| Year |
Citation |
Score |
| 2022 |
Geng B, Liu S, Chen Y, Wu Y, Wang Y, Zhou X, Li H, Li M, Yang S. A plasmid-free mutant strain reducing reactive oxygen species for efficient bioethanol production using industrial effluent of xylose mother liquor. Frontiers in Bioengineering and Biotechnology. 10: 1110513. PMID 36619397 DOI: 10.3389/fbioe.2022.1110513 |
0.306 |
|
| 2020 |
Li R, Jin M, Du J, Li M, Chen S, Yang S. The Magnesium Concentration in Yeast Extracts Is a Major Determinant Affecting Ethanol Fermentation Performance of . Frontiers in Bioengineering and Biotechnology. 8: 957. PMID 32984271 DOI: 10.3389/Fbioe.2020.00957 |
0.335 |
|
| 2020 |
Yang Q, Yang Y, Tang Y, Wang X, Chen Y, Shen W, Zhan Y, Gao J, Wu B, He M, Chen S, Yang S. Development and characterization of acidic-pH-tolerant mutants of through adaptation and next-generation sequencing-based genome resequencing and RNA-Seq. Biotechnology For Biofuels. 13: 144. PMID 32817760 DOI: 10.1186/S13068-020-01781-1 |
0.313 |
|
| 2020 |
Yang Y, Qiu M, Yang Q, Wang Y, Wei H, Yang S. Connecting Microbial Genotype with Phenotype in the Omics Era. Methods in Molecular Biology (Clifton, N.J.). 2096: 217-233. PMID 32720157 DOI: 10.1007/978-1-0716-0195-2_16 |
0.364 |
|
| 2020 |
Wang L, Chen L, Yang S, Tan X. Photosynthetic Conversion of Carbon Dioxide to Oleochemicals by Cyanobacteria: Recent Advances and Future Perspectives. Frontiers in Microbiology. 11: 634. PMID 32362881 DOI: 10.3389/Fmicb.2020.00634 |
0.32 |
|
| 2020 |
Han R, Haning K, Gonzalez-Rivera JC, Yang Y, Li R, Cho SH, Huang J, Simonsen BA, Yang S, Contreras LM. Multiple Small RNAs Interact to Co-regulate Ethanol Tolerance in . Frontiers in Bioengineering and Biotechnology. 8: 155. PMID 32195236 DOI: 10.3389/Fbioe.2020.00155 |
0.325 |
|
| 2020 |
Yang S, Franden MA, Wang X, Chou YC, Hu Y, Brown SD, Pienkos PT, Zhang M. Transcriptomic Profiles of 8b to Furfural Acute and Long-Term Stress in Both Glucose and Xylose Conditions. Frontiers in Microbiology. 11: 13. PMID 32038596 DOI: 10.3389/Fmicb.2020.00013 |
0.337 |
|
| 2020 |
Qiu M, Shen W, Yan X, He Q, Cai D, Chen S, Wei H, Knoshaug EP, Zhang M, Himmel ME, Yang S. Metabolic engineering of for anaerobic isobutanol production. Biotechnology For Biofuels. 13: 15. PMID 31998408 DOI: 10.1186/S13068-020-1654-X |
0.3 |
|
| 2019 |
Zheng Y, Han J, Wang B, Hu X, Li R, Shen W, Ma X, Ma L, Yi L, Yang S, Peng W. Characterization and repurposing of the endogenous Type I-F CRISPR-Cas system of Zymomonas mobilis for genome engineering. Nucleic Acids Research. PMID 31647102 DOI: 10.1093/Nar/Gkz940 |
0.325 |
|
| 2019 |
Yang Y, Rong Z, Song H, Yang X, Li M, Yang S. Identification and characterization of ethanol inducible promoters of Zymomonas mobilis based on omics data and dual reporter-gene system. Biotechnology and Applied Biochemistry. PMID 31626362 DOI: 10.1002/Bab.1838 |
0.368 |
|
| 2019 |
Shen W, Zhang J, Geng B, Qiu M, Hu M, Yang Q, Bao W, Xiao Y, Zheng Y, Peng W, Zhang G, Ma L, Yang S. Establishment and application of a CRISPR-Cas12a assisted genome-editing system in Zymomonas mobilis. Microbial Cell Factories. 18: 162. PMID 31581942 DOI: 10.1186/S12934-019-1219-5 |
0.323 |
|
| 2019 |
