Eleazar Eskin - Publications

Affiliations: 
Computer Science University of California, Los Angeles, Los Angeles, CA 
Area:
bioinformatics; computational biology; machine learning

214 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Lee C, Kang EY, Gandal MJ, Eskin E, Geschwind DH. Profiling allele-specific gene expression in brains from individuals with autism spectrum disorder reveals preferential minor allele usage. Nature Neuroscience. 22: 1521-1532. PMID 31455884 DOI: 10.1038/s41593-019-0461-9  0.6
2019 Rahmani E, Schweiger R, Rhead B, Criswell LA, Barcellos LF, Eskin E, Rosset S, Sankararaman S, Halperin E. Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology. Nature Communications. 10: 3417. PMID 31366909 DOI: 10.1038/s41467-019-11052-9  0.48
2019 Mangul S, Mosqueiro T, Abdill RJ, Duong D, Mitchell K, Sarwal V, Hill B, Brito J, Littman RJ, Statz B, Lam AK, Dayama G, Grieneisen L, Martin LS, Flint J, ... Eskin E, et al. Challenges and recommendations to improve the installability and archival stability of omics computational tools. Plos Biology. 17: e3000333. PMID 31220077 DOI: 10.1371/journal.pbio.3000333  0.6
2019 LaPierre N, Mangul S, Alser M, Mandric I, Wu NC, Koslicki D, Eskin E. MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples. Bmc Genomics. 20: 423. PMID 31167634 DOI: 10.1186/s12864-019-5699-9  0.32
2019 Mangul S, Martin LS, Hill BL, Lam AK, Distler MG, Zelikovsky A, Eskin E, Flint J. Systematic benchmarking of omics computational tools. Nature Communications. 10: 1393. PMID 30918265 DOI: 10.1038/s41467-019-09406-4  0.32
2019 Mangul S, Martin LS, Langmead B, Sanchez-Galan JE, Toma I, Hormozdiari F, Pevzner P, Eskin E. How bioinformatics and open data can boost basic science in countries and universities with limited resources. Nature Biotechnology. 37: 324-326. PMID 30833765 DOI: 10.1038/s41587-019-0053-y  0.76
2019 Mangul S, Martin LS, Eskin E, Blekhman R. Improving the usability and archival stability of bioinformatics software. Genome Biology. 20: 47. PMID 30813962 DOI: 10.1186/s13059-019-1649-8  0.32
2018 Sul JH, Martin LS, Eskin E. Population structure in genetic studies: Confounding factors and mixed models. Plos Genetics. 14: e1007309. PMID 30589851 DOI: 10.1371/journal.pgen.1007309  1
2018 Duong D, Ahmad WU, Eskin E, Chang KW, Li JJ. Word and Sentence Embedding Tools to Measure Semantic Similarity of Gene Ontology Terms by Their Definitions. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 30383443 DOI: 10.1089/cmb.2018.0093  0.6
2018 Wu Y, Hormozdiari F, Joo JWJ, Eskin E. Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 30272994 DOI: 10.1089/cmb.2018.0139  0.76
2018 Rahmani E, Schweiger R, Shenhav L, Wingert T, Hofer I, Gabel E, Eskin E, Halperin E. BayesCCE: a Bayesian framework for estimating cell-type composition from DNA methylation without the need for methylation reference. Genome Biology. 19: 141. PMID 30241486 DOI: 10.1186/s13059-018-1513-2  0.48
2018 Gamazon ER, Segrè AV, van de Bunt M, Wen X, Xi HS, Hormozdiari F, Ongen H, Konkashbaev A, Derks EM, Aguet F, Quan J, Nicolae DL, Eskin E, Kellis M, et al. Using an atlas of gene regulation across 44 human tissues to inform complex disease- and trait-associated variation. Nature Genetics. PMID 29955180 DOI: 10.1038/s41588-018-0154-4  0.76
2018 Gai L, Eskin E. Finding associated variants in genome-wide association studies on multiple traits. Bioinformatics (Oxford, England). 34: i467-i474. PMID 29949991 DOI: 10.1093/bioinformatics/bty249  0.6
2018 Hormozdiari F, Gazal S, van de Geijn B, Finucane HK, Ju CJ, Loh PR, Schoech A, Reshef Y, Liu X, O'Connor L, Gusev A, Eskin E, Price AL. Leveraging molecular quantitative trait loci to understand the genetic architecture of diseases and complex traits. Nature Genetics. PMID 29942083 DOI: 10.1038/s41588-018-0148-2  0.76
2018 Kang EY, Lee CH, Furlotte NA, Joo JWJ, Kostem E, Zaitlen N, Eskin E, Han B. An Association Mapping Framework To Account for Potential Sex Difference in Genetic Architectures. Genetics. PMID 29752291 DOI: 10.1534/genetics.117.300501  1
2018 Olde Loohuis LM, Mangul S, Ori APS, Jospin G, Koslicki D, Yang HT, Wu T, Boks MP, Lomen-Hoerth C, Wiedau-Pazos M, Cantor RM, de Vos WM, Kahn RS, Eskin E, Ophoff RA. Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia. Translational Psychiatry. 8: 96. PMID 29743478 DOI: 10.1038/s41398-018-0107-9  0.48
2018 Mangul S, Martin LS, Eskin E. Involving undergraduates in genomics research to narrow the education-research gap. Nature Biotechnology. 36: 369-371. PMID 29621227 DOI: 10.1038/nbt.4113  0.32
2018 Mangul S, Yang HT, Strauli N, Gruhl F, Porath HT, Hsieh K, Chen L, Daley T, Christenson S, Wesolowska-Andersen A, Spreafico R, Rios C, Eng C, Smith AD, Hernandez RD, ... ... Eskin E, et al. ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues. Genome Biology. 19: 36. PMID 29548336 DOI: 10.1186/s13059-018-1403-7  0.96
2017 Park DS, Eskin I, Kang EY, Gamazon ER, Eng C, Gignoux CR, Galanter JM, Burchard E, Ye CJ, Aschard H, Eskin E, Halperin E, Zaitlen N. An ancestry-based approach for detecting interactions. Genetic Epidemiology. PMID 29114909 DOI: 10.1002/gepi.22087  0.96
2017 Crawford NG, Kelly DE, Hansen MEB, Beltrame MH, Fan S, Bowman SL, Jewett E, Ranciaro A, Thompson S, Lo Y, Pfeifer SP, Jensen JD, Campbell MC, Beggs W, Hormozdiari F, ... ... Eskin E, et al. Loci associated with skin pigmentation identified in African populations. Science (New York, N.Y.). PMID 29025994 DOI: 10.1126/science.aan8433  0.76
2017 Duong D, Gai L, Snir S, Kang EY, Han B, Sul JH, Eskin E. Applying meta-analysis to genotype-tissue expression data from multiple tissues to identify eQTLs and increase the number of eGenes. Bioinformatics (Oxford, England). 33: i67-i74. PMID 28881962 DOI: 10.1093/bioinformatics/btx227  1
2017 Mangul S, Martin LS, Hoffmann A, Pellegrini M, Eskin E. Addressing the Digital Divide in Contemporary Biology: Lessons from Teaching UNIX. Trends in Biotechnology. PMID 28720283 DOI: 10.1016/j.tibtech.2017.06.007  0.32
2017 Hormozdiari F, Zhu A, Kichaev G, Ju CJ, Segrè AV, Joo JWJ, Won H, Sankararaman S, Pasaniuc B, Shifman S, Eskin E. Widespread Allelic Heterogeneity in Complex Traits. American Journal of Human Genetics. 100: 789-802. PMID 28475861 DOI: 10.1016/j.ajhg.2017.04.005  0.76
2017 He D, Wang Z, Parida L, Eskin E. IPED2: Inheritance Path based Pedigree Reconstruction Algorithm for Complicated Pedigrees. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 28368828 DOI: 10.1109/TCBB.2017.2688439  1
2017 Buckley MT, Racimo F, Allentoft ME, Jensen MK, Jonsson A, Huang H, Hormozdiari F, Sikora M, Marnetto D, Eskin E, Jørgensen ME, Grarup N, Pedersen O, Hansen T, Kraft P, et al. Selection in Europeans on fatty acid desaturases associated with dietary changes. Molecular Biology and Evolution. PMID 28333262 DOI: 10.1093/molbev/msx103  0.76
