| Year |
Citation |
Score |
| 2023 |
Singhal K, Azizi S, Tu T, Mahdavi SS, Wei J, Chung HW, Scales N, Tanwani A, Cole-Lewis H, Pfohl S, Payne P, Seneviratne M, Gamble P, Kelly C, Babiker A, ... ... Demner-Fushman D, et al. Large language models encode clinical knowledge. Nature. PMID 37438534 DOI: 10.1038/s41586-023-06291-2 |
0.302 |
|
| 2023 |
Attal K, Ondov B, Demner-Fushman D. A dataset for plain language adaptation of biomedical abstracts. Scientific Data. 10: 8. PMID 36599892 DOI: 10.1038/s41597-022-01920-3 |
0.3 |
|
| 2020 |
Savery M, Abacha AB, Gayen S, Demner-Fushman D. Question-driven summarization of answers to consumer health questions. Scientific Data. 7: 322. PMID 33009402 DOI: 10.1038/s41597-020-00667-z |
0.307 |
|
| 2020 |
Datta S, Si Y, Rodriguez L, Shooshan SE, Demner-Fushman D, Roberts K. Understanding Spatial Language in Radiology: Representation Framework, Annotation, and Spatial Relation Extraction from Chest X-ray Reports using Deep Learning. Journal of Biomedical Informatics. 103473. PMID 32562898 DOI: 10.1016/J.Jbi.2020.103473 |
0.317 |
|
| 2020 |
Roberts K, Alam T, Bedrick S, Demner-Fushman D, Lo K, Soboroff I, Voorhees E, Wang LL, Hersh WR. TREC-COVID: Rationale and Structure of an Information Retrieval Shared Task for COVID-19. Journal of the American Medical Informatics Association : Jamia. PMID 32365190 DOI: 10.1093/Jamia/Ocaa091 |
0.342 |
|
| 2019 |
Ben Abacha A, Demner-Fushman D. A question-entailment approach to question answering. Bmc Bioinformatics. 20: 511. PMID 31640539 DOI: 10.1186/S12859-019-3119-4 |
0.399 |
|
| 2019 |
Demner-Fushman D, Mrabet Y, Ben Abacha A. Consumer health information and question answering: helping consumers find answers to their health-related information needs. Journal of the American Medical Informatics Association : Jamia. PMID 31592532 DOI: 10.1093/Jamia/Ocz152 |
0.338 |
|
| 2019 |
Abacha AB, Mrabet Y, Sharp M, Goodwin TR, Shooshan SE, Demner-Fushman D. Bridging the Gap Between Consumers' Medication Questions and Trusted Answers. Studies in Health Technology and Informatics. 264: 25-29. PMID 31437878 DOI: 10.3233/Shti190176 |
0.36 |
|
| 2018 |
Lau JJ, Gayen S, Ben Abacha A, Demner-Fushman D. A dataset of clinically generated visual questions and answers about radiology images. Scientific Data. 5: 180251. PMID 31745191 DOI: 10.1038/sdata.2018.251 |
0.328 |
|
| 2018 |
Lau JJ, Gayen S, Ben Abacha A, Demner-Fushman D. A dataset of clinically generated visual questions and answers about radiology images. Scientific Data. 5: 180251. PMID 30457565 DOI: 10.1038/Sdata.2018.251 |
0.429 |
|
| 2018 |
Kilicoglu H, Ben Abacha A, Mrabet Y, Shooshan SE, Rodriguez L, Masterton K, Demner-Fushman D. Semantic annotation of consumer health questions. Bmc Bioinformatics. 19: 34. PMID 29409442 DOI: 10.1186/S12859-018-2045-1 |
0.414 |
|
| 2018 |
Demner-Fushman D, Shooshan SE, Rodriguez L, Aronson AR, Lang F, Rogers W, Roberts K, Tonning J. A dataset of 200 structured product labels annotated for adverse drug reactions. Scientific Data. 5: 180001. PMID 29381145 DOI: 10.1038/Sdata.2018.1 |
0.32 |
|
| 2017 |
Cohen T, Roberts K, Gururaj AE, Chen X, Pournejati S, Alter G, Hersh WR, Demner-Fushman D, Ohno-Machado L, Xu H. A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge. Database : the Journal of Biological Databases and Curation. 2017. PMID 29220453 DOI: 10.1093/Database/Bax061 |
0.348 |
|
| 2017 |
Mork J, Aronson A, Demner-Fushman D. 12 years on - Is the NLM medical text indexer still useful and relevant? Journal of Biomedical Semantics. 8: 8. PMID 28231809 DOI: 10.1186/S13326-017-0113-5 |
0.348 |
|
| 2017 |