Yi X, Gao Q, Zhang L, Wang X, He Y, Hu F, Zhang J, Zou G, Yang S, Zhou Z, Bao J. Heterozygous diploid structure of ZN1 contributes efficient biodetoxification on solid pretreated corn stover. Biotechnology For Biofuels. 12: 126. PMID 31139256 DOI: 10.1186/S13068-019-1466-Z |
0.317 |
|
| 2019 |
Li X, He Y, Zhang L, Xu Z, Ben H, Gaffrey MJ, Yang Y, Yang S, Yuan JS, Qian WJ, Yang B. Discovery of potential pathways for biological conversion of poplar wood into lipids by co-fermentation of strains. Biotechnology For Biofuels. 12: 60. PMID 30923568 DOI: 10.1186/S13068-019-1395-X |
0.332 |
|
| 2019 |
Yang Y, Shen W, Huang J, Li R, Xiao Y, Wei H, Chou YC, Zhang M, Himmel ME, Chen S, Yi L, Ma L, Yang S. Prediction and characterization of promoters and ribosomal binding sites of in system biology era. Biotechnology For Biofuels. 12: 52. PMID 30911332 DOI: 10.1186/S13068-019-1399-6 |
0.333 |
|
| 2019 |
Wei H, Yang Y, Himmel ME, Tucker MP, Ding SY, Yang S, Arora R. Identification and Characterization of Five Cold Stress-Related Rhododendron Dehydrin Genes: Spotlight on a FSK-Type Dehydrin With Multiple F-Segments. Frontiers in Bioengineering and Biotechnology. 7: 30. PMID 30847341 DOI: 10.3389/Fbioe.2019.00030 |
0.315 |
|
| 2019 |
Lu Z, Yang S, Yuan X, Shi Y, Ouyang L, Jiang S, Yi L, Zhang G. CRISPR-assisted multi-dimensional regulation for fine-tuning gene expression in Bacillus subtilis. Nucleic Acids Research. PMID 30767015 DOI: 10.1093/Nar/Gkz072 |
0.377 |
|
| 2019 |
Wu B, Qin H, Yang Y, Duan G, Yang S, Xin F, Zhao C, Shao H, Wang Y, Zhu Q, Tan F, Hu G, He M. Engineered tolerant to acetic acid and low pH via multiplex atmospheric and room temperature plasma mutagenesis. Biotechnology For Biofuels. 12: 10. PMID 30627218 DOI: 10.1186/S13068-018-1348-9 |
0.312 |
|
| 2018 |
He Q, Yang Y, Yang S, Donohoe BS, Van Wychen S, Zhang M, Himmel ME, Knoshaug EP. Oleaginicity of the yeast strain D5A. Biotechnology For Biofuels. 11: 258. PMID 30258492 DOI: 10.1186/S13068-018-1256-Z |
0.326 |
|
| 2018 |
Yang S, Vera JM, Grass J, Savvakis G, Moskvin OV, Yang Y, McIlwain SJ, Lyu Y, Zinonos I, Hebert AS, Coon JJ, Bates DM, Sato TK, Brown SD, Himmel ME, et al. Complete genome sequence and the expression pattern of plasmids of the model ethanologen ZM4 and its xylose-utilizing derivatives 8b and 2032. Biotechnology For Biofuels. 11: 125. PMID 29743953 DOI: 10.1186/S13068-018-1116-X |
0.366 |
|
| 2018 |
Yang S, Franden MA, Yang Q, Chou YC, Zhang M, Pienkos PT. Identification of Inhibitors in Lignocellulosic Slurries and Determination of Their Effect on Hydrocarbon-Producing Microorganisms. Frontiers in Bioengineering and Biotechnology. 6: 23. PMID 29670877 DOI: 10.3389/Fbioe.2018.00023 |
0.301 |
|
| 2018 |
Wang X, He Q, Yang Y, Wang J, Haning K, Hu Y, Wu B, He M, Zhang Y, Bao J, Contreras LM, Yang S. Advances and Prospects in Metabolic Engineering of Zymomonas mobilis. Metabolic Engineering. PMID 29627506 DOI: 10.1016/J.Ymben.2018.04.001 |
0.315 |
|
| 2018 |
Cai D, Hu S, Chen Y, Liu L, Yang S, Ma X, Chen S. Enhanced Production of Poly-γ-glutamic acid by Overexpression of the Global Anaerobic Regulator Fnr in Bacillus licheniformis WX-02. Applied Biochemistry and Biotechnology. PMID 29388009 DOI: 10.1007/S12010-018-2693-7 |