2017 Mangul S, Yang HT, Hormozdiari F, Dainis A, Tseng E, Ashley EA, Zelikovsky A, Eskin E. HapIso : An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads. Ieee Transactions On Nanobioscience. PMID 28328508 DOI: 10.1109/TNB.2017.2675981  0.76
2017 Rahmani E, Zaitlen N, Baran Y, Eng C, Hu D, Galanter J, Oh S, Burchard EG, Eskin E, Zou J, Halperin E. Correcting for cell-type heterogeneity in DNA methylation: a comprehensive evaluation. Nature Methods. 14: 218-219. PMID 28245214 DOI: 10.1038/nmeth.4190  0.96
2017 Bilow M, Crespo F, Pan Z, Eskin E, Eyheramendy S. Simultaneous Modeling of Disease Status and Clinical Phenotypes to Increase Power in GWAS. Genetics. PMID 28132020 DOI: 10.1534/genetics.116.198473  0.72
2016 Artyomenko A, Wu NC, Mangul S, Eskin E, Sun R, Zelikovsky A. Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 27901586 DOI: 10.1089/cmb.2016.0146  0.32
2016 Hormozdiari F, van de Bunt M, Segrè AV, Li X, Joo JW, Bilow M, Sul JH, Sankararaman S, Pasaniuc B, Eskin E. Colocalization of GWAS and eQTL Signals Detects Target Genes. American Journal of Human Genetics. PMID 27866706 DOI: 10.1016/j.ajhg.2016.10.003  1
2016 Joo JW, Kang EY, Org E, Furlotte N, Parks B, Hormozdiari F, Lusis AJ, Eskin E. Efficient and Accurate Multiple-Phenotype Regression Method for High Dimensional Data Considering Population Structure. Genetics. PMID 27770036 DOI: 10.1534/genetics.116.189712  0.8
2016 Kang EY, Martin L, Mangul S, Isvilanonda W, Zou J, Ben-David E, Han B, Lusis AJ, Shifman S, Eskin E. Discovering SNPs Regulating Human Gene Expression Using Allele Specific Expression from RNA-Seq Data. Genetics. PMID 27765809 DOI: 10.1534/genetics.115.177246  1
2016 Won H, de la Torre-Ubieta L, Stein JL, Parikshak NN, Huang J, Opland CK, Gandal MJ, Sutton GJ, Hormozdiari F, Lu D, Lee C, Eskin E, Voineagu I, Ernst J, Geschwind DH. Chromosome conformation elucidates regulatory relationships in developing human brain. Nature. PMID 27760116 DOI: 10.1038/nature19847  0.76
2016 Kichaev G, Roytman M, Johnson R, Eskin E, Lindström S, Kraft P, Pasaniuc B. Improved methods for multi-trait fine mapping of pleiotropic risk loci. Bioinformatics (Oxford, England). PMID 27663501 DOI: 10.1093/bioinformatics/btw615  0.64
2016 Main BJ, Lee Y, Ferguson HM, Kreppel KS, Kihonda A, Govella NJ, Collier TC, Cornel AJ, Eskin E, Kang EY, Nieman CC, Weakley AM, Lanzaro GC. The Genetic Basis of Host Preference and Resting Behavior in the Major African Malaria Vector, Anopheles arabiensis. Plos Genetics. 12: e1006303. PMID 27631375 DOI: 10.1371/journal.pgen.1006303  0.6
2016 Hasin-Brumshtein Y, Khan AH, Hormozdiari F, Pan C, Parks BW, Petyuk VA, Piehowski PD, Bruemmer A, Pellegrini M, Xiao X, Eskin E, Smith RD, Lusis AJ, Smith DJ. Hypothalamic transcriptomes of 99 mouse strains reveal trans eQTL hotspots, splicing QTLs and novel non-coding genes. Elife. 5. PMID 27623010 DOI: 10.7554/eLife.15614  0.76
2016 Lavinsky J, Ge M, Crow AL, Pan C, Wang J, Dermanaki PS, Myint A, Eskin E, Allayee H, Lusis AJ, Friedman RA. The Genetic Architecture of Noise-induced Hearing Loss: Evidence for a Gene-by-Environment Interaction. G3 (Bethesda, Md.). PMID 27520957 DOI: 10.1534/g3.116.032516  0.52
2016 Duong D, Zou J, Hormozdiari F, Sul JH, Ernst J, Han B, Eskin E. Using genomic annotations increases statistical power to detect eGenes. Bioinformatics (Oxford, England). 32: i156-i163. PMID 27307612 DOI: 10.1093/bioinformatics/btw272  1
2016 Hormozdiari F, Kang EY, Bilow M, Ben-David E, Vulpe C, McLachlan S, Lusis AJ, Han B, Eskin E. Imputing Phenotypes for Genome-wide Association Studies. American Journal of Human Genetics. PMID 27292110 DOI: 10.1016/j.ajhg.2016.04.013  1
2016 Schweiger R, Kaufman S, Laaksonen R, Kleber ME, März W, Eskin E, Rosset S, Halperin E. Fast and Accurate Construction of Confidence Intervals for Heritability. American Journal of Human Genetics. 98: 1181-92. PMID 27259052 DOI: 10.1016/j.ajhg.2016.04.016  0.48
2016 Kang EY, Park Y, Li X, Segrè AV, Han B, Eskin E. ForestPMPlot: A Flexible Tool for Visualizing Heterogeneity between Studies in Meta-analysis. G3 (Bethesda, Md.). PMID 27194809 DOI: 10.1534/g3.116.029439  1
2016 Peterson CB, Service SK, Jasinska AJ, Gao F, Zelaya I, Teshiba TM, Bearden CE, Cantor RM, Reus VI, Macaya G, López-Jaramillo C, Bogomolov M, Benjamini Y, Eskin E, Coppola G, et al. Characterization of Expression Quantitative Trait Loci in Pedigrees from Colombia and Costa Rica Ascertained for Bipolar Disorder. Plos Genetics. 12: e1006046. PMID 27176483 DOI: 10.1371/journal.pgen.1006046  1
2016 Lusis AJ, Seldin M, Allayee H, Bennett BJ, Civelek M, Davis RC, Eskin E, Farber C, Hui ST, Mehrabian M, Norheim F, Pan C, Parks B, Rau C, Smith DJ, et al. The Hybrid Mouse Diversity Panel: A Resource for Systems Genetics Analyses of Metabolic and Cardiovascular Traits. Journal of Lipid Research. PMID 27099397 DOI: 10.1194/jlr.R066944  1
2016 Joo JW, Hormozdiari F, Han B, Eskin E. Multiple testing correction in linear mixed models. Genome Biology. 17: 62. PMID 27039378 DOI: 10.1186/s13059-016-0903-6  1
2016 Rahmani E, Zaitlen N, Baran Y, Eng C, Hu D, Galanter J, Oh S, Burchard EG, Eskin E, Zou J, Halperin E. Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies. Nature Methods. PMID 27018579 DOI: 10.1038/nmeth.3809  1
2016 Sul JH, Bilow M, Yang WY, Kostem E, Furlotte N, He D, Eskin E. Accounting for Population Structure in Gene-by-Environment Interactions in Genome-Wide Association Studies Using Mixed Models. Plos Genetics. 12: e1005849. PMID 26943367 DOI: 10.1371/journal.pgen.1005849  1
2016 Bennett BJ, Davis RC, Civelek M, Orozco L, Wu J, Qi H, Pan C, Sevag Packard RR, Eskin E, Yan M, Kirchgessner T, Wang Z, Li X, Gregory JC, Hazen SL, et al. Correction: Genetic Architecture of Atherosclerosis in Mice: A Systems Genetics Analysis of Common Inbred Strains. Plos Genetics. 12: e1005913. PMID 26934746 DOI: 10.1371/journal.pgen.1005913  0.84
2016 Han B, Duong D, Sul JH, de Bakker PI, Eskin E, Raychaudhuri S. A general framework for meta-analyzing dependent studies with overlapping subjects in association mapping. Human Molecular Genetics. PMID 26908615 DOI: 10.1093/hmg/ddw049  1
2016 Artyomenko A, Wu NC, Mangul S, Eskin E, Sun R, Zelikovsky A. Long single-molecule reads can resolve the complexity of the influenza virus composed of rare, closely related mutant variants Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9649: 164-175. DOI: 10.1007/978-3-319-31957-5_12  1
