☰

James Yorke - Publications

Affiliations: 
Physics University of Maryland, College Park, College Park, MD 
Website:
http://yorke.umd.edu/
Tree Info Similar researchers PubMed Report error

32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Zimin AV, Puiu D, Luo MC, Zhu T, Koren S, Marcais G, Yorke JA, Dvorak J, Salzberg SL. Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the mega-reads algorithm. Genome Research. PMID 28130360 DOI: 10.1101/Gr.213405.116  0.726
2016 Stevens KA, Wegrzyn J, Zimin A, Puiu D, Crepeau M, Cardeno C, Paul R, Gonzalez-Ibeaz D, Koriabine M, Holtz-Morris A, Martinez-Garcia P, Sezen U, Marcais G, Jermstad K, McGuire P, ... ... Yorke JA, et al. Sequence of the Sugar Pine Megagenome. Genetics. PMID 27794028 DOI: 10.1534/Genetics.116.193227  0.718
2015 Marçais G, Yorke JA, Zimin A. QuorUM: An Error Corrector for Illumina Reads. Plos One. 10: e0130821. PMID 26083032 DOI: 10.1371/Journal.Pone.0130821  0.709
2015 Joglekar M, Feudel U, Yorke JA. Geometry of the edge of chaos in a low-dimensional turbulent shear flow model. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 91: 052903. PMID 26066225 DOI: 10.1103/Physreve.91.052903  0.517
2015 Joglekar M, Yorke JA. Robustness of periodic orbits in the presence of noise Nonlinearity. 28: 697-711. DOI: 10.1088/0951-7715/28/3/697  0.518
2015 Joglekar M, Ott E, Yorke JA. Uncertainty as to whether or not a system has a chaotic attractor Nonlinearity. 28: 3803-3820. DOI: 10.1088/0951-7715/28/11/3803  0.527
2014 Zimin AV, Cornish AS, Maudhoo MD, Gibbs RM, Zhang X, Pandey S, Meehan DT, Wipfler K, Bosinger SE, Johnson ZP, Tharp GK, Marçais G, Roberts M, Ferguson B, Fox HS, ... ... Yorke JA, et al. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Biology Direct. 9: 20. PMID 25319552 DOI: 10.1186/1745-6150-9-20  0.739
2014 Joglekar M, Ott E, Yorke JA. Scaling of chaos versus periodicity: how certain is it that an attractor is chaotic? Physical Review Letters. 113: 084101. PMID 25192099 DOI: 10.1103/Physrevlett.113.084101  0.526
2014 Zimin A, Stevens KA, Crepeau MW, Holtz-Morris A, Koriabine M, Marçais G, Puiu D, Roberts M, Wegrzyn JL, de Jong PJ, Neale DB, Salzberg SL, Yorke JA, Langley CH. Sequencing and assembly of the 22-gb loblolly pine genome. Genetics. 196: 875-90. PMID 24653210 DOI: 10.1534/Genetics.113.159715  0.429
2014 Neale DB, Wegrzyn JL, Stevens KA, Zimin AV, Puiu D, Crepeau MW, Cardeno C, Koriabine M, Holtz-Morris AE, Liechty JD, Martínez-García PJ, Vasquez-Gross HA, Lin BY, Zieve JJ, Dougherty WM, ... ... Yorke JA, et al. Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies. Genome Biology. 15: R59. PMID 24647006 DOI: 10.1186/Gb-2014-15-3-R59  0.433
2013 Zimin AV, Marçais G, Puiu D, Roberts M, Salzberg SL, Yorke JA. The MaSuRCA genome assembler. Bioinformatics (Oxford, England). 29: 2669-77. PMID 23990416 DOI: 10.1093/Bioinformatics/Btt476  0.425
2012 Zimin AV, Kelley DR, Roberts M, Marçais G, Salzberg SL, Yorke JA. Mis-assembled "segmental duplications" in two versions of the Bos taurus genome. Plos One. 7: e42680. PMID 22880081 DOI: 10.1371/Journal.Pone.0042680  0.42
2012 Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M, Marçais G, Pop M, Yorke JA. GAGE: A critical evaluation of genome assemblies and assembly algorithms. Genome Research. 22: 557-67. PMID 22147368 DOI: 10.1101/Gr.131383.111  0.743
2010 Dalloul RA, Long JA, Zimin AV, Aslam L, Beal K, Blomberg Le Ann, Bouffard P, Burt DW, Crasta O, Crooijmans RP, Cooper K, Coulombe RA, De S, Delany ME, Dodgson JB, ... ... Yorke JA, et al. Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. Plos Biology. 8. PMID 20838655 DOI: 10.1371/Journal.Pbio.1000475  0.721