0.342 |
|
| 2018 |
Yang Y, Hu M, Tang Y, Geng B, Qiu M, He Q, Chen S, Wang X, Yang S. Progress and perspective on lignocellulosic hydrolysate inhibitor tolerance improvement in Zymomonas mobilis Bioresources and Bioprocessing. 5: 1-12. DOI: 10.1186/S40643-018-0193-9 |
0.36 |
|
| 2017 |
Cho SH, Haning K, Shen W, Blome C, Li R, Yang S, Contreras LM. Identification and Characterization of 5' Untranslated Regions (5'UTRs) in Zymomonas mobilis as Regulatory Biological Parts. Frontiers in Microbiology. 8: 2432. PMID 29375488 DOI: 10.3389/Fmicb.2017.02432 |
0.405 |
|
| 2017 |
Xu Q, Knoshaug EP, Wang W, Alahuhta M, Baker JO, Yang S, Vander Wall T, Decker SR, Himmel ME, Zhang M, Wei H. Expression and secretion of fungal endoglucanase II and chimeric cellobiohydrolase I in the oleaginous yeast Lipomyces starkeyi. Microbial Cell Factories. 16: 126. PMID 28738851 DOI: 10.1186/S12934-017-0742-5 |
0.304 |
|
| 2016 |
Yang S, Fei Q, Zhang Y, Contreras LM, Utturkar SM, Brown SD, Himmel ME, Zhang M. Zymomonas mobilis as a model system for production of biofuels and biochemicals. Microbial Biotechnology. PMID 27629544 DOI: 10.1111/1751-7915.12408 |
0.321 |
|
| 2016 |
Yang S, Mohagheghi A, Franden MA, Chou YC, Chen X, Dowe N, Himmel ME, Zhang M. Metabolic engineering of Zymomonas mobilis for 2,3-butanediol production from lignocellulosic biomass sugars. Biotechnology For Biofuels. 9: 189. PMID 27594916 DOI: 10.1186/S13068-016-0606-Y |
0.327 |
|
| 2016 |
Shu M, Shen W, Yang S, Wang X, Wang F, Wang Y, Ma L. High-level expression and characterization of a novel serine protease in Pichia pastoris by multi-copy integration. Enzyme and Microbial Technology. 92: 56-66. PMID 27542745 DOI: 10.1016/J.Enzmictec.2016.06.007 |
0.36 |
|
| 2016 |
Xu Q, Resch MG, Podkaminer K, Yang S, Baker JO, Donohoe BS, Wilson C, Klingeman DM, Olson DG, Decker SR, Giannone RJ, Hettich RL, Brown SD, Lynd LR, Bayer EA, et al. Dramatic performance of Clostridium thermocellum explained by its wide range of cellulase modalities. Science Advances. 2: e1501254. PMID 26989779 DOI: 10.1126/Sciadv.1501254 |
0.344 |
|
| 2016 |
Yang S, Wang W, Wei H, Van Wychen S, Pienkos P, Zhang M, Himmel M. Comparison of Nitrogen Depletion and Repletion on Lipid Production in Yeast and Fungal Species Energies. 9: 685. DOI: 10.3390/En9090685 |
0.336 |
|
| 2015 |
Mohagheghi A, Linger JG, Yang S, Smith H, Dowe N, Zhang M, Pienkos PT. Improving a recombinant Zymomonas mobilis strain 8b through continuous adaptation on dilute acid pretreated corn stover hydrolysate. Biotechnology For Biofuels. 8: 55. PMID 25834640 DOI: 10.1186/S13068-015-0233-Z |
0.384 |
|
| 2014 |
Yang S, Franden MA, Brown SD, Chou YC, Pienkos PT, Zhang M. Insights into acetate toxicity in Zymomonas mobilis 8b using different substrates. Biotechnology For Biofuels. 7: 140. PMID 25298783 DOI: 10.1186/S13068-014-0140-8 |
0.324 |
|
| 2014 |
Wang W, Yang S, Hunsinger GB, Pienkos PT, Johnson DK. Connecting lignin-degradation pathway with pre-treatment inhibitor sensitivity of Cupriavidus necator. Frontiers in Microbiology. 5: 247. PMID 24904560 DOI: 10.3389/Fmicb.2014.00247 |
0.338 |
|
| 2014 |
