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Indra N. Sarkar, Ph.D. - Publications

Affiliations: 
2004 Columbia University, New York, NY 
Area:
Microbiology
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Karabachev AD, Martini DJ, Hermel DJ, Solcz D, Richardson ME, Pesaran T, Sarkar IN, Greenblatt MS. Curated multiple sequence alignment for the Adenomatous Polyposis Coli (APC) gene and accuracy of in silico pathogenicity predictions. Plos One. 15: e0233673. PMID 32750050 DOI: 10.1371/Journal.Pone.0233673  0.405
2020 Bhatia K, Tanch J, Chen ES, Sarkar IN. Applying FAIR Principles to Improve Data Searchability of Emergency Department Datasets: A Case Study for HCUP-SEDD. Methods of Information in Medicine. PMID 32535879 DOI: 10.1055/S-0040-1712510  0.301
2019 Schuster J, Superdock M, Agudelo A, Stey P, Padbury J, Sarkar IN, Uzun A. Machine learning approach to literature mining for the genetics of complex diseases. Database : the Journal of Biological Databases and Curation. 2019. PMID 31768545 DOI: 10.1093/Database/Baz124  0.353
2019 Kim IE, Sarkar IN. Racial Representation Disparity of Population-Level Genomic Sequencing Efforts. Studies in Health Technology and Informatics. 264: 974-978. PMID 31438069 DOI: 10.3233/Shti190369  0.334
2016 Sharma V, Holmes JH, Sarkar IN. Identifying Complementary and Alternative Medicine Usage Information from Internet Resources. A Systematic Review. Methods of Information in Medicine. 5. PMID 27352304 DOI: 10.3414/Me15-01-0154  0.307
2015 Romano JD, Tharp WG, Sarkar IN. Adapting simultaneous analysis phylogenomic techniques to study complex disease gene relationships. Journal of Biomedical Informatics. 54: 10-38. PMID 25592479 DOI: 10.1016/J.Jbi.2015.01.002  0.691
2014 Chen ES, Sarkar IN. Mining the electronic health record for disease knowledge. Methods in Molecular Biology (Clifton, N.J.). 1159: 269-86. PMID 24788272 DOI: 10.1007/978-1-4939-0709-0_15  0.329
2013 Sharma V, Sarkar IN. Leveraging concept-based approaches to identify potential phyto-therapies Journal of Biomedical Informatics. 46: 602-614. PMID 23665360 DOI: 10.1016/J.Jbi.2013.04.008  0.301
2013 Sharma V, Sarkar IN. Leveraging biodiversity knowledge for potential phyto-therapeutic applications Journal of the American Medical Informatics Association. 20: 668-679. PMID 23518859 DOI: 10.1136/Amiajnl-2012-001445  0.3
2013 Payne PR, Pressler TR, Sarkar IN, Lussier Y. People, organizational, and leadership factors impacting informatics support for clinical and translational research. Bmc Medical Informatics and Decision Making. 13: 20. PMID 23388243 DOI: 10.1186/1472-6947-13-20  0.302
2012 Perez-Cheeks BA, Planet PJ, Sarkar IN, Clock SA, Xu Q, Figurski DH. The product of tadZ, a new member of the parA/minD superfamily, localizes to a pole in Aggregatibacter actinomycetemcomitans. Molecular Microbiology. 83: 694-711. PMID 22239271 DOI: 10.1111/J.1365-2958.2011.07955.X  0.65
2012 Sarkar IN. A vector space model approach to identify genetically related diseases Journal of the American Medical Informatics Association. 19: 249-254. PMID 22227640 DOI: 10.1136/Amiajnl-2011-000480  0.321
2012 Nabhan AR, Sarkar IN. The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy. Briefings in Bioinformatics. 13: 122-34. PMID 21436145 DOI: 10.1093/Bib/Bbr014  0.347