Demner-Fushman D, Rogers WJ, Aronson AR. MetaMap Lite: an evaluation of a new Java implementation of MetaMap. Journal of the American Medical Informatics Association : Jamia. PMID 28130331 DOI: 10.1093/Jamia/Ocw177 |
0.411 |
|
| 2017 |
Roberts K, Gururaj AE, Chen X, Pournejati S, Hersh WR, Demner-Fushman D, Ohno-Machado L, Cohen T, Xu H. Information retrieval for biomedical datasets: the 2016 bioCADDIE dataset retrieval challenge Database. 2017. DOI: 10.1093/Database/Bax068 |
0.366 |
|
| 2016 |
Roberts K, Demner-Fushman D. Annotating Logical Forms for EHR Questions. Lrec ... International Conference On Language Resources & Evaluation : [Proceedings]. International Conference On Language Resources and Evaluation. 2016: 3772-3778. PMID 28503677 |
0.325 |
|
| 2016 |
Kilicoglu H, Demner-Fushman D. Bio-SCoRes: A Smorgasbord Architecture for Coreference Resolution in Biomedical Text. Plos One. 11: e0148538. PMID 26934708 DOI: 10.1371/Journal.Pone.0148538 |
0.415 |
|
| 2016 |
Xue Z, Antani S, Long LR, Demner-Fushman D, Thoma GR. Improving face image extraction by using deep learning technique Proceedings of Spie. 9789. DOI: 10.1117/12.2216278 |
0.334 |
|
| 2016 |
Roberts K, Simpson M, Demner-Fushman D, Voorhees E, Hersh W. State-of-the-art in biomedical literature retrieval for clinical cases: a survey of the TREC 2014 CDS track Information Retrieval. 19: 113-148. DOI: 10.1007/S10791-015-9259-X |
0.374 |
|
| 2015 |
Rahman MM, Antani SK, Demner-Fushman D, Thoma GR. Biomedical image representation approach using visualness and spatial information in a concept feature space for interactive region-of-interest-based retrieval. Journal of Medical Imaging (Bellingham, Wash.). 2: 046502. PMID 26730398 DOI: 10.1117/1.Jmi.2.4.046502 |
0.383 |
|
| 2015 |
Roberts K, Demner-Fushman D. Toward a Natural Language Interface for EHR Questions. Amia Joint Summits On Translational Science Proceedings Amia Summit On Translational Science. 2015: 157-61. PMID 26306260 |
0.306 |
|
| 2015 |
Demner-Fushman D, Kohli MD, Rosenman MB, Shooshan SE, Rodriguez L, Antani S, Thoma GR, McDonald CJ. Preparing a collection of radiology examinations for distribution and retrieval. Journal of the American Medical Informatics Association : Jamia. PMID 26133894 DOI: 10.1093/Jamia/Ocv080 |
0.372 |
|
| 2015 |
Roberts K, Shooshan SE, Rodriguez L, Abhyankar S, Kilicoglu H, Demner-Fushman D. The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs. Journal of Biomedical Informatics. 58: S111-9. PMID 26122527 DOI: 10.1016/J.Jbi.2015.06.010 |
0.362 |
|
| 2015 |
Demner-Fushman D, Antani S, Kalpathy-Cramer J, Müller H. A decade of community-wide efforts in advancing medical image understanding and retrieval. Computerized Medical Imaging and Graphics : the Official Journal of the Computerized Medical Imaging Society. 39: 1-2. PMID 25572585 DOI: 10.1016/J.Compmedimag.2014.12.002 |
0.327 |
|
| 2015 |
Simpson MS, You D, Rahman MM, Xue Z, Demner-Fushman D, Antani S, Thoma G. Literature-based biomedical image classification and retrieval. Computerized Medical Imaging and Graphics : the Official Journal of the Computerized Medical Imaging Society. 39: 3-13. PMID 25016956 DOI: 10.1016/J.Compmedimag.2014.06.006 |
0.409 |
|
| 2015 |
Kalpathy-Cramer J, de Herrera AG, Demner-Fushman D, Antani S, Bedrick S, Müller H. Evaluating performance of biomedical image retrieval systems--an overview of the medical image retrieval task at ImageCLEF 2004-2013. Computerized Medical Imaging and Graphics : the Official Journal of the Computerized Medical Imaging Society. 39: 55-61. PMID 24746250 DOI: 10.1016/J.Compmedimag.2014.03.004 |
0.41 |
|
| 2015 |
