Emrah Kostem, Ph.D. - Publications

2013 Computer Science 0201 University of California, Los Angeles, Los Angeles, CA 
bioinformatics; computational biology; machine learning

16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Bein K, Ganguly K, Martin TM, Concel VJ, Brant KA, Di YP, Upadhyay S, Fabisiak JP, Vuga LJ, Kaminski N, Kostem E, Eskin E, Prows DR, Jang AS, Leikauf GD. Genetic Determinants of Ammonia-Induced Acute Lung Injury in Mice. American Journal of Physiology. Lung Cellular and Molecular Physiology. PMID 33050709 DOI: 10.1152/ajplung.00276.2020  0.92
2018 Kang EY, Lee CH, Furlotte NA, Joo JWJ, Kostem E, Zaitlen N, Eskin E, Han B. An Association Mapping Framework To Account for Potential Sex Difference in Genetic Architectures. Genetics. PMID 29752291 DOI: 10.1534/Genetics.117.300501  0.92
2016 Sul JH, Bilow M, Yang WY, Kostem E, Furlotte N, He D, Eskin E. Accounting for Population Structure in Gene-by-Environment Interactions in Genome-Wide Association Studies Using Mixed Models. Plos Genetics. 12: e1005849. PMID 26943367 DOI: 10.1371/Journal.Pgen.1005849  0.92
2014 Amini S, Pushkarev D, Christiansen L, Kostem E, Royce T, Turk C, Pignatelli N, Adey A, Kitzman JO, Vijayan K, Ronaghi M, Shendure J, Gunderson KL, Steemers FJ. Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing. Nature Genetics. 46: 1343-9. PMID 25326703 DOI: 10.1038/Ng.3119  0.92
2014 Hormozdiari F, Kostem E, Kang EY, Pasaniuc B, Eskin E. Identifying causal variants at loci with multiple signals of association. Genetics. 198: 497-508. PMID 25104515 DOI: 10.1534/Genetics.114.167908  0.92
2013 Kostem E, Eskin E. Efficiently identifying significant associations in genome-wide association studies. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 817-30. PMID 24033261 DOI: 10.1089/Cmb.2013.0087  0.92
2013 Leikauf GD, Concel VJ, Bein K, Liu P, Berndt A, Martin TM, Ganguly K, Jang AS, Brant KA, Dopico RA, Upadhyay S, Cario C, Di YP, Vuga LJ, Kostem E, et al. Functional genomic assessment of phosgene-induced acute lung injury in mice. American Journal of Respiratory Cell and Molecular Biology. 49: 368-83. PMID 23590305 DOI: 10.1165/Rcmb.2012-0337Oc  0.92
2013 Kostem E, Eskin E. Improving the accuracy and efficiency of partitioning heritability into the contributions of genomic regions. American Journal of Human Genetics. 92: 558-64. PMID 23561845 DOI: 10.1016/J.Ajhg.2013.03.010  0.92
2013 Parks BW, Nam E, Org E, Kostem E, Norheim F, Hui ST, Pan C, Civelek M, Rau CD, Bennett BJ, Mehrabian M, Ursell LK, He A, Castellani LW, Zinker B, et al. Genetic control of obesity and gut microbiota composition in response to high-fat, high-sucrose diet in mice. Cell Metabolism. 17: 141-52. PMID 23312289 DOI: 10.1016/J.Cmet.2012.12.007  0.92
2012 Ghazalpour A, Rau CD, Farber CR, Bennett BJ, Orozco LD, van Nas A, Pan C, Allayee H, Beaven SW, Civelek M, Davis RC, Drake TA, Friedman RA, Furlotte N, Hui ST, ... ... Kostem E, et al. Hybrid mouse diversity panel: a panel of inbred mouse strains suitable for analysis of complex genetic traits. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 23: 680-92. PMID 22892838 DOI: 10.1007/S00335-012-9411-5  0.92
2012 Bennett BJ, Orozco L, Kostem E, Erbilgin A, Dallinga M, Neuhaus I, Guan B, Wang X, Eskin E, Lusis AJ. High-resolution association mapping of atherosclerosis loci in mice. Arteriosclerosis, Thrombosis, and Vascular Biology. 32: 1790-8. PMID 22723443 DOI: 10.1161/Atvbaha.112.253864  0.92
2011 Farber CR, Bennett BJ, Orozco L, Zou W, Lira A, Kostem E, Kang HM, Furlotte N, Berberyan A, Ghazalpour A, Suwanwela J, Drake TA, Eskin E, Wang QT, Teitelbaum SL, et al. Mouse genome-wide association and systems genetics identify Asxl2 as a regulator of bone mineral density and osteoclastogenesis. Plos Genetics. 7: e1002038. PMID 21490954 DOI: 10.1371/Journal.Pgen.1002038  0.92
2011 Kostem E, Lozano JA, Eskin E. Increasing power of genome-wide association studies by collecting additional single-nucleotide polymorphisms. Genetics. 188: 449-60. PMID 21467568 DOI: 10.1534/Genetics.111.128595  0.92
2010 Kirby A, Kang HM, Wade CM, Cotsapas C, Kostem E, Han B, Furlotte N, Kang EY, Rivas M, Bogue MA, Frazer KA, Johnson FM, Beilharz EJ, Cox DR, Eskin E, et al. Fine mapping in 94 inbred mouse strains using a high-density haplotype resource. Genetics. 185: 1081-95. PMID 20439770 DOI: 10.1534/Genetics.110.115014  0.92
2010 Bennett BJ, Farber CR, Orozco L, Kang HM, Ghazalpour A, Siemers N, Neubauer M, Neuhaus I, Yordanova R, Guan B, Truong A, Yang WP, He A, Kayne P, Gargalovic P, ... ... Kostem E, et al. A high-resolution association mapping panel for the dissection of complex traits in mice. Genome Research. 20: 281-90. PMID 20054062 DOI: 10.1101/Gr.099234.109  0.92
2006 Peters B, Bui HH, Frankild S, Nielson M, Lundegaard C, Kostem E, Basch D, Lamberth K, Harndahl M, Fleri W, Wilson SS, Sidney J, Lund O, Buus S, Sette A. A community resource benchmarking predictions of peptide binding to MHC-I molecules. Plos Computational Biology. 2: e65. PMID 16789818 DOI: 10.1371/Journal.Pcbi.0020065  0.92
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