2010 Joglekar MR, Sander E, Yorke JA. Fixed points indices and period-doubling cascades Journal of Fixed Point Theory and Applications. 8: 151-176. DOI: 10.1007/S11784-010-0029-5  0.517
2009 Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marçais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL. A whole-genome assembly of the domestic cow, Bos taurus. Genome Biology. 10: R42. PMID 19393038 DOI: 10.1186/Gb-2009-10-4-R42  0.632
2009 Rapatski B, Yorke J. Modeling HIV outbreaks: the male to female prevalence ratio in the core population. Mathematical Biosciences and Engineering : Mbe. 6: 135-43. PMID 19292512 DOI: 10.3934/Mbe.2009.6.135  0.714
2008 Sindi SS, Hunt BR, Yorke JA. Duplication count distributions in DNA sequences. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 78: 061912. PMID 19256873 DOI: 10.1103/Physreve.78.061912  0.617
2008 Ott W, Yorke JA. When Lyapunov exponents fail to exist. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 78: 056203. PMID 19113196 DOI: 10.1103/Physreve.78.056203  0.584
2008 Roberts M, Zimin AV, Hayes W, Hunt BR, Ustun C, White JR, Havlak P, Yorke J. Improving Phrap-based assembly of the rat using "reliable" overlaps. Plos One. 3: e1836. PMID 18350171 DOI: 10.1371/Journal.Pone.0001836  0.495
2008 White JR, Roberts M, Yorke JA, Pop M. Figaro: a novel statistical method for vector sequence removal. Bioinformatics (Oxford, England). 24: 462-7. PMID 18202027 DOI: 10.1093/Bioinformatics/Btm632  0.379
2006 Rapatski BL, Suppe F, Yorke JA. Reconciling different infectivity estimates for HIV-1. Journal of Acquired Immune Deficiency Syndromes (1999). 43: 253-6. PMID 17003694 DOI: 10.1097/01.qai.0000243095.19405.5c  0.717
2006 Skufca JD, Yorke JA, Eckhardt B. Edge of chaos in a parallel shear flow. Physical Review Letters. 96: 174101. PMID 16712300 DOI: 10.1103/Physrevlett.96.174101  0.624
2006 Danforth CM, Yorke JA. Making forecasts for chaotic physical processes. Physical Review Letters. 96: 144102. PMID 16712079 DOI: 10.1103/Physrevlett.96.144102  0.545
2005 Rapatski BL, Suppe F, Yorke JA. HIV epidemics driven by late disease stage transmission. Journal of Acquired Immune Deficiency Syndromes (1999). 38: 241-53. PMID 15735440  0.719
2004 Roberts M, Hunt BR, Yorke JA, Bolanos RA, Delcher AL. A preprocessor for shotgun assembly of large genomes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 11: 734-52. PMID 15579242 DOI: 10.1089/Cmb.2004.11.734  0.436
2004 Roberts M, Hayes W, Hunt BR, Mount SM, Yorke JA. Reducing storage requirements for biological sequence comparison. Bioinformatics (Oxford, England). 20: 3363-9. PMID 15256412 DOI: 10.1093/Bioinformatics/Bth408  0.362
1969 Strauss A, Yorke JA. On the Fundamental Theory of Differential Equations Siam Review. 11: 236-246. DOI: 10.1137/1011037  0.694
1969 Strauss A, Yorke JA. Perturbing Uniformly Stable Linear Systems with and without Attraction Siam Journal On Applied Mathematics. 17: 725-738. DOI: 10.1137/0117066  0.703
1969 Strauss A, Yorke JA. Perturbing uniform asymptotically stable nonlinear systems Journal of Differential Equations. 6: 452-483. DOI: 10.1016/0022-0396(69)90004-7  0.703
1968 Strauss A, Yorke JA. Perturbing asymptotically stable differential equations Bulletin of the American Mathematical Society. 74: 992-997. DOI: 10.1090/S0002-9904-1968-12113-5  0.703
1967 Strauss A, Yorke JA. Perturbation theorems for ordinary differential equations Journal of Differential Equations. 3: 15-30. DOI: 10.1016/0022-0396(67)90003-4  0.69
Show low-probability matches.