Rahman MM, Antani SK, Demner-Fushman D, Thoma GR. A concept-based interactive biomedical image retrieval approach using visualness and spatial information Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9418. DOI: 10.1117/12.2081456 |
0.381 |
|
| 2015 |
Xue Z, You D, Chachra S, Antani S, Long LR, Demner-Fushman D, Thoma GR. Extraction of endoscopic images for biomedical figure classification Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9418. DOI: 10.1117/12.2081033 |
0.351 |
|
| 2014 |
Bekhuis T, Tseytlin E, Mitchell KJ, Demner-Fushman D. Feature engineering and a proposed decision-support system for systematic reviewers of medical evidence. Plos One. 9: e86277. PMID 24475099 DOI: 10.1371/Journal.Pone.0086277 |
0.353 |
|
| 2014 |
Xue Z, You D, Antani S, Long LR, Demner-Fushman D, Thoma GR. Classification of visual signs in abdominal CT image figures in biomedical literature Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9039. DOI: 10.1117/12.2043045 |
0.379 |
|
| 2014 |
You D, Antani S, Demner-Fushman D, Thoma GR. Does figure-text improve biomedical article retrieval? A pilot study Proceedings - Ieee Symposium On Computer-Based Medical Systems. 471-472. DOI: 10.1109/CBMS.2014.95 |
0.329 |
|
| 2014 |
Rahman MM, You D, Simpson MS, Antani SK, Demner-Fushman D, Thoma GR. Interactive cross and multimodal biomedical image retrieval based on automatic region-of-interest (ROI) identification and classification International Journal of Multimedia Information Retrieval. 3: 131-146. DOI: 10.1007/S13735-014-0057-9 |
0.433 |
|
| 2014 |
Simpson MS, Demner-Fushman D, Antani SK, Thoma GR. Multimodal biomedical image indexing and retrieval using descriptive text and global feature mapping Information Retrieval. 17: 229-264. DOI: 10.1007/S10791-013-9235-2 |
0.43 |
|
| 2013 |
Fung KW, Jao CS, Demner-Fushman D. Extracting drug indication information from structured product labels using natural language processing. Journal of the American Medical Informatics Association : Jamia. 20: 482-8. PMID 23475786 DOI: 10.1136/Amiajnl-2012-001291 |
0.313 |
|
| 2013 |
You D, Rahman MM, Antani S, Demner-Fushman D, Thoma GR. Text- and content-based biomedical image modality classiffcation Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8674. DOI: 10.1117/12.2007932 |
0.398 |
|
| 2013 |
Rahman MM, You D, Simpson MS, Antani SK, Demner-Fushman D, Thoma GR. Multimodal biomedical image retrieval using hierarchical classification and modality fusion International Journal of Multimedia Information Retrieval. 2: 159-173. DOI: 10.1007/S13735-013-0038-4 |
0.432 |
|
| 2013 |
Apostolova E, You D, Xue Z, Antani S, Demner-Fushman D, Thoma GR. Image retrieval from scientific publications: Text and image content processing to separate multipanel figures Journal of the American Society For Information Science and Technology. 64: 893-908. DOI: 10.1002/Asi.22810 |
0.402 |
|
| 2012 |
Demner-Fushman D, Antani S, Simpson M, Thoma GR. Design and Development of a Multimodal Biomedical Information Retrieval System Journal of Computing Science and Engineering. 6: 168-177. DOI: 10.5626/Jcse.2012.6.2.168 |
0.466 |
|
| 2012 |
M̈uller H, Kalpathy-Cramer J, Demner-Fushman D, Antani S. Creating a classification of image types in the medical literature for visual categorization Proceedings of Spie - the International Society For Optical Engineering. 8425. DOI: 10.1117/12.911186 |
0.402 |
|
| 2011 |
Stanley RJ, De S, Demner-Fushman D, Antani S, Thoma GR. An image feature-based approach to automatically find images for application to clinical decision support. Computerized Medical Imaging and Graphics : the Official Journal of the Computerized Medical Imaging Society. 35: 365-72. PMID 21144707 DOI: 10.1016/J.Compmedimag.2010.11.008 |