2015 Bennett BJ, Davis RC, Civelek M, Orozco L, Wu J, Qi H, Pan C, Packard RR, Eskin E, Yan M, Kirchgessner T, Wang Z, Li X, Gregory JC, Hazen SL, et al. Genetic Architecture of Atherosclerosis in Mice: A Systems Genetics Analysis of Common Inbred Strains. Plos Genetics. 11: e1005711. PMID 26694027 DOI: 10.1371/journal.pgen.1005711  1
2015 Crow AL, Ohmen J, Wang J, Lavinsky J, Hartiala J, Li Q, Li X, Salehide P, Eskin E, Pan C, Lusis AJ, Allayee H, Friedman RA. The Genetic Architecture of Hearing Impairment in Mice: Evidence for Frequency Specific Genetic Determinants. G3 (Bethesda, Md.). PMID 26342000 DOI: 10.1534/g3.115.021592  1
2015 Org E, Parks BW, Joo JW, Emert B, Schwartzman W, Kang EY, Mehrabian M, Pan C, Knight R, Gunsalus R, Drake TA, Eskin E, Lusis AJ. Genetic and environmental control of host-gut microbiota interactions. Genome Research. PMID 26260972 DOI: 10.1101/gr.194118.115  1
2015 Rau CD, Parks B, Wang Y, Eskin E, Simecek P, Churchill GA, Lusis AJ. High Density Genotypes of Inbred Mouse Strains: Improved Power and Precision of Association Mapping. G3 (Bethesda, Md.). PMID 26224782 DOI: 10.1534/g3.115.020784  1
2015 Nanda V, Gutman B, Bar E, Alghamdi S, Tetradis S, Lusis AJ, Eskin E, Moon W. Quantitative analysis of 3-dimensional facial soft tissue photographic images: technical methods and clinical application. Progress in Orthodontics. 16: 21. PMID 26133934 DOI: 10.1186/s40510-015-0082-0  1
2015 Hormozdiari F, Kichaev G, Yang WY, Pasaniuc B, Eskin E. Identification of causal genes for complex traits. Bioinformatics (Oxford, England). 31: i206-i213. PMID 26072484 DOI: 10.1093/bioinformatics/btv240  1
2015 Lavinsky J, Crow AL, Pan C, Wang J, Aaron KA, Ho MK, Li Q, Salehide P, Myint A, Monges-Hernadez M, Eskin E, Allayee H, Lusis AJ, Friedman RA. Correction: Genome-Wide Association Study Identifies Nox3 as a Critical Gene for Susceptibility to Noise-Induced Hearing Loss. Plos Genetics. 11: e1005293. PMID 26068505 DOI: 10.1371/journal.pgen.1005293  0.52
2015 Zhou X, Crow AL, Hartiala J, Spindler TJ, Ghazalpour A, Barsky LW, Bennett BB, Parks BW, Eskin E, Jain R, Epstein JA, Lusis AJ, Adams GB, Allayee H. The Genetic Landscape of Hematopoietic Stem Cell Frequency in Mice. Stem Cell Reports. PMID 26050929 DOI: 10.1016/j.stemcr.2015.05.008  1
2015 Sul JH, Raj T, de Jong S, de Bakker PI, Raychaudhuri S, Ophoff RA, Stranger BE, Eskin E, Han B. Accurate and fast multiple-testing correction in eQTL studies. American Journal of Human Genetics. 96: 857-68. PMID 26027500 DOI: 10.1016/j.ajhg.2015.04.012  1
2015 Lavinsky J, Crow AL, Pan C, Wang J, Aaron KA, Ho MK, Li Q, Salehide P, Myint A, Monges-Hernadez M, Eskin E, Allayee H, Lusis AJ, Friedman RA. Genome-wide association study identifies nox3 as a critical gene for susceptibility to noise-induced hearing loss. Plos Genetics. 11: e1005094. PMID 25880434 DOI: 10.1371/journal.pgen.1005094  1
2015 Wang Z, Sul JH, Snir S, Lozano JA, Eskin E. Gene-Gene Interactions Detection Using a Two-stage Model. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 22: 563-76. PMID 25871811 DOI: 10.1089/cmb.2014.0163  1
2015 Furlotte NA, Eskin E. Efficient multiple-trait association and estimation of genetic correlation using the matrix-variate linear mixed model. Genetics. 200: 59-68. PMID 25724382 DOI: 10.1534/genetics.114.171447  1
2015 Luykx JJ, Bakker SC, Visser WF, Verhoeven-Duif N, Buizer-Voskamp JE, den Heijer JM, Boks MP, Sul JH, Eskin E, Ori AP, Cantor RM, Vorstman J, Strengman E, DeYoung J, Kappen TH, et al. Genome-wide association study of NMDA receptor coagonists in human cerebrospinal fluid and plasma. Molecular Psychiatry. PMID 25666758 DOI: 10.1038/mp.2014.190  1
2015 Hormozdiari F, Eskin E. Memory efficient assembly of human genome. Journal of Bioinformatics and Computational Biology. 13: 1550008. PMID 25603998 DOI: 10.1142/S0219720015500080  1
2015 Yang WY, Hormozdiari F, Eskin E, Pasaniuc B. A spatial haplotype copying model with applications to genotype imputation. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 22: 451-62. PMID 25526526 DOI: 10.1089/cmb.2014.0151  1
2015 Eskin E. Discovering genes involved in disease and the mystery of missing heritability Communications of the Acm. 58: 80-87. DOI: 10.1145/2817827  1
2015 Hiyari S, Atti E, Camargo PM, Eskin E, Lusis AJ, Tetradis S, Pirih FQ. Heritability of periodontal bone loss in mice Journal of Periodontal Research. 50: 730-736. DOI: 10.1111/jre.12258  1
2015 Artyomenko A, Wu NC, Mangul S, Eskin E, Sun R, Zelikovsky A. 2SNV: Quasispecies reconstruction from PacBio reads 2015 Ieee 5th International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2015. DOI: 10.1109/ICCABS.2015.7344730  1
2015 Joo JWJ, Kang EY, Org E, Furlotte N, Parks B, Lusis AJ, Eskin E. Efficient and accurate multiple-phenotypes regression method for high dimensional data considering population structure Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9029: 136-153. DOI: 10.1007/978-3-319-16706-0_15  1
2014 He D, Eskin E. IPED2X: a robust pedigree reconstruction algorithm for complicated pedigrees. Journal of Bioinformatics and Computational Biology. 12: 1442007. PMID 25553812 DOI: 10.1142/S0219720014420074  1
2014 Yang WY, Platt A, Chiang CW, Eskin E, Novembre J, Pasaniuc B. Spatial localization of recent ancestors for admixed individuals. G3 (Bethesda, Md.). 4: 2505-18. PMID 25371484 DOI: 10.1534/g3.114.014274  1
2014 Kichaev G, Yang WY, Lindstrom S, Hormozdiari F, Eskin E, Price AL, Kraft P, Pasaniuc B. Integrating functional data to prioritize causal variants in statistical fine-mapping studies. Plos Genetics. 10: e1004722. PMID 25357204 DOI: 10.1371/journal.pgen.1004722  1
2014 Hormozdiari F, Kostem E, Kang EY, Pasaniuc B, Eskin E. Identifying causal variants at loci with multiple signals of association. Genetics. 198: 497-508. PMID 25104515 DOI: 10.1534/genetics.114.167908  1
2014 Mangul S, Wu NC, Mancuso N, Zelikovsky A, Sun R, Eskin E. Accurate viral population assembly from ultra-deep sequencing data. Bioinformatics (Oxford, England). 30: i329-37. PMID 24932001 DOI: 10.1093/bioinformatics/btu295  1
2014 Hormozdiari F, Joo JW, Wadia A, Guan F, Ostrosky R, Sahai A, Eskin E. Privacy preserving protocol for detecting genetic relatives using rare variants. Bioinformatics (Oxford, England). 30: i204-11. PMID 24931985 DOI: 10.1093/bioinformatics/btu294  1
2014 Hasin-Brumshtein Y, Hormozdiari F, Martin L, van Nas A, Eskin E, Lusis AJ, Drake TA. Allele-specific expression and eQTL analysis in mouse adipose tissue. Bmc Genomics. 15: 471. PMID 24927774 DOI: 10.1186/1471-2164-15-471  1
2014 Joo JW, Sul JH, Han B, Ye C, Eskin E. Effectively identifying regulatory hotspots while capturing expression heterogeneity in gene expression studies. Genome Biology. 15: r61. PMID 24708878 DOI: 10.1186/gb-2014-15-4-r61  1
