenes Cas1 and Its Interaction with Csn2 in the Type II CRISPR-Cas System. Structure (London, England : 1993). PMID 26671707 DOI: 10.1016/J.Str.2015.10.019  0.395
2015 Ka D, Bae E. Crystal Structures of Streptococcus Pyogenes and Xanthomonas Oryzae Cas5d Proteins Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.299  0.467
2015 Moon S, Bae E. Thermal Stabilization of Adenylate Kinases by Optimizing Local Structural Entropy Biophysical Journal. 108: 521a. DOI: 10.1016/J.Bpj.2014.11.2858  0.57
2015 Bae E, Moon S, Phillips GN. Molecular dynamics simulation of a psychrophilic adenylate kinase Journal of the Korean Society For Applied Biological Chemistry. 58: 209-212. DOI: 10.1007/S13765-015-0033-Y  0.452
2014 Ka D, Kim D, Baek G, Bae E. Structural and functional characterization of Streptococcus pyogenes Cas2 protein under different pH conditions. Biochemical and Biophysical Research Communications. 451: 152-7. PMID 25079131 DOI: 10.1016/J.Bbrc.2014.07.087  0.434
2014 Moon S, Bannen RM, Rutkoski TJ, Phillips GN, Bae E. Effectiveness and limitations of local structural entropy optimization in the thermal stabilization of mesophilic and thermophilic adenylate kinases. Proteins. 82: 2631-42. PMID 24931334 DOI: 10.1002/Prot.24627  0.753
2014 Moon S, Jung DK, Phillips GN, Bae E. An integrated approach for thermal stabilization of a mesophilic adenylate kinase. Proteins. 82: 1947-59. PMID 24615904 DOI: 10.1002/Prot.24549  0.581
2014 Moon S, Jung D, Phillips G, Bae E. Design and structure determination of thermally stable adenylate kinase variants Acta Crystallographica Section a Foundations and Advances. 70: C470-C470. DOI: 10.1107/S2053273314095291  0.589
2014 Moon S, Bae E. Crystal structures of thermally stable adenylate kinase mutants designed by local structural entropy optimization and structure-guided mutagenesis Journal of the Korean Society For Applied Biological Chemistry. 57: 661-665. DOI: 10.1007/S13765-014-4228-4  0.554
2013 Koo Y, Ka D, Kim EJ, Suh N, Bae E. Conservation and variability in the structure and function of the Cas5d endoribonuclease in the CRISPR-mediated microbial immune system. Journal of Molecular Biology. 425: 3799-810. PMID 23500492 DOI: 10.1016/J.Jmb.2013.02.032  0.418
2012 Koo Y, Jung DK, Bae E. Crystal structure of Streptococcus pyogenes Csn2 reveals calcium-dependent conformational changes in its tertiary and quaternary structure. Plos One. 7: e33401. PMID 22479393 DOI: 10.1371/Journal.Pone.0033401  0.438
2011 Bae E, Moon S, Jung D, Koo Y. Structural basis for increased thermal stability of adenylate kinase variants Acta Crystallographica Section A. 67: 780-780. DOI: 10.1107/S0108767311080251  0.46
2010 Bae E, Bitto E, Bingman CA, McCoy JG, Wesenberg GE, Phillips GN. Crystal structure of an eIF4G-like protein from Danio rerio. Proteins. 78: 1803-6. PMID 20229607 DOI: 10.1002/Prot.22703  0.701
2010 Bae E, Bitto E, Bingman CA, Allard ST, Wesenberg GE, Wrobel RL, Fox BG, Phillips GN. Crystal structure of a putative histidine-containing phosphotransfer protein from oryza sativa Journal of Applied Biological Chemistry. 53: 852-856. DOI: 10.3839/Jksabc.2010.130  0.558
2010 Bae E, Jung D, Phillips GN. A Comprehensive Approach To Protein Thermal Stabilization Biophysical Journal. 98. DOI: 10.1016/J.Bpj.2009.12.185  0.567
2008 Bae E, Bannen RM, Phillips GN. Bioinformatic method for protein thermal stabilization by structural entropy optimization. Proceedings of the National Academy of Sciences of the United States of America. 105: 9594-7. PMID 18621726 DOI: 10.1073/Pnas.0800938105  0.753
2008 Lee JE, Bae E, Bingman CA, Phillips GN, Raines RT. Structural basis for catalysis by onconase. Journal of Molecular Biology. 375: 165-77. PMID 18001769 DOI: 10.1016/J.Jmb.2007.09.089  0.468
2008 Bae E, Bingman CA, Aceti DJ, Phillips GN. Crystal structure of Homo sapiens protein LOC79017. Proteins. 70: 588-91. PMID 17932939 DOI: 10.1002/Prot.21719  0.562
2008 Bae E, Bingman CA, Bitto E, Aceti DJ, Phillips GN. Crystal structure of Arabidopsis thaliana cytokinin dehydrogenase. Proteins. 70: 303-6. PMID 17886275 DOI: 10.1002/Prot.21678  0.505
2007 Phillips GN, Fox BG, Markley JL, Volkman BF, Bae E, Bitto E, Bingman CA, Frederick RO, McCoy JG, Lytle BL, Pierce BS, Song J, Twigger SN. Structures of proteins of biomedical interest from the Center for Eukaryotic Structural Genomics. Journal of Structural and Functional Genomics. 8: 73-84. PMID 17786587 DOI: 10.1007/S10969-007-9023-6  0.692
2007 Bae E, Reiter NJ, Bingman CA, Kwan SS, Lee D, Phillips GN, Butcher SE, Brow DA. Structure and interactions of the first three RNA recognition motifs of splicing factor prp24. Journal of Molecular Biology. 367: 1447-58. PMID 17320109 DOI: 10.1016/J.Jmb.2007.01.078  0.423
2006 Bae E, Phillips GN. Roles of static and dynamic domains in stability and catalysis of adenylate kinase. Proceedings of the National Academy of Sciences of the United States of America. 103: 2132-7. PMID 16452168 DOI: 10.1073/Pnas.0507527103  0.519
2006 Berry MB, Bae E, Bilderback TR, Glaser M, Phillips GN. Crystal structure of ADP/AMP complex of Escherichia coli adenylate kinase. Proteins. 62: 555-6. PMID 16302237 DOI: 10.1002/Prot.20699  0.486
2005 Bae E, Phillips GN. Identifying and engineering ion pairs in adenylate kinases. Insights from molecular dynamics simulations of thermophilic and mesophilic homologues. The Journal of Biological Chemistry. 280: 30943-8. PMID 15995248 DOI: 10.1074/Jbc.M504216200  0.452
2004 Bae E, Phillips GN. Structures and analysis of highly homologous psychrophilic, mesophilic, and thermophilic adenylate kinases. The Journal of Biological Chemistry. 279: 28202-8. PMID 15100224 DOI: 10.1074/Jbc.M401865200  0.558
2003 Criswell AR, Bae E, Stec B, Konisky J, Phillips GN. Structures of thermophilic and mesophilic adenylate kinases from the genus Methanococcus. Journal of Molecular Biology. 330: 1087-99. PMID 12860130 DOI: 10.1016/S0022-2836(03)00655-7  0.736
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