2011 Kurt Lienau E, DeSalle R, Allard M, Brown EW, Swofford D, Rosenfeld JA, Sarkar IN, Planet PJ. The mega-matrix tree of life: using genome-scale horizontal gene transfer and sequence evolution data as information about the vertical history of life. Cladistics : the International Journal of the Willi Hennig Society. 27: 417-427. PMID 34875790 DOI: 10.1111/j.1096-0031.2010.00337.x  0.619
2011 Bellazzi R, Diomidous M, Sarkar IN, Takabayashi K, Ziegler A, McCray AT. Data analysis and data mining: current issues in biomedical informatics. Methods of Information in Medicine. 50: 536-44. PMID 22146916 DOI: 10.3414/Me11-06-0002  0.34
2011 Scotch M, Sarkar IN, Mei C, Leaman R, Cheung KH, Ortiz P, Singraur A, Gonzalez G. Enhancing phylogeography by improving geographical information from GenBank. Journal of Biomedical Informatics. 44: S44-7. PMID 21723960 DOI: 10.1016/J.Jbi.2011.06.005  0.356
2011 Sarkar IN, Butte AJ, Lussier YA, Tarczy-Hornoch P, Ohno-Machado L. Translational bioinformatics: linking knowledge across biological and clinical realms. Journal of the American Medical Informatics Association : Jamia. 18: 354-7. PMID 21561873 DOI: 10.1136/Amiajnl-2011-000245  0.332
2011 Sarkar IN, Trizna M. The barcode of life data portal: Bridging the biodiversity informatics divide for DNA barcoding Plos One. 6. DOI: 10.1371/Journal.Pone.0014689  0.358
2011 Kvist S, Sarkar IN, Siddall ME. Genome-wide search for leech antiplatelet proteins in the non-blood-feeding leech Helobdella robusta (Rhyncobdellida: Glossiphoniidae) reveals evidence of secreted anticoagulants Invertebrate Biology. 130: 344-350. DOI: 10.1111/J.1744-7410.2011.00238.X  0.384
2011 Kurt Lienau E, DeSalle R, Allard M, Brown EW, Swofford D, Rosenfeld JA, Sarkar IN, Planet PJ. The mega-matrix tree of life: Using genome-scale horizontal gene transfer and sequence evolution data as information about the vertical history of life Cladistics. 27: 417-427. DOI: 10.1111/J.1096-0031.2010.00337.X  0.647
2010 Min GS, Sarkar IN, Siddall ME. Salivary transcriptome of the North American medicinal leech, Macrobdella decora. The Journal of Parasitology. 96: 1211-21. PMID 21158638 DOI: 10.1645/Ge-2496.1  0.376
2010 Kvist S, Sarkar IN, Erséus C. Genetic variation and phylogeny of the cosmopolitan marine genus Tubificoides (Annelida: Clitellata: Naididae: Tubificinae) Molecular Phylogenetics and Evolution. 57: 687-702. PMID 20801225 DOI: 10.1016/J.Ympev.2010.08.018  0.339
2010 Sarkar IN. Biomedical informatics and translational medicine Journal of Translational Medicine. 8. PMID 20187952 DOI: 10.1186/1479-5876-8-22  0.312
2010 Chen ES, Sarkar IN. MeSHing molecular sequences and clinical trials: a feasibility study. Journal of Biomedical Informatics. 43: 442-50. PMID 19850150 DOI: 10.1016/J.Jbi.2009.10.003  0.314
2009 Sarkar IN. Biodiversity Informatics: The emergence of a field Bmc Bioinformatics. 10: S1. PMID 19900296 DOI: 10.1186/1471-2105-10-S14-S1  0.358
2009 Miller H, Norton CN, Sarkar IN. GenBank and PubMed: How connected are they? Bmc Research Notes. 2. DOI: 10.1186/1756-0500-2-101  0.372
2008 Sarkar IN, Planet PJ, Desalle R. caos software for use in character-based DNA barcoding. Molecular Ecology Resources. 8: 1256-9. PMID 21586014 DOI: 10.1111/J.1755-0998.2008.02235.X  0.593