2014 He D, Furlotte NA, Hormozdiari F, Joo JW, Wadia A, Ostrovsky R, Sahai A, Eskin E. Identifying genetic relatives without compromising privacy. Genome Research. 24: 664-72. PMID 24614977 DOI: 10.1101/gr.153346.112  1
2014 Ohmen J, Kang EY, Li X, Joo JW, Hormozdiari F, Zheng QY, Davis RC, Lusis AJ, Eskin E, Friedman RA. Genome-wide association study for age-related hearing loss (AHL) in the mouse: a meta-analysis. Journal of the Association For Research in Otolaryngology : Jaro. 15: 335-52. PMID 24570207 DOI: 10.1007/s10162-014-0443-2  1
2014 Zhang K, Huentelman MJ, Rao F, Sun EI, Corneveaux JJ, Schork AJ, Wei Z, Waalen J, Miramontes-Gonzalez JP, Hightower CM, Maihofer AX, Mahata M, Pastinen T, Ehret GB, ... ... Eskin E, et al. Genetic implication of a novel thiamine transporter in human hypertension. Journal of the American College of Cardiology. 63: 1542-55. PMID 24509276 DOI: 10.1016/j.jacc.2014.01.007  1
2014 Kang EY, Han B, Furlotte N, Joo JW, Shih D, Davis RC, Lusis AJ, Eskin E. Meta-analysis identifies gene-by-environment interactions as demonstrated in a study of 4,965 mice. Plos Genetics. 10: e1004022. PMID 24415945 DOI: 10.1371/journal.pgen.1004022  1
2014 Marsden CD, Lee Y, Kreppel K, Weakley A, Cornel A, Ferguson HM, Eskin E, Lanzaro GC. Diversity, differentiation, and linkage disequilibrium: prospects for association mapping in the malaria vector Anopheles arabiensis. G3 (Bethesda, Md.). 4: 121-31. PMID 24281424 DOI: 10.1534/g3.113.008326  1
2014 Han B, Kang EY, Raychaudhuri S, de Bakker PI, Eskin E. Fast pairwise IBD association testing in genome-wide association studies. Bioinformatics (Oxford, England). 30: 206-13. PMID 24158599 DOI: 10.1093/bioinformatics/btt609  1
2014 Luykx JJ, Bakker SC, Lentjes E, Neeleman M, Strengman E, Mentink L, DeYoung J, de Jong S, Sul JH, Eskin E, van Eijk K, van Setten J, Buizer-Voskamp JE, Cantor RM, Lu A, et al. Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. Molecular Psychiatry. 19: 228-34. PMID 23319000 DOI: 10.1038/mp.2012.183  1
2014 Hersch M, Peter B, Kang HM, Schüpfer F, Abriel H, Pedrazzini T, Eskin E, Beckmann JS, Bergmann S, Maurer F. Correction: Mapping genetic variants associated with beta-adrenergic responses in inbred mice (PLoS ONE) Plos One. 9. DOI: 10.1371/annotation/16d5801b-2701-4ec9-9d8e-278791a8a26a  1
2014 He D, Wang Z, Parida L, Eskin E. IPED2: Inheritance path based pedigree reconstruction algorithm for complicated pedigrees Acm Bcb 2014 - 5th Acm Conference On Bioinformatics, Computational Biology, and Health Informatics. 202-210. DOI: 10.1145/2649387.2649438  1
2014 Artyomenko A, Mangul S, Wu NC, Eskin E, Sun R, Zelikovsky A. Reconstruction of influenza a virus variants from PacBio reads 2014 Ieee 4th International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2014. DOI: 10.1109/ICCABS.2014.6863935  1
2014 Mangul S, Wu NC, Mancuso N, Zelikovsky A, Sun R, Eskin E. VGA: A method for viral quasispecies assembly from ultra-deep sequencing data 2014 Ieee 4th International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2014. DOI: 10.1109/ICCABS.2014.6863932  1
2014 Yang WY, Hormozdiari F, Eskin E, Pasaniuc B. A spatial-aware haplotype copying model with applications to genotype imputation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8394: 371-384. DOI: 10.1007/978-3-319-05269-4_30  1
2013 Eskin I, Hormozdiari F, Conde L, Riby J, Skibola CF, Eskin E, Halperin E. eALPS: estimating abundance levels in pooled sequencing using available genotyping data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 861-77. PMID 24144111 DOI: 10.1089/cmb.2013.0105  1
2013 He D, Wang Z, Han B, Parida L, Eskin E. IPED: inheritance path-based pedigree reconstruction algorithm using genotype data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 780-91. PMID 24093229 DOI: 10.1089/cmb.2013.0080  1
2013 Kostem E, Eskin E. Efficiently identifying significant associations in genome-wide association studies. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 817-30. PMID 24033261 DOI: 10.1089/cmb.2013.0087  1
2013 Lagarrigue S, Martin L, Hormozdiari F, Roux PF, Pan C, van Nas A, Demeure O, Cantor R, Ghazalpour A, Eskin E, Lusis AJ. Analysis of allele-specific expression in mouse liver by RNA-Seq: a comparison with Cis-eQTL identified using genetic linkage. Genetics. 195: 1157-66. PMID 24026101 DOI: 10.1534/genetics.113.153882  1
2013 Yang WY, Hormozdiari F, Wang Z, He D, Pasaniuc B, Eskin E. Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data. Bioinformatics (Oxford, England). 29: 2245-52. PMID 23825370 DOI: 10.1093/bioinformatics/btt386  1
2013 Sul JH, Han B, Ye C, Choi T, Eskin E. Effectively identifying eQTLs from multiple tissues by combining mixed model and meta-analytic approaches. Plos Genetics. 9: e1003491. PMID 23785294 DOI: 10.1371/journal.pgen.1003491  1
2013 Navon O, Sul JH, Han B, Conde L, Bracci PM, Riby J, Skibola CF, Eskin E, Halperin E. Rare variant association testing under low-coverage sequencing. Genetics. 194: 769-79. PMID 23636738 DOI: 10.1534/genetics.113.150169  1
2013 Leikauf GD, Concel VJ, Bein K, Liu P, Berndt A, Martin TM, Ganguly K, Jang AS, Brant KA, Dopico RA, Upadhyay S, Cario C, Di YP, Vuga LJ, Kostem E, ... Eskin E, et al. Functional genomic assessment of phosgene-induced acute lung injury in mice. American Journal of Respiratory Cell and Molecular Biology. 49: 368-83. PMID 23590305 DOI: 10.1165/rcmb.2012-0337OC  1
2013 Kostem E, Eskin E. Improving the accuracy and efficiency of partitioning heritability into the contributions of genomic regions. American Journal of Human Genetics. 92: 558-64. PMID 23561845 DOI: 10.1016/j.ajhg.2013.03.010  1
2013 Sul JH, Eskin E. Mixed models can correct for population structure for genomic regions under selection. Nature Reviews. Genetics. 14: 300. PMID 23438871 DOI: 10.1038/nrg2813-c1  1
2013 Wang Z, Hormozdiari F, Yang WY, Halperin E, Eskin E. CNVeM: copy number variation detection using uncertainty of read mapping. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 224-36. PMID 23421794 DOI: 10.1089/cmb.2012.0258  1
2013 Davis RC, van Nas A, Bennett B, Orozco L, Pan C, Rau CD, Eskin E, Lusis AJ. Genome-wide association mapping of blood cell traits in mice. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 24: 105-18. PMID 23417284 DOI: 10.1007/s00335-013-9448-0  1
2013 Lagarrigue S, Hormozdiari F, Martin LJ, Lecerf F, Hasin Y, Rau C, Hagopian R, Xiao Y, Yan J, Drake TA, Ghazalpour A, Eskin E, Lusis AJ. Limited RNA editing in exons of mouse liver and adipose. Genetics. 193: 1107-15. PMID 23410828 DOI: 10.1534/genetics.112.149054  1