Yang S, Pan C, Hurst GB, Dice L, Davison BH, Brown SD. Elucidation of Zymomonas mobilis physiology and stress responses by quantitative proteomics and transcriptomics. Frontiers in Microbiology. 5: 246. PMID 24904559 DOI: 10.3389/Fmicb.2014.00246 |
0.418 |
|
| 2014 |
Zeng Y, Zhao S, Yang S, Ding SY. Lignin plays a negative role in the biochemical process for producing lignocellulosic biofuels. Current Opinion in Biotechnology. 27: 38-45. PMID 24863895 DOI: 10.1016/J.Copbio.2013.09.008 |
0.324 |
|
| 2014 |
Wei H, Fu Y, Magnusson L, Baker JO, Maness PC, Xu Q, Yang S, Bowersox A, Bogorad I, Wang W, Tucker MP, Himmel ME, Ding SY. Comparison of transcriptional profiles of Clostridium thermocellum grown on cellobiose and pretreated yellow poplar using RNA-Seq. Frontiers in Microbiology. 5: 142. PMID 24782837 DOI: 10.3389/Fmicb.2014.00142 |
0.402 |
|
| 2014 |
Mohagheghi A, Linger J, Smith H, Yang S, Dowe N, Pienkos PT. Improving xylose utilization by recombinant Zymomonas mobilis strain 8b through adaptation using 2-deoxyglucose. Biotechnology For Biofuels. 7: 19. PMID 24485299 DOI: 10.1186/1754-6834-7-19 |
0.315 |
|
| 2013 |
Wilson CM, Yang S, Rodriguez M, Ma Q, Johnson CM, Dice L, Xu Y, Brown SD. Clostridium thermocellum transcriptomic profiles after exposure to furfural or heat stress. Biotechnology For Biofuels. 6: 131. PMID 24028713 DOI: 10.1186/1754-6834-6-131 |
0.342 |
|
| 2013 |
Yang S, Guarnieri MT, Smolinski S, Ghirardi M, Pienkos PT. De novo transcriptomic analysis of hydrogen production in the green alga Chlamydomonas moewusii through RNA-Seq. Biotechnology For Biofuels. 6: 118. PMID 23971877 DOI: 10.1186/1754-6834-6-118 |
0.304 |
|
| 2013 |
Guarnieri MT, Nag A, Yang S, Pienkos PT. Proteomic analysis of Chlorella vulgaris: potential targets for enhanced lipid accumulation. Journal of Proteomics. 93: 245-53. PMID 23748020 DOI: 10.1016/J.Jprot.2013.05.025 |
0.384 |
|
| 2012 |
Yang S, Giannone RJ, Dice L, Yang ZK, Engle NL, Tschaplinski TJ, Hettich RL, Brown SD. Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress. Bmc Genomics. 13: 336. PMID 22823947 DOI: 10.1186/1471-2164-13-336 |
0.33 |
|
| 2012 |
Yang S, Klingeman DM, Brown SD. Ethanol-tolerant gene identification in Clostridium thermocellum using pyro-resequencing for metabolic engineering. Methods in Molecular Biology (Clifton, N.J.). 834: 111-36. PMID 22144357 DOI: 10.1007/978-1-61779-483-4_9 |
0.349 |
|
| 2011 |
Brown SD, Guss AM, Karpinets TV, Parks JM, Smolin N, Yang S, Land ML, Klingeman DM, Bhandiwad A, Rodriguez M, Raman B, Shao X, Mielenz JR, Smith JC, Keller M, et al. Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum. Proceedings of the National Academy of Sciences of the United States of America. 108: 13752-7. PMID 21825121 DOI: 10.1073/Pnas.1102444108 |
0.359 |
|
| 2011 |
Glasner JD, Yang CH, Reverchon S, Hugouvieux-Cotte-Pattat N, Condemine G, Bohin JP, Van Gijsegem F, Yang S, Franza T, Expert D, Plunkett G, San Francisco MJ, Charkowski AO, Py B, Bell K, et al. Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937. Journal of Bacteriology. 193: 2076-7. PMID 21217001 DOI: 10.1128/Jb.01513-10 |
0.324 |
|
| 2010 |
