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Yang Shen - Publications

Affiliations: 
University of Chicago, Chicago, IL 
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19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Bai Y, Liu J, Liu S, Xia Z, Chen Y, Liang G, Shen Y. Experimental Comparative Investigation of Hot Solvent/Steam-Assisted Gravity Drainage in Oil Sand Reservoirs. Acs Omega. 6: 22333-22343. PMID 34497922 DOI: 10.1021/acsomega.1c03090  0.321
2021 Taftaf R, Liu X, Singh S, Jia Y, Dashzeveg NK, Hoffmann AD, El-Shennawy L, Ramos EK, Adorno-Cruz V, Schuster EJ, Scholten D, Patel D, Zhang Y, Davis AA, Reduzzi C, ... ... Shen Y, et al. ICAM1 initiates CTC cluster formation and trans-endothelial migration in lung metastasis of breast cancer. Nature Communications. 12: 4867. PMID 34381029 DOI: 10.1038/s41467-021-25189-z  0.301
2019 Chen Y, Shen Y, Lin P, Tong D, Zhao Y, Allesina S, Shen X, Wu CI. Gene regulatory network stabilized by pervasive weak repressions: microRNA functions revealed by the May-Wigner theory. National Science Review. 6: 1176-1188. PMID 34691996 DOI: 10.1093/nsr/nwz076  0.655
2017 Wang Y, Shen Y, Dai Q, Yang Q, Zhang Y, Wang X, Xie W, Luo Z, Lin C. A permissive chromatin state regulated by ZFP281-AFF3 in controlling the imprinted Meg3 polycistron. Nucleic Acids Research. 45: 1177-1185. PMID 28180295 DOI: 10.1093/Nar/Gkw1051  0.312
2015 Zhang X, Zhu Y, Liu X, Hong X, Xu Y, Zhu P, Shen Y, Wu H, Ji Y, Wen X, Zhang C, Zhao Q, Wang Y, Lu J, Guo H. Plant biology. Suppression of endogenous gene silencing by bidirectional cytoplasmic RNA decay in Arabidopsis. Science (New York, N.Y.). 348: 120-3. PMID 25838384 DOI: 10.1126/Science.Aaa2618  0.411
2014 Lyu Y, Shen Y, Li H, Chen Y, Guo L, Zhao Y, Hungate E, Shi S, Wu CI, Tang T. New microRNAs in Drosophila--birth, death and cycles of adaptive evolution. Plos Genetics. 10: e1004096. PMID 24465220 DOI: 10.1371/Journal.Pgen.1004096  0.68
2013 Xu J, Zhang R, Shen Y, Liu G, Lu X, Wu CI. The evolution of evolvability in microRNA target sites in vertebrates. Genome Research. 23: 1810-6. PMID 24077390 DOI: 10.1101/Gr.148916.112  0.613
2012 Wen M, Shen Y, Shi S, Tang T. miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments. Bmc Bioinformatics. 13: 140. PMID 22720726 DOI: 10.1186/1471-2105-13-140  0.436
2011 Shen Y, Lv Y, Huang L, Liu W, Wen M, Tang T, Zhang R, Hungate E, Shi S, Wu CI. Testing hypotheses on the rate of molecular evolution in relation to gene expression using microRNAs. Proceedings of the National Academy of Sciences of the United States of America. 108: 15942-7. PMID 21911382 DOI: 10.1073/Pnas.1110098108  0.731
2011 Tao Y, Ruan J, Yeh SH, Lu X, Wang Y, Zhai W, Cai J, Ling S, Gong Q, Chong Z, Qu Z, Li Q, Liu J, Yang J, Zheng C, ... ... Shen Y, et al. Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data. Proceedings of the National Academy of Sciences of the United States of America. 108: 12042-7. PMID 21730188 DOI: 10.1073/Pnas.1108715108  0.441
2010 Lu J, Shen Y, Carthew RW, Wang SM, Wu CI. Reply to evolutionary flux of canonical microRNAs and mirtrons in Drosophila. Nature Genetics. 42: 9-10. PMID 25067898 DOI: 10.1038/Ng0110-9  0.616
2010 Tang T, Kumar S, Shen Y, Lu J, Wu ML, Shi S, Li WH, Wu CI. Adverse interactions between micro-RNAs and target genes from different species. Proceedings of the National Academy of Sciences of the United States of America. 107: 12935-40. PMID 20615957 DOI: 10.1073/Pnas.1007591107  0.666
2010 Lu X, Shapiro JA, Ting CT, Li Y, Li C, Xu J, Huang H, Cheng YJ, Greenberg AJ, Li SH, Wu ML, Shen Y, Wu CI. Genome-wide misexpression of X-linked versus autosomal genes associated with hybrid male sterility. Genome Research. 20: 1097-102. PMID 20511493 DOI: 10.1101/Gr.076620.108  0.65
2009 Wu CI, Shen Y, Tang T. Evolution under canalization and the dual roles of microRNAs: a hypothesis. Genome Research. 19: 734-43. PMID 19411598 DOI: 10.1101/Gr.084640.108  0.661
2008 Lu J, Fu Y, Kumar S, Shen Y, Zeng K, Xu A, Carthew R, Wu CI. Adaptive evolution of newly emerged micro-RNA genes in Drosophila. Molecular Biology and Evolution. 25: 929-38. PMID 18296702 DOI: 10.1093/Molbev/Msn040  0.693
2008 Lu J, Shen Y, Wu Q, Kumar S, He B, Shi S, Carthew RW, Wang SM, Wu CI. The birth and death of microRNA genes in Drosophila. Nature Genetics. 40: 351-5. PMID 18278047 DOI: 10.1038/Ng.73  0.701
2006 Tang T, Lu J, Huang J, He J, McCouch SR, Shen Y, Kai Z, Purugganan MD, Shi S, Wu CI. Genomic variation in rice: genesis of highly polymorphic linkage blocks during domestication. Plos Genetics. 2: e199. PMID 17112320 DOI: 10.1371/Journal.Pgen.0020199  0.519
2005 Dong M, Fu Y, Yu C, Su J, Huang S, Wu X, Wei J, Yuan S, Shen Y, Xu A. Identification and characterisation of a homolog of an activation gene for the recombination activating gene 1 (RAG 1) in amphioxus. Fish & Shellfish Immunology. 19: 165-74. PMID 15752655 DOI: 10.1016/J.Fsi.2004.11.001  0.304
2005 Yu C, Dong M, Wu X, Li S, Huang S, Su J, Wei J, Shen Y, Mou C, Xie X, Lin J, Yuan S, Yu X, Yu Y, Du J, et al. Genes "waiting" for recruitment by the adaptive immune system: the insights from amphioxus. Journal of Immunology (Baltimore, Md. : 1950). 174: 3493-500. PMID 15749885 DOI: 10.4049/Jimmunol.174.6.3493  0.316
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