2013 He D, Han B, Eskin E. Hap-seq: an optimal algorithm for haplotype phasing with imputation using sequencing data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 80-92. PMID 23383995 DOI: 10.1089/cmb.2012.0091  1
2013 Parrish N, Sudakov B, Eskin E. Genome reassembly with high-throughput sequencing data. Bmc Genomics. 14: S8. PMID 23368744 DOI: 10.1186/1471-2164-14-S1-S8  1
2013 Parks BW, Nam E, Org E, Kostem E, Norheim F, Hui ST, Pan C, Civelek M, Rau CD, Bennett BJ, Mehrabian M, Ursell LK, He A, Castellani LW, Zinker B, ... ... Eskin E, et al. Genetic control of obesity and gut microbiota composition in response to high-fat, high-sucrose diet in mice. Cell Metabolism. 17: 141-52. PMID 23312289 DOI: 10.1016/j.cmet.2012.12.007  1
2013 He D, Eskin E. Hap-seqX: expedite algorithm for haplotype phasing with imputation using sequence data. Gene. 518: 2-6. PMID 23269365 DOI: 10.1016/j.gene.2012.11.093  1
2013 He D, Eskin E. IPEDX: An exact algorithm for pedigree reconstruction using genotype data Proceedings - 2013 Ieee International Conference On Bioinformatics and Biomedicine, Ieee Bibm 2013. 517-520. DOI: 10.1109/BIBM.2013.6732549  1
2013 He D, Wang Z, Han B, Parida L, Eskin E. IPED: Inheritance path based pedigree reconstruction algorithm using genotype data Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7821: 75-87. DOI: 10.1007/978-3-642-37195-0_7  1
2012 Miller MB, Basu S, Cunningham J, Eskin E, Malone SM, Oetting WS, Schork N, Sul JH, Iacono WG, McGue M. The Minnesota Center for Twin and Family Research genome-wide association study. Twin Research and Human Genetics : the Official Journal of the International Society For Twin Studies. 15: 767-74. PMID 23363460 DOI: 10.1017/thg.2012.62  1
2012 Calabrese G, Bennett BJ, Orozco L, Kang HM, Eskin E, Dombret C, De Backer O, Lusis AJ, Farber CR. Systems genetic analysis of osteoblast-lineage cells. Plos Genetics. 8: e1003150. PMID 23300464 DOI: 10.1371/journal.pgen.1003150  1
2012 Flint J, Eskin E. Genome-wide association studies in mice. Nature Reviews. Genetics. 13: 807-17. PMID 23044826 DOI: 10.1038/nrg3335  1
2012 Ghazalpour A, Rau CD, Farber CR, Bennett BJ, Orozco LD, van Nas A, Pan C, Allayee H, Beaven SW, Civelek M, Davis RC, Drake TA, Friedman RA, Furlotte N, Hui ST, ... ... Eskin E, et al. Hybrid mouse diversity panel: a panel of inbred mouse strains suitable for analysis of complex genetic traits. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 23: 680-92. PMID 22892838 DOI: 10.1007/s00335-012-9411-5  1
2012 Hersch M, Peter B, Kang HM, Schüpfer F, Abriel H, Pedrazzini T, Eskin E, Beckmann JS, Bergmann S, Maurer F. Mapping genetic variants associated with beta-adrenergic responses in inbred mice. Plos One. 7: e41032. PMID 22859963 DOI: 10.1371/journal.pone.0041032  1
2012 Weiss JN, Karma A, MacLellan WR, Deng M, Rau CD, Rees CM, Wang J, Wisniewski N, Eskin E, Horvath S, Qu Z, Wang Y, Lusis AJ. "Good enough solutions" and the genetics of complex diseases. Circulation Research. 111: 493-504. PMID 22859671 DOI: 10.1161/CIRCRESAHA.112.269084  1
2012 Bennett BJ, Orozco L, Kostem E, Erbilgin A, Dallinga M, Neuhaus I, Guan B, Wang X, Eskin E, Lusis AJ. High-resolution association mapping of atherosclerosis loci in mice. Arteriosclerosis, Thrombosis, and Vascular Biology. 32: 1790-8. PMID 22723443 DOI: 10.1161/ATVBAHA.112.253864  1
2012 Darnell G, Duong D, Han B, Eskin E. Incorporating prior information into association studies. Bioinformatics (Oxford, England). 28: i147-53. PMID 22689754 DOI: 10.1093/bioinformatics/bts235  1
2012 Friese RS, Ye C, Nievergelt CM, Schork AJ, Mahapatra NR, Rao F, Napolitan PS, Waalen J, Ehret GB, Munroe PB, Schmid-Schönbein GW, Eskin E, O'Connor DT. Integrated computational and experimental analysis of the neuroendocrine transcriptome in genetic hypertension identifies novel control points for the cardiometabolic syndrome. Circulation. Cardiovascular Genetics. 5: 430-40. PMID 22670052 DOI: 10.1161/CIRCGENETICS.111.962415  1
2012 Listgarten J, Lippert C, Kadie CM, Davidson RI, Eskin E, Heckerman D. Improved linear mixed models for genome-wide association studies. Nature Methods. 9: 525-6. PMID 22669648 DOI: 10.1038/nmeth.2037  1
2012 Yang WY, Novembre J, Eskin E, Halperin E. A model-based approach for analysis of spatial structure in genetic data Nature Genetics. 44: 725-731. PMID 22610118 DOI: 10.1038/ng.2285  1
2012 Furlotte NA, Eskin E, Eyheramendy S. Genome-wide association mapping with longitudinal data. Genetic Epidemiology. 36: 463-71. PMID 22581622 DOI: 10.1002/gepi.21640  1
2012 Furlotte NA, Kang EY, Van Nas A, Farber CR, Lusis AJ, Eskin E. Increasing association mapping power and resolution in mouse genetic studies through the use of meta-analysis for structured populations. Genetics. 191: 959-67. PMID 22505625 DOI: 10.1534/genetics.112.140277  1
2012 Han B, Eskin E. Interpreting meta-analyses of genome-wide association studies. Plos Genetics. 8: e1002555. PMID 22396665 DOI: 10.1371/journal.pgen.1002555  1
2011 Parrish N, Hormozdiari F, Eskin E. Assembly of non-unique insertion content using next-generation sequencing. Bmc Bioinformatics. 12: S3. PMID 21989261 DOI: 10.1186/1471-2105-12-S6-S3  1
2011 He D, Zaitlen N, Pasaniuc B, Eskin E, Halperin E. Genotyping common and rare variation using overlapping pool sequencing. Bmc Bioinformatics. 12: S2. PMID 21989232 DOI: 10.1186/1471-2105-12-S6-S2  1
2011 Keane TM, Goodstadt L, Danecek P, White MA, Wong K, Yalcin B, Heger A, Agam A, Slater G, Goodson M, Furlotte NA, Eskin E, NellÃ¥ker C, Whitley H, Cleak J, et al. Mouse genomic variation and its effect on phenotypes and gene regulation. Nature. 477: 289-94. PMID 21921910 DOI: 10.1038/nature10413  1
2011 Sul JH, Han B, Eskin E. Increasing power of groupwise association test with likelihood ratio test. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1611-24. PMID 21919745 DOI: 10.1089/cmb.2011.0161  1
2011 Ghazalpour A, Bennett B, Petyuk VA, Orozco L, Hagopian R, Mungrue IN, Farber CR, Sinsheimer J, Kang HM, Furlotte N, Park CC, Wen PZ, Brewer H, Weitz K, Camp DG, ... ... Eskin E, et al. Comparative analysis of proteome and transcriptome variation in mouse. Plos Genetics. 7: e1001393. PMID 21695224 DOI: 10.1371/journal.pgen.1001393  1
2011 Furlotte NA, Kang HM, Ye C, Eskin E. Mixed-model coexpression: calculating gene coexpression while accounting for expression heterogeneity. Bioinformatics (Oxford, England). 27: i288-94. PMID 21685083 DOI: 10.1093/bioinformatics/btr221  1
2011 Han B, Eskin E. Random-effects model aimed at discovering associations in meta-analysis of genome-wide association studies. American Journal of Human Genetics. 88: 586-98. PMID 21565292 DOI: 10.1016/j.ajhg.2011.04.014  1