0.407 |
|
| 2011 |
Kim E, Antani S, Huang X, Long LR, Demner-Fushman D. Using relevant regions in image search and query refinement for medical CBIR Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7967. DOI: 10.1117/12.878192 |
0.42 |
|
| 2011 |
You D, Antani S, Demner-Fushman D, Rahman MM, Govindaraju V, Thoma GR. Automatic identification of ROI in figure images toward improving hybrid (text and image) biomedical document retrieval Proceedings of Spie - the International Society For Optical Engineering. 7874. DOI: 10.1117/12.873434 |
0.319 |
|
| 2011 |
Simpson M, Rahman MM, Phadnis S, Apostolova E, Demner-Fushman D, Antani S, Thoma G. Text- And content-based approaches to image modality classification and retrieval for the image CLEF 2011 medical retrieval track Ceur Workshop Proceedings. 1177. |
0.324 |
|
| 2010 |
Simpson MS, Demner-Fushman D, Thoma GR. Evaluating the Importance of Image-related Text for Ad-hoc and Case-based Biomedical Article Retrieval. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2010: 752-6. PMID 21347079 |
0.319 |
|
| 2010 |
Mork JG, Bodenreider O, Demner-Fushman D, Dogan RI, Lang FM, Lu Z, Névéol A, Peters L, Shooshan SE, Aronson AR. Extracting Rx information from clinical narrative. Journal of the American Medical Informatics Association : Jamia. 17: 536-9. PMID 20819859 DOI: 10.1136/Jamia.2010.003970 |
0.356 |
|
| 2010 |
Thoma GR, Ford G, Antani S, Demner-Fushman D, Chung M, Simpson M. Interactive Publication: The document as a research tool. Web Semantics (Online). 8: 145-150. PMID 20657757 DOI: 10.1016/J.Websem.2010.04.001 |
0.361 |
|
| 2010 |
Demner-Fushman D, Mork JG, Shooshan SE, Aronson AR. UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text. Journal of Biomedical Informatics. 43: 587-94. PMID 20152935 DOI: 10.1016/J.Jbi.2010.02.005 |
0.43 |
|
| 2010 |
You D, Antani S, Demner-Fushman D, Rahman MM, Govindaraju V, Thoma GR. Biomedical article retrieval using multimodal features and image annotations in region-based CBIR Proceedings of Spie - the International Society For Optical Engineering. 7534. DOI: 10.1117/12.838973 |
0.34 |
|
| 2010 |
Rahman MM, Antani SK, Long RL, Demner-Fushman D, Thoma GR. Multi-modal query expansion based on local analysis for medical image retrieval Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5853: 110-119. DOI: 10.1007/978-3-642-11769-5_11 |
0.329 |
|
| 2009 |
Overby CL, Tarczy-Hornoch P, Demner-Fushman D. The potential for automated question answering in the context of genomic medicine: an assessment of existing resources and properties of answers. Bmc Bioinformatics. 10: S8. PMID 19761578 DOI: 10.1186/1471-2105-10-S9-S8 |
0.397 |
|
| 2009 |
Demner-Fushman D, Chapman WW, McDonald CJ. What can natural language processing do for clinical decision support? Journal of Biomedical Informatics. 42: 760-72. PMID 19683066 DOI: 10.1016/J.Jbi.2009.08.007 |
0.353 |
|
| 2009 |
Demner-Fushman D, Antani S, Simpson M, Thoma GR. Annotation and retrieval of clinically relevant images. International Journal of Medical Informatics. 78: e59-67. PMID 19546026 DOI: 10.1016/J.Ijmedinf.2009.05.003 |
0.413 |
|
| 2009 |
Fiszman M, Demner-Fushman D, Kilicoglu H, Rindflesch TC. Automatic summarization of MEDLINE citations for evidence-based medical treatment: a topic-oriented evaluation. Journal of Biomedical Informatics. 42: 801-13. PMID 19022398 DOI: 10.1016/J.Jbi.2008.10.002 |
0.396 |
|
| 2009 |