Yang S, Peng Q, Zhang Q, Zou L, Li Y, Robert C, Pritchard L, Liu H, Hovey R, Wang Q, Birch P, Toth IK, Yang CH. Genome-wide identification of HrpL-regulated genes in the necrotrophic phytopathogen Dickeya dadantii 3937. Plos One. 5: e13472. PMID 20976052 DOI: 10.1371/Journal.Pone.0013472 |
0.372 |
|
| 2010 |
Yang S, Land ML, Klingeman DM, Pelletier DA, Lu TY, Martin SL, Guo HB, Smith JC, Brown SD. Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 107: 10395-400. PMID 20484677 DOI: 10.1073/Pnas.0914506107 |
0.385 |
|
| 2010 |
Yang S, Pelletier DA, Lu TY, Brown SD. The Zymomonas mobilis regulator hfq contributes to tolerance against multiple lignocellulosic pretreatment inhibitors. Bmc Microbiology. 10: 135. PMID 20459639 DOI: 10.1186/1471-2180-10-135 |
0.374 |
|
| 2010 |
Bochner B, Gomez V, Ziman M, Yang S, Brown SD. Phenotype microarray profiling of Zymomonas mobilis ZM4. Applied Biochemistry and Biotechnology. 161: 116-23. PMID 20012508 DOI: 10.1007/S12010-009-8842-2 |
0.333 |
|
| 2009 |
Yang S, Tschaplinski TJ, Engle NL, Carroll SL, Martin SL, Davison BH, Palumbo AV, Rodriguez M, Brown SD. Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations. Bmc Genomics. 10: 34. PMID 19154596 DOI: 10.1186/1471-2164-10-34 |
0.365 |
|
| 2008 |
Yang S, Peng Q, San Francisco M, Wang Y, Zeng Q, Yang CH. Type III secretion system genes of Dickeya dadantii 3937 are induced by plant phenolic acids. Plos One. 3: e2973. PMID 18698421 DOI: 10.1371/Journal.Pone.0002973 |
0.379 |
|
| 2008 |
Yang S, Peng Q, Zhang Q, Yi X, Choi CJ, Reedy RM, Charkowski AO, Yang CH. Dynamic regulation of GacA in type III secretion, pectinase gene expression, pellicle formation, and pathogenicity of Dickeya dadantii (Erwinia chrysanthemi 3937). Molecular Plant-Microbe Interactions : Mpmi. 21: 133-42. PMID 18052890 DOI: 10.1094/Mpmi-21-1-0133 |
0.387 |
|
| 2008 |
Yang S, Peng Q, Francisco MS, Wang Y, Zeng Q, Yang C. Correction: Type III Secretion System Genes of Dickeya dadantii 3937 Are Induced by Plant Phenolic Acids. Plos One. 3. DOI: 10.1371/Annotation/91170966-226F-4678-999E-22F2C4A6Bb8D |
0.323 |
|
| 2007 |
Yang S, Zhang Q, Guo J, Charkowski AO, Glick BR, Ibekwe AM, Cooksey DA, Yang CH. Global effect of indole-3-acetic acid biosynthesis on multiple virulence factors of Erwinia chrysanthemi 3937. Applied and Environmental Microbiology. 73: 1079-88. PMID 17189441 DOI: 10.1128/Aem.01770-06 |
0.661 |
|
| 2006 |
Peng Q, Yang S, Charkowski AO, Yap MN, Steeber DA, Keen NT, Yang CH. Population behavior analysis of dspE and pelD regulation in Erwinia chrysanthemi 3937. Molecular Plant-Microbe Interactions : Mpmi. 19: 451-7. PMID 16610748 DOI: 10.1094/Mpmi-19-0451 |
0.305 |
|
| 2006 |
Okinaka Y, Perna NT, Yang S, Keen NT, Yang C. Identification of potential virulence genes in Erwinia chrysanthemi 3937: transposon insertion into plant-upregulated genes Journal of General Plant Pathology. 72: 360-368. DOI: 10.1007/S10327-006-0310-Z |
0.357 |
|
| 2004 |
Yang S, Perna NT, Cooksey DA, Okinaka Y, Lindow SE, Ibekwe AM, Keen NT, Yang CH. Genome-wide identification of plant-upregulated genes of Erwinia chrysanthemi 3937 using a GFP-based IVET leaf array. Molecular Plant-Microbe Interactions : Mpmi. 17: 999-1008. PMID 15384490 DOI: 10.1094/Mpmi.2004.17.9.999 |
0.639 |
|
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