2011 Van Tyne D, Park DJ, Schaffner SF, Neafsey DE, Angelino E, Cortese JF, Barnes KG, Rosen DM, Lukens AK, Daniels RF, Milner DA, Johnson CA, Shlyakhter I, Grossman SR, Becker JS, ... ... Eskin E, et al. Identification and functional validation of the novel antimalarial resistance locus PF10_0355 in Plasmodium falciparum. Plos Genetics. 7: e1001383. PMID 21533027 DOI: 10.1371/journal.pgen.1001383  1
2011 He D, Hormozdiari F, Furlotte N, Eskin E. Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions. Bioinformatics (Oxford, England). 27: 1513-20. PMID 21505028 DOI: 10.1093/bioinformatics/btr169  1
2011 Farber CR, Bennett BJ, Orozco L, Zou W, Lira A, Kostem E, Kang HM, Furlotte N, Berberyan A, Ghazalpour A, Suwanwela J, Drake TA, Eskin E, Wang QT, Teitelbaum SL, et al. Mouse genome-wide association and systems genetics identify Asxl2 as a regulator of bone mineral density and osteoclastogenesis. Plos Genetics. 7: e1002038. PMID 21490954 DOI: 10.1371/journal.pgen.1002038  1
2011 Kostem E, Lozano JA, Eskin E. Increasing power of genome-wide association studies by collecting additional single-nucleotide polymorphisms. Genetics. 188: 449-60. PMID 21467568 DOI: 10.1534/genetics.111.128595  1
2011 Park CC, Gale GD, de Jong S, Ghazalpour A, Bennett BJ, Farber CR, Langfelder P, Lin A, Khan AH, Eskin E, Horvath S, Lusis AJ, Ophoff RA, Smith DJ. Gene networks associated with conditional fear in mice identified using a systems genetics approach. Bmc Systems Biology. 5: 43. PMID 21410935 DOI: 10.1186/1752-0509-5-43  1
2011 Sul JH, Han B, He D, Eskin E. An optimal weighted aggregated association test for identification of rare variants involved in common diseases. Genetics. 188: 181-8. PMID 21368279 DOI: 10.1534/genetics.110.125070  1
2011 Han B, Hackel BM, Eskin E. Postassociation cleaning using linkage disequilibrium information. Genetic Epidemiology. 35: 1-10. PMID 21181893 DOI: 10.1002/gepi.20544  1
2011 Kenny EE, Kim M, Gusev A, Lowe JK, Salit J, Smith JG, Kovvali S, Kang HM, Newton-Cheh C, Daly MJ, Stoffel M, Altshuler DM, Friedman JM, Eskin E, Breslow JL, et al. Increased power of mixed models facilitates association mapping of 10 loci for metabolic traits in an isolated population. Human Molecular Genetics. 20: 827-39. PMID 21118897 DOI: 10.1093/hmg/ddq510  1
2011 McLachlan S, Lee SM, Steele TM, Hawthorne PL, Zapala MA, Eskin E, Schork NJ, Anderson GJ, Vulpe CD. In silico QTL mapping of basal liver iron levels in inbred mouse strains. Physiological Genomics. 43: 136-47. PMID 21062905 DOI: 10.1152/physiolgenomics.00025.2010  1
2011 He D, Kunwar P, Eskin E, Horton H, Gilbert P, Hertz T. Using HLA binding prediction algorithms for epitope mapping in HIV vaccine clinical trials 2011 Acm Conference On Bioinformatics, Computational Biology and Biomedicine, Bcb 2011. 594-601. DOI: 10.1145/2147805.2147907  1
2011 Bebek G, Chance M, Koyuturk M, Price ND, De La Vega FM, Bustamante CD, Leal SM, Foster J, Moore J, Bernauer J, Flores S, Huang X, Shin S, Zhou R, Alkan C, ... ... Eskin E, et al. Pacific symposium on biocomputing 2011 Pacific Symposium On Biocomputing 2011, Psb 2011. v.  0.76
2010 He D, Furlotte N, Eskin E. Detection and reconstruction of tandemly organized de novo copy number variations. Bmc Bioinformatics. 11: S12. PMID 21172047 DOI: 10.1186/1471-2105-11-S11-S12  1
2010 Zaitlen N, Eskin E. Imputation aware meta-analysis of genome-wide association studies. Genetic Epidemiology. 34: 537-42. PMID 20717975 DOI: 10.1002/gepi.20507  1
2010 Santana R, Mendiburu A, Zaitlen N, Eskin E, Lozano JA. Multi-marker tagging single nucleotide polymorphism selection using estimation of distribution algorithms. Artificial Intelligence in Medicine. 50: 193-201. PMID 20650616 DOI: 10.1016/j.artmed.2010.05.010  1
2010 He D, Choi A, Pipatsrisawat K, Darwiche A, Eskin E. Optimal algorithms for haplotype assembly from whole-genome sequence data. Bioinformatics (Oxford, England). 26: i183-90. PMID 20529904 DOI: 10.1093/bioinformatics/btq215  1
2010 Kirby A, Kang HM, Wade CM, Cotsapas C, Kostem E, Han B, Furlotte N, Kang EY, Rivas M, Bogue MA, Frazer KA, Johnson FM, Beilharz EJ, Cox DR, Eskin E, et al. Fine mapping in 94 inbred mouse strains using a high-density haplotype resource. Genetics. 185: 1081-95. PMID 20439770 DOI: 10.1534/genetics.110.115014  1
2010 Kang HM, Zaitlen NA, Eskin E. EMINIM: an adaptive and memory-efficient algorithm for genotype imputation. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 547-60. PMID 20377463 DOI: 10.1089/cmb.2009.0199  1
2010 Kang EY, Ye C, Shpitser I, Eskin E. Detecting the presence and absence of causal relationships between expression of yeast genes with very few samples. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 533-46. PMID 20377462 DOI: 10.1089/cmb.2009.0176  1
2010 Zhang K, Weder AB, Eskin E, O'Connor DT. Genome-wide case/control studies in hypertension: only the 'tip of the iceberg'. Journal of Hypertension. 28: 1115-23. PMID 20216088 DOI: 10.1097/HJH.0b013e328337f6bc  1
2010 Kang HM, Sul JH, Service SK, Zaitlen NA, Kong SY, Freimer NB, Sabatti C, Eskin E. Variance component model to account for sample structure in genome-wide association studies. Nature Genetics. 42: 348-54. PMID 20208533 DOI: 10.1038/ng.548  1
2010 Stein JL, Hua X, Morra JH, Lee S, Hibar DP, Ho AJ, Leow AD, Toga AW, Sul JH, Kang HM, Eskin E, Saykin AJ, Shen L, Foroud T, Pankratz N, et al. Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease. Neuroimage. 51: 542-54. PMID 20197096 DOI: 10.1016/j.neuroimage.2010.02.068  1
2010 Bennett BJ, Farber CR, Orozco L, Kang HM, Ghazalpour A, Siemers N, Neubauer M, Neuhaus I, Yordanova R, Guan B, Truong A, Yang WP, He A, Kayne P, Gargalovic P, ... ... Eskin E, et al. A high-resolution association mapping panel for the dissection of complex traits in mice. Genome Research. 20: 281-90. PMID 20054062 DOI: 10.1101/gr.099234.109  1
2010 He D, Eskin E. Effective algorithms for fusion gene detection Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6293: 312-324. DOI: 10.1007/978-3-642-15294-8_26  1
2010 Yong Kang E, Shpitser I, Eskin E. Respecting Markov equivalence in computing posterior probabilities of causal graphical features Proceedings of the National Conference On Artificial Intelligence. 2: 1175-1180.  1
2009 Yang IV, Wade CM, Kang HM, Alper S, Rutledge H, Lackford B, Eskin E, Daly MJ, Schwartz DA. Identification of novel genes that mediate innate immunity using inbred mice. Genetics. 183: 1535-44. PMID 19805818 DOI: 10.1534/genetics.109.107540  1
2009 Rana BK, Wessel J, Mahboubi V, Rao F, Haeller J, Gayen JR, Eskin E, Valle AM, Das M, Mahata SK, Taupenot L, Stridsberg M, Talley TT, Ziegler MG, Smith DW, et al. Natural variation within the neuronal nicotinic acetylcholine receptor cluster on human chromosome 15q24: influence on heritable autonomic traits in twin pairs. The Journal of Pharmacology and Experimental Therapeutics. 331: 419-28. PMID 19671882 DOI: 10.1124/jpet.109.157271  1