Kilicoglu H, Demner-Fushman D, Rindflesch TC, Wilczynski NL, Haynes RB. Towards automatic recognition of scientifically rigorous clinical research evidence. Journal of the American Medical Informatics Association : Jamia. 16: 25-31. PMID 18952929 DOI: 10.1197/Jamia.M2996 |
0.392 |
|
| 2009 |
You D, Apostolova E, Antani S, Demner-Fushman D, Thoma GR. Figure content analysis for improved biomedical article retrieval Proceedings of Spie - the International Society For Optical Engineering. 7247. DOI: 10.1117/12.805976 |
0.3 |
|
| 2007 |
Ahlers CB, Fiszman M, Demner-Fushman D, Lang FM, Rindflesch TC. Extracting semantic predications from Medline citations for pharmacogenomics. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 209-20. PMID 17990493 |
0.321 |
|
| 2007 |
Zweigenbaum P, Demner-Fushman D, Yu H, Cohen KB. Frontiers of biomedical text mining: current progress. Briefings in Bioinformatics. 8: 358-75. PMID 17977867 DOI: 10.1093/Bib/Bbm045 |
0.354 |
|
| 2007 |
Hauser SE, Demner-Fushman D, Jacobs JL, Humphrey SM, Ford G, Thoma GR. Using wireless handheld computers to seek information at the point of care: an evaluation by clinicians. Journal of the American Medical Informatics Association : Jamia. 14: 807-15. PMID 17712085 DOI: 10.1197/Jamia.M2424 |
0.306 |
|
| 2007 |
Ide NC, Loane RF, Demner-Fushman D. Essie: a concept-based search engine for structured biomedical text. Journal of the American Medical Informatics Association : Jamia. 14: 253-63. PMID 17329729 DOI: 10.1197/Jamia.M2233 |
0.383 |
|
| 2007 |
Demner-Fushman D, Lin J. Answering clinical questions with knowledge-based and statistical techniques Computational Linguistics. 33: 63-103. DOI: 10.1162/Coli.2007.33.1.63 |
0.43 |
|
| 2007 |
Zweigenbaum P, Demner-Fushman D. Advanced literature-mining tools Bioinformatics: Tools and Applications. 347-380. DOI: 10.1007/978-0-387-92738-1_17 |
0.326 |
|
| 2006 |
Humphrey SM, Rogers WJ, Kilicoglu H, Demner-Fushman D, Rindflesch TC. Word Sense Disambiguation by Selecting the Best Semantic Type Based on Journal Descriptor Indexing: Preliminary Experiment. Journal of the American Society For Information Science and Technology : Jasist. 57: 96-113. PMID 19890434 DOI: 10.1002/Asi.V57:1 |
0.337 |
|
| 2006 |
Demner-Fushman D, Few B, Hauser SE, Thoma G. Automatically identifying health outcome information in MEDLINE records. Journal of the American Medical Informatics Association : Jamia. 13: 52-60. PMID 16221937 DOI: 10.1197/Jamia.M1911 |
0.303 |
|
| 2006 |
Lin J, Demner-Fushman D. Methods for automatically evaluating answers to complex questions Information Retrieval. 9: 565-587. DOI: 10.1007/S10791-006-9003-7 |
0.361 |
|
| 2005 |
Lin J, Abels E, Demner-Fushman D, Oard DW, Wu P, Wu Y. A menagerie of tracks at maryland: HARD, enterprise, QA, and genomics, oh my! Nist Special Publication. |
0.436 |
|
| 2003 |
He D, Oard DW, Wang J, Luo J, Demner-Fushman D, Darwish K, Resnik P, Khudanpur S, Nossal M, Subotin M, Leuski A. Making MIRACLEs: Interactive translingual search for Cebuano and Hindi Acm Transactions On Asian Language Information Processing. 2: 219-244. DOI: 10.1145/979872.979876 |
0.643 |
|
| 2003 |
Demner-Fushman D, Oard DW. The effect of bilingual term list size on dictionary-based cross-language information retrieval Proceedings of the 36th Annual Hawaii International Conference On System Sciences, Hicss 2003. DOI: 10.1109/HICSS.2003.1174250 |
0.567 |
|
| 2002 |
Oard DW, Demner-Fushman D, Hajič J, Ramabhadran B, Gustman S, Byrne WJ, Soergel D, Dorr B, Resnik P, Picheny M. Cross-language access to recorded speech in the MALACH project Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2448: 57-64. |
0.541 |
|
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