2008 Sarkar IN, Schenk R, Norton CN. Exploring historical trends using taxonomic name metadata Bmc Evolutionary Biology. 8. PMID 18477399 DOI: 10.1186/1471-2148-8-144  0.359
2008 Garcia-España A, Chung PJ, Sarkar IN, Stiner E, Sun TT, Desalle R. Appearance of new tetraspanin genes during vertebrate evolution. Genomics. 91: 326-34. PMID 18291621 DOI: 10.1016/J.Ygeno.2007.12.005  0.349
2008 Sarkar IN, Egan MG, Coruzzi G, Lee EK, DeSalle R. Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics. Bmc Bioinformatics. 9: 103. PMID 18282301 DOI: 10.1186/1471-2105-9-103  0.406
2007 Sarkar IN. Biodiversity informatics: Organizing and linking information across the spectrum of life Briefings in Bioinformatics. 8: 347-357. PMID 17704120 DOI: 10.1093/Bib/Bbm037  0.317
2007 Leary PR, Remsen DP, Norton CN, Patterson DJ, Sarkar IN. uBioRSS: tracking taxonomic literature using RSS. Bioinformatics (Oxford, England). 23: 1434-6. PMID 17392332 DOI: 10.1093/Bioinformatics/Btm109  0.325
2007 Perkins SL, Sarkar IN, Carter R. The phylogeny of rodent malaria parasites: simultaneous analysis across three genomes. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 7: 74-83. PMID 16765106 DOI: 10.1016/J.Meegid.2006.04.005  0.368
2006 Chiu JC, Lee EK, Egan MG, Sarkar IN, Coruzzi GM, DeSalle R. OrthologID: automation of genome-scale ortholog identification within a parsimony framework. Bioinformatics (Oxford, England). 22: 699-707. PMID 16410324 DOI: 10.1093/Bioinformatics/Btk040  0.414
2006 Sarkar IN. Phylogenetics in the modern era Journal of Biomedical Informatics. 39: 3-5. PMID 16386469 DOI: 10.1016/J.Jbi.2005.11.009  0.32
2005 Planet PJ, Sarkar IN. mILD: a tool for constructing and analyzing matrices of pairwise phylogenetic character incongruence tests. Bioinformatics (Oxford, England). 21: 4423-4. PMID 16267088 DOI: 10.1093/Bioinformatics/Bti744  0.614
2005 Cantor MN, Sarkar IN, Bodenreider O, Lussier YA. Genestrace: phenomic knowledge discovery via structured terminology. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 103-14. PMID 15759618  0.304
2005 Koning D, Sarkar IN, Moritz T. TaxonGrab: Extracting Taxonomic Names From Text Biodiversity Informatics. 2. DOI: 10.17161/Bi.V2I0.17  0.331
2004 Rosenfeld JA, Sarkar IN, Planet PJ, Figurski DH, DeSalle R. ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms. Bioinformatics (Oxford, England). 20: 3462-5. PMID 15271781 DOI: 10.1093/Bioinformatics/Bth427  0.706
2002 Sarkar IN, Planet PJ, Bael TE, Stanley SE, Siddall M, DeSalle R, Figurski DH. Characteristic attributes in cancer microarrays. Journal of Biomedical Informatics. 35: 111-22. PMID 12474425 DOI: 10.1016/S1532-0464(02)00504-X  0.726
2002 Sarkar IN, Thornton JW, Planet PJ, Figurski DH, Schierwater B, DeSalle R. An automated phylogenetic key for classifying homeoboxes. Molecular Phylogenetics and Evolution. 24: 388-99. PMID 12220982 DOI: 10.1016/S1055-7903(02)00259-2  0.709
2001 Planet PJ, DeSalle R, Siddall M, Bael T, Sarkar IN, Stanley SE. Systematic analysis of DNA microarray data: Ordering and interpreting patterns of gene expression Genome Research. 11: 1149-1155. PMID 11435396 DOI: 10.1101/Gr.187601  0.64
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