2009 Smith EN, Bloss CS, Badner JA, Barrett T, Belmonte PL, Berrettini W, Byerley W, Coryell W, Craig D, Edenberg HJ, Eskin E, Foroud T, Gershon E, Greenwood TA, Hipolito M, et al. Genome-wide association study of bipolar disorder in European American and African American individuals. Molecular Psychiatry. 14: 755-63. PMID 19488044 DOI: 10.1038/mp.2009.43  1
2009 Han B, Kang HM, Eskin E. Rapid and accurate multiple testing correction and power estimation for millions of correlated markers. Plos Genetics. 5: e1000456. PMID 19381255 DOI: 10.1371/journal.pgen.1000456  1
2009 Zaitlen N, Kang HM, Eskin E. Linkage effects and analysis of finite sample errors in the HapMap. Human Heredity. 68: 73-86. PMID 19365134 DOI: 10.1159/000212500  1
2009 Ye C, Galbraith SJ, Liao JC, Eskin E. Using network component analysis to dissect regulatory networks mediated by transcription factors in yeast. Plos Computational Biology. 5: e1000311. PMID 19300475 DOI: 10.1371/journal.pcbi.1000311  1
2009 Kang HM, Zaitlen NA, Han B, Eskin E. An adaptive and memory efficient algorithm for genotype imputation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5541: 482-495. DOI: 10.1007/978-3-642-02008-7_34  1
2008 Kang HM, Ye C, Eskin E. Accurate discovery of expression quantitative trait loci under confounding from spurious and genuine regulatory hotspots. Genetics. 180: 1909-25. PMID 18791227 DOI: 10.1534/genetics.108.094201  1
2008 Han B, Kang HM, Seo MS, Zaitlen N, Eskin E. Efficient association study design via power-optimized tag SNP selection Annals of Human Genetics. 72: 834-847. PMID 18702637 DOI: 10.1111/j.1469-1809.2008.00469.x  1
2008 Ghazalpour A, Doss S, Kang H, Farber C, Wen PZ, Brozell A, Castellanos R, Eskin E, Smith DJ, Drake TA, Lusis AJ. High-resolution mapping of gene expression using association in an outbred mouse stock. Plos Genetics. 4: e1000149. PMID 18688273 DOI: 10.1371/journal.pgen.1000149  1
2008 Kang HM, Zaitlen NA, Wade CM, Kirby A, Heckerman D, Daly MJ, Eskin E. Efficient control of population structure in model organism association mapping. Genetics. 178: 1709-23. PMID 18385116 DOI: 10.1534/genetics.107.080101  1
2008 Eskin E. Increasing power in association studies by using linkage disequilibrium structure and molecular function as prior information. Genome Research. 18: 653-60. PMID 18353808 DOI: 10.1101/gr.072785.107  1
2008 Olshen AB, Gold B, Lohmueller KE, Struewing JP, Satagopan J, Stefanov SA, Eskin E, Kirchhoff T, Lautenberger JA, Klein RJ, Friedman E, Norton L, Ellis NA, Viale A, Lee CS, et al. Analysis of genetic variation in Ashkenazi Jews by high density SNP genotyping. Bmc Genetics. 9: 14. PMID 18251999 DOI: 10.1186/1471-2156-9-14  1
2008 Choi A, Zaitlen N, Han B, Pipatsrisawat K, Darwiche A, Eskin E. Efficient genome wide tagging by reduction to SAT Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5251: 135-147. DOI: 10.1007/978-3-540-87361-7_12  1
2007 Barrett TB, Emberton JE, Nievergelt CM, Liang SG, Hauger RL, Eskin E, Schork NJ, Kelsoe JR. Further evidence for association of GRK3 to bipolar disorder suggests a second disease mutation. Psychiatric Genetics. 17: 315-22. PMID 18075471 DOI: 10.1097/YPG.0b013e3282efeeb4  1
2007 Eskin E, Snir S. Incorporating homologues into sequence embeddings for protein analysis. Journal of Bioinformatics and Computational Biology. 5: 717-38. PMID 17688313 DOI: 10.1142/S0219720007002734  1
2007 Frazer KA, Eskin E, Kang HM, Bogue MA, Hinds DA, Beilharz EJ, Gupta RV, Montgomery J, Morenzoni MM, Nilsen GB, Pethiyagoda CL, Stuve LL, Johnson FM, Daly MJ, Wade CM, et al. A sequence-based variation map of 8.27 million SNPs in inbred mouse strains. Nature. 448: 1050-3. PMID 17660834 DOI: 10.1038/nature06067  1
2007 Rao F, Wen G, Gayen JR, Das M, Vaingankar SM, Rana BK, Mahata M, Kennedy BP, Salem RM, Stridsberg M, Abel K, Smith DW, Eskin E, Schork NJ, Hamilton BA, et al. Catecholamine release-inhibitory peptide catestatin (chromogranin A(352-372)): naturally occurring amino acid variant Gly364Ser causes profound changes in human autonomic activity and alters risk for hypertension. Circulation. 115: 2271-81. PMID 17438154 DOI: 10.1161/CIRCULATIONAHA.106.628859  1
2007 Zaitlen N, Kang HM, Eskin E, Halperin E. Leveraging the HapMap correlation structure in association studies. American Journal of Human Genetics. 80: 683-91. PMID 17357074 DOI: 10.1086/513109  1
2007 Ye C, Eskin E. Discovering tightly regulated and differentially expressed gene sets in whole genome expression data. Bioinformatics (Oxford, England). 23: e84-90. PMID 17237110 DOI: 10.1093/bioinformatics/btl315  1
2007 O'Rourke S, Zaitlen N, Jojic N, Eskin E. Reconstructing the phylogeny of mobile elements Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4453: 196-210.  1
2007 Corona E, Raphael B, Eskin E. Identification of deletion polymorphisms from haplotypes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4453: 354-365.  1
2006 Eskin E, Sharan R, Halperin E. A note on phasing long genomic regions using local haplotype predictions. Journal of Bioinformatics and Computational Biology. 4: 639-47. PMID 16960967 DOI: 10.1142/S0219720006002272  1
2006 O'Rourke S, Chechik G, Friedman R, Eskin E. Discrete profile comparison using information bottleneck. Bmc Bioinformatics. 7: S8. PMID 16723011 DOI: 10.1186/1471-2105-7-S1-S8  1
2006 Marchini J, Cutler D, Patterson N, Stephens M, Eskin E, Halperin E, Lin S, Qin ZS, Munro HM, Abecasis GR, Donnelly P. A comparison of phasing algorithms for trios and unrelated individuals. American Journal of Human Genetics. 78: 437-50. PMID 16465620 DOI: 10.1086/500808  1
2006 Riddle EL, Rana BK, Murthy KK, Rao F, Eskin E, O'Connor DT, Insel PA. Polymorphisms and haplotypes of the regulator of G protein signaling-2 gene in normotensives and hypertensives. Hypertension. 47: 415-20. PMID 16432041 DOI: 10.1161/01.HYP.0000200714.81990.61  1
2006 Greenwood TA, Schork NJ, Eskin E, Kelsoe JR. Identification of additional variants within the human dopamine transporter gene provides further evidence for an association with bipolar disorder in two independent samples. Molecular Psychiatry. 11: 125-33, 115. PMID 16261167 DOI: 10.1038/sj.mp.4001764  1
2006 Greenwood TA, Schork NJ, Eskin E, Kelsoe JR. Distribution of linkage disequilibrium across the dopamine transporter gene (DAT1) Molecular Psychiatry. 11: 115. DOI: 10.1038/sj.mp.4001795  1
2006 Aerni SJ, Eskin E. 10 Years of the International Conference on Research in Computational Molecular Biology (RECOMB) Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3909: 546-562. DOI: 10.1007/11732990_45  1
2005 Zhang S, Haas B, Eskin E, Bafna V. Searching genomes for noncoding RNA using FastR. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 2: 366-79. PMID 17044173 DOI: 10.1109/TCBB.2005.57  1
2005 Zaitlen NA, Kang HM, Feolo ML, Sherry ST, Halperin E, Eskin E. Inference and analysis of haplotypes from combined genotyping studies deposited in dbSNP. Genome Research. 15: 1594-600. PMID 16251470 DOI: 10.1101/gr.4297805  1
2005 Hinds DA, Stuve LL, Nilsen GB, Halperin E, Eskin E, Ballinger DG, Frazer KA, Cox DR. Whole-genome patterns of common DNA variation in three human populations. Science (New York, N.Y.). 307: 1072-9. PMID 15718463 DOI: 10.1126/science.1105436  1
2005 Tompa M, Li N, Bailey TL, Church GM, De Moor B, Eskin E, Favorov AV, Frith MC, Fu Y, Kent WJ, Makeev VJ, Mironov AA, Noble WS, Pavesi G, Pesole G, et al. Assessing computational tools for the discovery of transcription factor binding sites. Nature Biotechnology. 23: 137-44. PMID 15637633 DOI: 10.1038/nbt1053  1
2005 Eskin E, Snir S. The homology kernel: A biologically motivated sequence embedding into euclidean space Proceedings of the 2005 Ieee Symposium On Computational Intelligence in Bioinformatics and Computational Biology, Cibcb '05. 2005.  1
2005 Eskin E, Price A, Raphael B, Workman C. Regulatory Genomics - RECOMB 2004 International Workshop, RRG 2004, Revised Selected Papers: Preface Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3318: i.  1
2005 Stolfo SJ, Apap F, Eskin E, Heller K, Hershkop S, Honig A, Svore K. A comparative evaluation of two algorithms for Windows Registry Anomaly Detection Journal of Computer Security. 13: 659-693.  1
2005 Zilberstein CBZ, Eskin E, Yakhini Z. Using expression data to discover RNA and DNA regulatory sequence motifs Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science). 3318: 65-78.  1
2005 Eskin E, Price A, Raphael B, Workman C. Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science): Preface Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science). 3318: i.  1
2005 O'Rourke S, Chechik G, Friedman R, Eskin E. Discrete profile alignment via constrained information bottleneck Advances in Neural Information Processing Systems 1
2004 Price AL, Eskin E, Pevzner PA. Whole-genome analysis of Alu repeat elements reveals complex evolutionary history. Genome Research. 14: 2245-52. PMID 15520288 DOI: 10.1101/gr.2693004  1
2004 Eskin E, Agichtein E. Combining text mining and sequence analysis to discover protein functional regions. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 288-99. PMID 14992511  1
2004 Leslie CS, Eskin E, Cohen A, Weston J, Noble WS. Mismatch string kernels for discriminative protein classification. Bioinformatics (Oxford, England). 20: 467-76. PMID 14990442 DOI: 10.1093/bioinformatics/btg431  1
2004 Halperin E, Eskin E. Haplotype reconstruction from genotype data using Imperfect Phylogeny. Bioinformatics (Oxford, England). 20: 1842-9. PMID 14988101 DOI: 10.1093/bioinformatics/bth149  1
2004 Eskin E. From profiles to patterns and back again: A branch and bound algorithm for finding near optimal motif profiles Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 8: 115-124.  1
2004 Smola AJ, Vishwanathan SVN, Eskin E. Laplace propagation Advances in Neural Information Processing Systems 1
2003 Eskin E, Halperin E, Karp RM. Efficient reconstruction of haplotype structure via perfect phylogeny. Journal of Bioinformatics and Computational Biology. 1: 1-20. PMID 15290779  1
2003 Eskin E, Noble WS, Singer Y. Protein family classification using sparse markov transducers. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 10: 187-213. PMID 12804091 DOI: 10.1089/106652703321825964  1
2003 Eskin E, Keich U, Gelfand MS, Pevzner PA. Genome-wide analysis of bacterial promoter regions. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 29-40. PMID 12603015  1
2003 Weston J, Schölkopf B, Eskin E, Leslie C, Noble WS. Dealing with large diagonals in kernel matrices Annals of the Institute of Statistical Mathematics. 55: 391-408. DOI: 10.1023/A:1026338322729  1
2003 Eskin E, Halperin E, Karp RM. Large scale reconstruction of haplotypes from genotype data Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 104-113.  1
2003 Leslie C, Eskin E, Weston J, Noble WS. Mismatch string kernels for SVM protein classification Advances in Neural Information Processing Systems 1
2002 Eskin E, Noble WS, Singer Y. Using substitution matrices to estimate probability distributions for biological sequences. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 9: 775-91. PMID 12614546 DOI: 10.1089/10665270260518263  1
2002 Eskin E, Pevzner PA. Finding composite regulatory patterns in DNA sequences. Bioinformatics (Oxford, England). 18: S354-63. PMID 12169566  1
2002 Leslie C, Eskin E, Noble WS. The spectrum kernel: a string kernel for SVM protein classification. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 564-75. PMID 11928508  1
2002 Apap F, Honig A, Hershkop S, Eskin E, Stolfo S. Detecting malicious software by monitoring anomalous windows registry accesses Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2516: 36-53. DOI: 10.1007/3-540-36084-0_3  1
2002 Bhattacharyya M, Hershkop S, Eskin E. MET: An experimental system for Malicious Email Tracking Proceedings New Security Paradigms Workshop. 3-10.  1
2002 Schölkopf B, Weston J, Eskin E, Leslie C, Noble WS. A kernel approach for learning from almost orthogonal patterns Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2431: 494-511.  1
2002 Schölkopf B, Weston J, Eskin E, Leslie C, Noble WS. A kernel approach for learning from almost orthogonal patterns Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2431: 494-511.  1
2001 Eskin E, Grundy WN, Singer Y. Using mixtures of common ancestors for estimating the probabilities of discrete events in biological sequences. Bioinformatics (Oxford, England). 17: S65-73. PMID 11472994  1
2001 Eskin E, Lee W, Stolfo SJ. Modeling system calls for intrusion detection with dynamic window sizes Proceedings - Darpa Information Survivability Conference and Exposition Ii, Discex 2001. 1: 165-175. DOI: 10.1109/DISCEX.2001.932213  1
2001 Lee W, Stolfo SJ, Chan PK, Eskin E, Fan W, Miller M, Hershkop S, Zhang J. Real time data mining-based intrusion detection Proceedings - Darpa Information Survivability Conference and Exposition Ii, Discex 2001. 1: 89-100. DOI: 10.1109/DISCEX.2001.932195  1
2001 Schultz MG, Eskin E, Zadok E, Stolfo SJ. Data mining methods for detection of new malicious executables Proceedings of the Ieee Computer Society Symposium On Research in Security and Privacy. 38-49.  1
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